Wall clock time and date at job start Tue Mar 31 2020 13:22:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 O 1.42898 * 109.47137 * 2 1
4 4 C 1.35993 * 116.99885 * 179.97438 * 3 2 1
5 5 C 1.38562 * 120.07643 * 359.72699 * 4 3 2
6 6 C 1.38241 * 120.00009 * 180.29703 * 5 4 3
7 7 C 1.50702 * 119.92640 * 179.97438 * 6 5 4
8 8 N 1.46902 * 109.47374 * 269.95744 * 7 6 5
9 9 C 1.46899 * 111.00273 * 190.00051 * 8 7 6
10 10 C 1.50693 * 109.47163 * 75.54029 * 9 8 7
11 11 H 1.07998 * 120.00425 * 357.26801 * 10 9 8
12 12 C 1.37882 * 120.00008 * 177.27330 * 10 9 8
13 13 N 1.31515 * 119.99940 * 179.97438 * 12 10 9
14 14 Si 1.86795 * 119.99984 * 0.02562 * 12 10 9
15 15 H 1.48498 * 109.47048 * 89.99734 * 14 12 10
16 16 H 1.48499 * 109.47121 * 210.00126 * 14 12 10
17 17 H 1.48505 * 109.46851 * 330.00085 * 14 12 10
18 18 C 1.46894 * 110.99926 * 66.04241 * 8 7 6
19 19 C 1.53004 * 109.46945 * 195.26186 * 18 8 7
20 20 C 1.53004 * 117.49727 * 244.21088 * 19 18 8
21 21 C 1.53007 * 117.49790 * 175.55334 * 19 18 8
22 22 C 1.38246 * 120.14838 * 359.94995 * 6 5 4
23 23 C 1.38240 * 120.14794 * 0.04880 * 22 6 5
24 24 C 1.38563 * 119.99568 * 359.97319 * 23 22 6
25 25 O 1.35998 * 120.07197 * 179.97438 * 24 23 22
26 26 C 1.42905 * 116.99900 * 0.02696 * 25 24 23
27 27 H 1.09008 * 109.46981 * 180.02562 * 1 2 3
28 28 H 1.09003 * 109.47272 * 299.99734 * 1 2 3
29 29 H 1.08995 * 109.47742 * 60.00205 * 1 2 3
30 30 H 1.08996 * 109.47169 * 239.99572 * 2 1 3
31 31 H 1.09007 * 109.47308 * 119.99880 * 2 1 3
32 32 H 1.08004 * 119.99691 * 0.27143 * 5 4 3
33 33 H 1.09005 * 109.47288 * 29.95505 * 7 6 5
34 34 H 1.08997 * 109.47715 * 149.95448 * 7 6 5
35 35 H 1.08996 * 109.47072 * 195.54042 * 9 8 7
36 36 H 1.09007 * 109.46977 * 315.54137 * 9 8 7
37 37 H 0.96998 * 120.00053 * 179.97438 * 13 12 10
38 38 H 1.09004 * 109.47695 * 315.25935 * 18 8 7
39 39 H 1.08999 * 109.47559 * 75.26476 * 18 8 7
40 40 H 1.08990 * 115.55080 * 29.88501 * 19 18 8
41 41 H 1.09000 * 117.49965 * 0.02562 * 20 19 18
42 42 H 1.08998 * 117.49792 * 145.02625 * 20 19 18
43 43 H 1.08997 * 117.49963 * 214.98136 * 21 19 18
44 44 H 1.08999 * 117.49723 * 359.97438 * 21 19 18
45 45 H 1.08003 * 119.92917 * 180.02562 * 22 6 5
46 46 H 1.08002 * 120.00191 * 179.97438 * 23 22 6
47 47 H 1.09001 * 109.46828 * 180.02562 * 26 25 24
48 48 H 1.09006 * 109.47014 * 299.99551 * 26 25 24
49 49 H 1.08996 * 109.47496 * 59.99694 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.3545 1.5254 0.0005
5 6 4.2000 0.4277 0.0068
6 6 5.5702 0.6106 0.0135
7 6 6.4883 -0.5845 0.0209
8 7 6.7802 -0.9693 1.4082
9 6 7.8514 -1.9730 1.4620
10 6 9.1784 -1.3056 1.2078
11 1 9.2175 -0.2504 0.9810
12 6 10.3426 -2.0421 1.2646
13 7 11.5006 -1.4597 1.0423
14 14 10.2750 -3.8673 1.6559
15 1 10.1411 -4.6394 0.3945
16 1 11.5225 -4.2707 2.3533
17 1 9.1073 -4.1429 2.5312
18 6 5.5703 -1.4538 2.0859
19 6 5.8089 -1.4825 3.5969
20 6 5.7816 -2.8460 4.2905
21 6 4.6270 -1.8614 4.4917
22 6 6.1002 1.8874 0.0130
23 6 5.2624 2.9870 0.0068
24 6 3.8880 2.8106 0.0005
25 8 3.0623 3.8912 -0.0051
26 6 3.6802 5.1798 -0.0047
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 3.7884 -0.5709 0.0068
33 1 6.0062 -1.4162 -0.4930
34 1 7.4177 -0.3319 -0.4893
35 1 7.8624 -2.4403 2.4466
36 1 7.6754 -2.7333 0.7009
37 1 12.3197 -1.9777 1.0826
38 1 4.7370 -0.7875 1.8623
39 1 5.3357 -2.4590 1.7359
40 1 6.5093 -0.7387 3.9764
41 1 5.5941 -3.7225 3.6704
42 1 6.4639 -2.9990 5.1268
43 1 4.5501 -1.3670 5.4600
44 1 3.6794 -2.0897 4.0039
45 1 7.1713 2.0263 0.0179
46 1 5.6790 3.9834 0.0068
47 1 2.9106 5.9517 -0.0091
48 1 4.2966 5.2869 0.8879
49 1 4.3046 5.2837 -0.8921
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000093091382.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:22:33
Heat of formation + Delta-G solvation = -36.197659 kcal
Electronic energy + Delta-G solvation = -27494.462259 eV
Core-core repulsion = 23808.661412 eV
Total energy + Delta-G solvation = -3685.800847 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.60582 -39.60667 -39.43627 -38.05140 -36.64947 -34.58911 -32.86917 -31.92493
-30.70873 -29.92732 -28.73885 -27.27199 -25.33689 -24.79564 -23.24524 -22.92978
-22.56056 -21.85243 -21.05051 -19.37490 -18.95161 -18.11992 -17.54770 -17.22517
-16.87782 -16.52450 -16.35673 -16.08971 -15.67731 -15.52358 -15.24196 -15.13344
-14.87031 -14.43520 -14.10959 -14.10234 -13.93896 -13.47748 -13.38263 -13.13268
-12.91230 -12.86696 -12.79195 -12.51266 -12.37802 -12.29724 -12.16366 -11.99619
-11.92226 -11.80168 -11.71426 -11.61433 -11.46348 -11.09364 -10.77210 -10.68894
-9.66206 -9.00441 -8.72539 -8.24680 -6.26293 0.28741 0.44547 1.34514
1.36778 1.47203 2.25828 2.36391 2.37979 2.64694 2.94180 3.08882
3.34984 3.74031 3.83426 3.96569 4.05845 4.06779 4.07993 4.12074
4.18891 4.23290 4.36337 4.42004 4.43483 4.47428 4.51390 4.55716
4.60984 4.69388 4.74928 4.77855 4.78157 4.87296 4.92547 4.96841
4.98121 5.04835 5.09558 5.14177 5.26578 5.27190 5.30710 5.39941
5.60492 5.68920 5.72436 6.04298 6.14349 6.40544 6.63955 6.69381
6.79782 7.36722 8.92039
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.012362 B = 0.003830 C = 0.003269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2264.424582 B = 7309.706029 C = 8564.385448
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.042 3.958
3 O -0.322 6.322
4 C 0.090 3.910
5 C -0.163 4.163
6 C -0.070 4.070
7 C 0.106 3.894
8 N -0.532 5.532
9 C 0.175 3.825
10 C -0.507 4.507
11 H 0.038 0.962
12 C 0.009 3.991
13 N -0.949 5.949
14 Si 0.939 3.061
15 H -0.269 1.269
16 H -0.284 1.284
17 H -0.247 1.247
18 C 0.084 3.916
19 C -0.160 4.160
20 C -0.188 4.188
21 C -0.154 4.154
22 C -0.106 4.106
23 C -0.166 4.166
24 C 0.082 3.918
25 O -0.327 6.327
26 C 0.018 3.982
27 H 0.100 0.900
28 H 0.063 0.937
29 H 0.063 0.937
30 H 0.066 0.934
31 H 0.066 0.934
32 H 0.145 0.855
33 H 0.040 0.960
34 H 0.066 0.934
35 H 0.035 0.965
36 H -0.016 1.016
37 H 0.265 0.735
38 H 0.085 0.915
39 H 0.030 0.970
40 H 0.087 0.913
41 H 0.092 0.908
42 H 0.090 0.910
43 H 0.104 0.896
44 H 0.107 0.893
45 H 0.119 0.881
46 H 0.155 0.845
47 H 0.120 0.880
48 H 0.061 0.939
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.373 4.362 -0.355 22.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.032 4.032
3 O -0.237 6.237
4 C 0.045 3.955
5 C -0.182 4.182
6 C -0.071 4.071
7 C -0.022 4.022
8 N -0.255 5.255
9 C 0.048 3.952
10 C -0.546 4.546
11 H 0.056 0.944
12 C -0.187 4.187
13 N -0.590 5.590
14 Si 0.763 3.237
15 H -0.194 1.194
16 H -0.210 1.210
17 H -0.171 1.171
18 C -0.044 4.044
19 C -0.179 4.179
20 C -0.225 4.225
21 C -0.192 4.192
22 C -0.125 4.125
23 C -0.184 4.184
24 C 0.036 3.964
25 O -0.242 6.242
26 C -0.077 4.077
27 H 0.118 0.882
28 H 0.082 0.918
29 H 0.082 0.918
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.163 0.837
33 H 0.058 0.942
34 H 0.085 0.915
35 H 0.053 0.947
36 H 0.002 0.998
37 H 0.074 0.926
38 H 0.103 0.897
39 H 0.048 0.952
40 H 0.105 0.895
41 H 0.111 0.889
42 H 0.109 0.891
43 H 0.122 0.878
44 H 0.125 0.875
45 H 0.137 0.863
46 H 0.173 0.827
47 H 0.138 0.862
48 H 0.079 0.921
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -22.398 4.885 -0.119 22.925
hybrid contribution 1.103 -1.344 -0.357 1.775
sum -21.296 3.541 -0.476 21.593
Atomic orbital electron populations
1.21773 0.91158 1.04093 1.03200 1.23060 0.97164 0.81063 1.01939
1.86127 1.17689 1.30687 1.89177 1.18242 0.83345 0.91261 1.02666
1.20972 0.92638 0.97924 1.06669 1.19528 0.92977 0.94734 0.99890
1.20842 0.97499 0.93944 0.89895 1.61804 1.07195 1.41881 1.14658
1.19944 0.89648 0.89866 0.95741 1.21270 0.90649 0.96332 1.46318
0.94354 1.25769 0.94837 1.03157 0.94986 1.70048 0.98589 1.38307
1.52096 0.85824 0.78391 0.80107 0.79337 1.19398 1.20964 1.17096
1.21770 0.92700 0.97889 0.92030 1.22197 1.02680 0.99233 0.93766
1.23075 1.02656 0.93410 1.03371 1.23013 0.93032 1.02200 1.00931
1.20857 0.99956 0.91691 1.00011 1.21202 0.90709 1.00735 1.05787
1.18389 0.89264 0.85716 1.03011 1.86112 1.34726 1.14055 1.89264
1.23333 1.00795 0.81428 1.02100 0.88176 0.91825 0.91812 0.91534
0.91550 0.83718 0.94159 0.91527 0.94672 0.99799 0.92619 0.89732
0.95155 0.89459 0.88924 0.89113 0.87811 0.87505 0.86307 0.82707
0.86200 0.92077 0.91805
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16
2 C 0.04 0.80 5.46 71.98 0.39 1.20 16
3 O -0.32 -8.68 9.92 -79.60 -0.79 -9.47 16
4 C 0.09 2.63 6.70 22.57 0.15 2.78 16
5 C -0.16 -4.65 6.83 22.35 0.15 -4.50 16
6 C -0.07 -2.32 4.93 -19.86 -0.10 -2.42 16
7 C 0.11 3.98 4.94 85.56 0.42 4.40 16
8 N -0.53 -21.80 4.38 -905.37 -3.96 -25.77 16
9 C 0.17 8.31 3.67 85.56 0.31 8.62 16
10 C -0.51 -29.20 9.14 25.60 0.23 -28.97 16
11 H 0.04 2.46 7.95 -2.91 -0.02 2.44 16
12 C 0.01 0.55 5.47 84.66 0.46 1.01 16
13 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16
14 Si 0.94 44.03 27.52 68.60 1.89 45.92 16
15 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
16 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16
17 H -0.25 -10.78 6.46 99.48 0.64 -10.13 16
18 C 0.08 2.78 5.07 86.31 0.44 3.22 16
19 C -0.16 -5.12 4.95 -10.79 -0.05 -5.17 16
20 C -0.19 -5.25 9.96 30.62 0.31 -4.94 16
21 C -0.15 -3.67 10.26 30.62 0.31 -3.35 16
22 C -0.11 -3.46 9.69 22.27 0.22 -3.24 16
23 C -0.17 -4.61 9.04 22.35 0.20 -4.41 16
24 C 0.08 2.37 6.70 22.57 0.15 2.52 16
25 O -0.33 -8.68 10.28 -79.66 -0.82 -9.50 16
26 C 0.02 0.30 9.81 113.37 1.11 1.41 16
27 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16
28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
30 H 0.07 1.15 7.67 -2.39 -0.02 1.14 16
31 H 0.07 1.17 7.65 -2.38 -0.02 1.15 16
32 H 0.15 3.53 5.99 -2.91 -0.02 3.52 16
33 H 0.04 1.39 8.06 -2.38 -0.02 1.37 16
34 H 0.07 2.88 7.29 -2.39 -0.02 2.86 16
35 H 0.04 1.68 5.78 -2.39 -0.01 1.67 16
36 H -0.02 -0.73 7.57 -2.38 -0.02 -0.75 16
37 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16
38 H 0.08 2.57 5.17 -2.38 -0.01 2.56 16
39 H 0.03 0.96 7.80 -2.39 -0.02 0.94 16
40 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16
41 H 0.09 2.49 8.03 -2.39 -0.02 2.47 16
42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16
43 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16
44 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16
45 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16
46 H 0.16 3.41 6.30 -2.91 -0.02 3.39 16
47 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16
48 H 0.06 0.94 7.66 -2.38 -0.02 0.93 16
49 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16
Total: -1.00 -70.50 391.73 2.93 -67.57
By element:
Atomic # 1 Polarization: 22.67 SS G_CDS: 0.86 Total: 23.53 kcal
Atomic # 6 Polarization: -38.58 SS G_CDS: 5.46 Total: -33.12 kcal
Atomic # 7 Polarization: -81.26 SS G_CDS: -3.66 Total: -84.92 kcal
Atomic # 8 Polarization: -17.36 SS G_CDS: -1.61 Total: -18.97 kcal
Atomic # 14 Polarization: 44.03 SS G_CDS: 1.89 Total: 45.92 kcal
Total: -70.50 2.93 -67.57 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093091382.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.369 kcal
(2) G-P(sol) polarization free energy of solvation -70.497 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.198 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds