Wall clock time and date at job start Tue Mar 31 2020 13:22:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42898 * 109.47137 * 2 1
4 4 C 1.35993 * 116.99885 * 179.97438 * 3 2 1
5 5 C 1.38562 * 120.07643 * 359.72699 * 4 3 2
6 6 C 1.38241 * 120.00009 * 180.29703 * 5 4 3
7 7 C 1.50702 * 119.92640 * 179.97438 * 6 5 4
8 8 N 1.46902 * 109.47374 * 269.95744 * 7 6 5
9 9 C 1.46899 * 111.00273 * 190.00051 * 8 7 6
10 10 C 1.50693 * 109.47163 * 75.54029 * 9 8 7
11 11 H 1.07998 * 120.00425 * 357.26801 * 10 9 8
12 12 C 1.37882 * 120.00008 * 177.27330 * 10 9 8
13 13 N 1.31515 * 119.99940 * 179.97438 * 12 10 9
14 14 Si 1.86795 * 119.99984 * 0.02562 * 12 10 9
15 15 H 1.48498 * 109.47048 * 89.99734 * 14 12 10
16 16 H 1.48499 * 109.47121 * 210.00126 * 14 12 10
17 17 H 1.48505 * 109.46851 * 330.00085 * 14 12 10
18 18 C 1.46894 * 110.99926 * 66.04241 * 8 7 6
19 19 C 1.53004 * 109.46945 * 195.26186 * 18 8 7
20 20 C 1.53004 * 117.49727 * 244.21088 * 19 18 8
21 21 C 1.53007 * 117.49790 * 175.55334 * 19 18 8
22 22 C 1.38246 * 120.14838 * 359.94995 * 6 5 4
23 23 C 1.38240 * 120.14794 * 0.04880 * 22 6 5
24 24 C 1.38563 * 119.99568 * 359.97319 * 23 22 6
25 25 O 1.35998 * 120.07197 * 179.97438 * 24 23 22
26 26 C 1.42905 * 116.99900 * 0.02696 * 25 24 23
27 27 H 1.09008 * 109.46981 * 180.02562 * 1 2 3
28 28 H 1.09003 * 109.47272 * 299.99734 * 1 2 3
29 29 H 1.08995 * 109.47742 * 60.00205 * 1 2 3
30 30 H 1.08996 * 109.47169 * 239.99572 * 2 1 3
31 31 H 1.09007 * 109.47308 * 119.99880 * 2 1 3
32 32 H 1.08004 * 119.99691 * 0.27143 * 5 4 3
33 33 H 1.09005 * 109.47288 * 29.95505 * 7 6 5
34 34 H 1.08997 * 109.47715 * 149.95448 * 7 6 5
35 35 H 1.08996 * 109.47072 * 195.54042 * 9 8 7
36 36 H 1.09007 * 109.46977 * 315.54137 * 9 8 7
37 37 H 0.96998 * 120.00053 * 179.97438 * 13 12 10
38 38 H 1.09004 * 109.47695 * 315.25935 * 18 8 7
39 39 H 1.08999 * 109.47559 * 75.26476 * 18 8 7
40 40 H 1.08990 * 115.55080 * 29.88501 * 19 18 8
41 41 H 1.09000 * 117.49965 * 0.02562 * 20 19 18
42 42 H 1.08998 * 117.49792 * 145.02625 * 20 19 18
43 43 H 1.08997 * 117.49963 * 214.98136 * 21 19 18
44 44 H 1.08999 * 117.49723 * 359.97438 * 21 19 18
45 45 H 1.08003 * 119.92917 * 180.02562 * 22 6 5
46 46 H 1.08002 * 120.00191 * 179.97438 * 23 22 6
47 47 H 1.09001 * 109.46828 * 180.02562 * 26 25 24
48 48 H 1.09006 * 109.47014 * 299.99551 * 26 25 24
49 49 H 1.08996 * 109.47496 * 59.99694 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3545 1.5254 0.0005
5 6 4.2000 0.4277 0.0068
6 6 5.5702 0.6106 0.0135
7 6 6.4883 -0.5845 0.0209
8 7 6.7802 -0.9693 1.4082
9 6 7.8514 -1.9730 1.4620
10 6 9.1784 -1.3056 1.2078
11 1 9.2175 -0.2504 0.9810
12 6 10.3426 -2.0421 1.2646
13 7 11.5006 -1.4597 1.0423
14 14 10.2750 -3.8673 1.6559
15 1 10.1411 -4.6394 0.3945
16 1 11.5225 -4.2707 2.3533
17 1 9.1073 -4.1429 2.5312
18 6 5.5703 -1.4538 2.0859
19 6 5.8089 -1.4825 3.5969
20 6 5.7816 -2.8460 4.2905
21 6 4.6270 -1.8614 4.4917
22 6 6.1002 1.8874 0.0130
23 6 5.2624 2.9870 0.0068
24 6 3.8880 2.8106 0.0005
25 8 3.0623 3.8912 -0.0051
26 6 3.6802 5.1798 -0.0047
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 3.7884 -0.5709 0.0068
33 1 6.0062 -1.4162 -0.4930
34 1 7.4177 -0.3319 -0.4893
35 1 7.8624 -2.4403 2.4466
36 1 7.6754 -2.7333 0.7009
37 1 12.3197 -1.9777 1.0826
38 1 4.7370 -0.7875 1.8623
39 1 5.3357 -2.4590 1.7359
40 1 6.5093 -0.7387 3.9764
41 1 5.5941 -3.7225 3.6704
42 1 6.4639 -2.9990 5.1268
43 1 4.5501 -1.3670 5.4600
44 1 3.6794 -2.0897 4.0039
45 1 7.1713 2.0263 0.0179
46 1 5.6790 3.9834 0.0068
47 1 2.9106 5.9517 -0.0091
48 1 4.2966 5.2869 0.8879
49 1 4.3046 5.2837 -0.8921
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000093091382.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:22:34
Heat of formation + Delta-G solvation = -17.936159 kcal
Electronic energy + Delta-G solvation = -27493.670381 eV
Core-core repulsion = 23808.661412 eV
Total energy + Delta-G solvation = -3685.008969 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.49984 -38.48696 -38.20742 -36.90403 -35.23443 -32.52092 -31.98920 -30.61181
-29.64049 -28.11832 -27.73807 -26.03489 -23.98687 -23.61141 -22.12264 -21.62549
-21.28962 -20.55857 -19.64701 -18.30551 -17.11308 -16.78999 -16.42821 -16.25992
-15.48094 -15.47703 -14.88319 -14.73092 -14.49718 -14.21561 -13.99190 -13.70760
-13.53431 -13.22298 -13.07291 -12.68501 -12.50315 -12.35403 -12.12305 -12.06199
-11.88137 -11.53543 -11.46457 -11.28030 -11.00558 -10.97106 -10.90726 -10.76305
-10.67824 -10.65590 -10.28250 -10.01242 -9.78402 -9.45772 -9.29068 -8.56153
-8.50466 -7.60652 -7.38357 -6.04050 -4.00407 1.44581 1.64793 3.20940
3.27955 3.32713 3.36134 3.38342 3.86480 4.11921 4.42894 4.73754
4.79602 4.80540 4.92538 5.03117 5.07453 5.11166 5.12901 5.18530
5.22971 5.24997 5.28541 5.40166 5.46005 5.47461 5.50875 5.63723
5.64047 5.75248 5.81889 5.83316 5.85274 5.92455 6.07298 6.11064
6.20971 6.30570 6.35296 6.43713 6.49920 6.68649 6.85165 6.87112
6.90149 7.01153 7.13041 7.65110 7.68391 7.90747 8.02530 8.67459
9.05667 9.58391 11.09211
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.012362 B = 0.003830 C = 0.003269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2264.424582 B = 7309.706029 C = 8564.385448
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.053 3.947
3 O -0.309 6.309
4 C 0.096 3.904
5 C -0.169 4.169
6 C -0.058 4.058
7 C 0.099 3.901
8 N -0.516 5.516
9 C 0.161 3.839
10 C -0.504 4.504
11 H 0.081 0.919
12 C 0.069 3.931
13 N -0.901 5.901
14 Si 0.870 3.130
15 H -0.279 1.279
16 H -0.286 1.286
17 H -0.265 1.265
18 C 0.078 3.922
19 C -0.129 4.129
20 C -0.184 4.184
21 C -0.186 4.186
22 C -0.090 4.090
23 C -0.172 4.172
24 C 0.087 3.913
25 O -0.311 6.311
26 C 0.028 3.972
27 H 0.075 0.925
28 H 0.065 0.935
29 H 0.064 0.936
30 H 0.059 0.941
31 H 0.060 0.940
32 H 0.128 0.872
33 H 0.028 0.972
34 H 0.098 0.902
35 H 0.036 0.964
36 H -0.017 1.017
37 H 0.263 0.737
38 H 0.072 0.928
39 H 0.022 0.978
40 H 0.114 0.886
41 H 0.087 0.913
42 H 0.090 0.910
43 H 0.090 0.910
44 H 0.086 0.914
45 H 0.133 0.867
46 H 0.132 0.868
47 H 0.095 0.905
48 H 0.054 0.946
49 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.436 5.505 -1.018 20.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.022 4.022
3 O -0.223 6.223
4 C 0.051 3.949
5 C -0.189 4.189
6 C -0.059 4.059
7 C -0.028 4.028
8 N -0.239 5.239
9 C 0.035 3.965
10 C -0.543 4.543
11 H 0.099 0.901
12 C -0.133 4.133
13 N -0.541 5.541
14 Si 0.698 3.302
15 H -0.204 1.204
16 H -0.212 1.212
17 H -0.190 1.190
18 C -0.051 4.051
19 C -0.148 4.148
20 C -0.221 4.221
21 C -0.223 4.223
22 C -0.109 4.109
23 C -0.190 4.190
24 C 0.042 3.958
25 O -0.225 6.225
26 C -0.067 4.067
27 H 0.094 0.906
28 H 0.084 0.916
29 H 0.084 0.916
30 H 0.077 0.923
31 H 0.078 0.922
32 H 0.146 0.854
33 H 0.046 0.954
34 H 0.116 0.884
35 H 0.054 0.946
36 H 0.000 1.000
37 H 0.073 0.927
38 H 0.090 0.910
39 H 0.040 0.960
40 H 0.132 0.868
41 H 0.106 0.894
42 H 0.109 0.891
43 H 0.108 0.892
44 H 0.105 0.895
45 H 0.151 0.849
46 H 0.150 0.850
47 H 0.114 0.886
48 H 0.072 0.928
49 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -19.427 6.015 -0.782 20.351
hybrid contribution 0.257 -1.879 -0.126 1.900
sum -19.170 4.136 -0.908 19.632
Atomic orbital electron populations
1.21745 0.92961 1.02565 1.03398 1.22734 0.95687 0.82516 1.01269
1.86124 1.18418 1.28395 1.89379 1.18080 0.82714 0.91060 1.03029
1.20957 0.93627 0.97032 1.07247 1.19714 0.92541 0.95574 0.98042
1.20986 0.98304 0.92572 0.90954 1.61932 1.06177 1.42557 1.13251
1.20251 0.90488 0.89620 0.96140 1.21040 0.88215 0.97937 1.47069
0.90133 1.24875 0.95416 0.97891 0.95075 1.69889 0.97685 1.36140
1.50345 0.86929 0.77791 0.86526 0.78955 1.20446 1.21235 1.19018
1.21758 0.93999 0.97372 0.91937 1.22284 1.00323 0.98447 0.93732
1.23000 1.01555 0.93962 1.03584 1.22923 0.93456 1.04655 1.01313
1.20860 1.00285 0.90914 0.98825 1.21057 0.90988 1.00238 1.06740
1.18180 0.88988 0.85038 1.03602 1.86127 1.33982 1.12935 1.89497
1.23008 0.99569 0.82917 1.01254 0.90592 0.91593 0.91647 0.92295
0.92209 0.85385 0.95367 0.88381 0.94601 0.99972 0.92747 0.90964
0.96017 0.86795 0.89419 0.89136 0.89200 0.89515 0.84893 0.85031
0.88646 0.92777 0.92862
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 10.28 37.15 0.38 -0.85 16
2 C 0.05 0.57 5.46 37.15 0.20 0.77 16
3 O -0.31 -4.42 9.92 -34.22 -0.34 -4.75 16
4 C 0.10 1.46 6.70 -39.12 -0.26 1.20 16
5 C -0.17 -2.50 6.83 -39.46 -0.27 -2.77 16
6 C -0.06 -0.94 4.93 -104.62 -0.52 -1.46 16
7 C 0.10 1.82 4.94 -4.97 -0.02 1.80 16
8 N -0.52 -10.43 4.38 -237.52 -1.04 -11.47 16
9 C 0.16 3.80 3.67 -4.98 -0.02 3.78 16
10 C -0.50 -13.95 9.14 -34.44 -0.31 -14.27 16
11 H 0.08 2.42 7.95 -52.49 -0.42 2.00 16
12 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
13 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16
14 Si 0.87 21.28 27.52 -169.99 -4.68 16.60 16
15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
17 H -0.27 -6.24 6.46 56.52 0.37 -5.88 16
18 C 0.08 1.34 5.07 -3.83 -0.02 1.32 16
19 C -0.13 -2.15 4.95 -90.61 -0.45 -2.60 16
20 C -0.18 -2.78 9.96 -26.69 -0.27 -3.04 16
21 C -0.19 -2.50 10.26 -26.69 -0.27 -2.77 16
22 C -0.09 -1.42 9.69 -39.58 -0.38 -1.80 16
23 C -0.17 -2.41 9.04 -39.46 -0.36 -2.77 16
24 C 0.09 1.30 6.70 -39.12 -0.26 1.04 16
25 O -0.31 -4.36 10.28 -34.24 -0.35 -4.71 16
26 C 0.03 0.26 9.81 101.05 0.99 1.25 16
27 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16
28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
30 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16
31 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16
32 H 0.13 1.69 5.99 -52.48 -0.31 1.38 16
33 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16
34 H 0.10 1.98 7.29 -51.93 -0.38 1.60 16
35 H 0.04 0.87 5.78 -51.93 -0.30 0.57 16
36 H -0.02 -0.41 7.57 -51.93 -0.39 -0.81 16
37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
38 H 0.07 1.16 5.17 -51.93 -0.27 0.89 16
39 H 0.02 0.37 7.80 -51.93 -0.40 -0.04 16
40 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16
41 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16
42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
44 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16
45 H 0.13 2.12 8.06 -52.48 -0.42 1.69 16
46 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16
47 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16
48 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16
49 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16
LS Contribution 391.73 15.07 5.90 5.90
Total: -1.00 -31.63 391.73 -9.88 -41.51
By element:
Atomic # 1 Polarization: 10.94 SS G_CDS: -8.21 Total: 2.73 kcal
Atomic # 6 Polarization: -17.38 SS G_CDS: -1.94 Total: -19.31 kcal
Atomic # 7 Polarization: -37.69 SS G_CDS: -0.27 Total: -37.96 kcal
Atomic # 8 Polarization: -8.77 SS G_CDS: -0.69 Total: -9.47 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -4.68 Total: 16.60 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -31.63 -9.88 -41.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093091382.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.570 kcal
(2) G-P(sol) polarization free energy of solvation -31.628 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.936 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds