Wall clock time and date at job start Tue Mar 31 2020 13:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00129 * 2 1 4 4 C 1.50705 * 109.47198 * 293.95793 * 3 2 1 5 5 C 1.38290 * 119.96586 * 269.72268 * 4 3 2 6 6 C 1.38247 * 120.10428 * 179.72562 * 5 4 3 7 7 C 1.38166 * 120.05812 * 0.54623 * 6 5 4 8 8 C 1.38712 * 119.94335 * 359.72919 * 7 6 5 9 9 O 1.35897 * 120.05363 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00159 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47294 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47059 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00518 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99519 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99635 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00141 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47275 * 89.99950 * 16 14 12 18 18 H 1.48507 * 109.46997 * 209.99878 * 16 14 12 19 19 H 1.48501 * 109.47337 * 329.99499 * 16 14 12 20 20 C 1.38116 * 119.97273 * 89.99651 * 4 3 2 21 21 C 1.46900 * 111.00025 * 123.95571 * 2 1 3 22 22 C 1.52996 * 109.46907 * 163.83991 * 21 2 1 23 23 H 1.08994 * 110.46299 * 54.68002 * 22 21 2 24 24 C 1.54515 * 110.50735 * 177.28709 * 22 21 2 25 25 C 1.54476 * 104.06255 * 118.78318 * 24 22 21 26 26 O 1.44424 * 104.80678 * 23.97547 * 25 24 22 27 27 C 1.44788 * 105.29477 * 319.45665 * 26 25 24 28 28 H 1.08997 * 109.47033 * 302.36680 * 1 2 3 29 29 H 1.09006 * 109.47220 * 62.36317 * 1 2 3 30 30 H 1.08997 * 109.47232 * 182.36174 * 1 2 3 31 31 H 1.09007 * 109.46486 * 53.95239 * 3 2 1 32 32 H 1.08992 * 109.47380 * 173.95036 * 3 2 1 33 33 H 1.07992 * 119.94604 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.96890 * 180.25297 * 6 5 4 35 35 H 1.07998 * 120.02839 * 179.70426 * 7 6 5 36 36 H 1.08993 * 109.47176 * 299.99761 * 10 9 8 37 37 H 1.09004 * 109.46790 * 59.99936 * 10 9 8 38 38 H 1.08993 * 109.47355 * 300.00313 * 11 10 9 39 39 H 1.09000 * 109.46724 * 60.00052 * 11 10 9 40 40 H 0.97003 * 119.99820 * 179.97438 * 15 14 12 41 41 H 1.08001 * 120.03176 * 359.97438 * 20 4 3 42 42 H 1.08993 * 109.46951 * 43.83441 * 21 2 1 43 43 H 1.08997 * 109.46930 * 283.84036 * 21 2 1 44 44 H 1.09002 * 110.50519 * 237.42262 * 24 22 21 45 45 H 1.09000 * 110.51280 * 359.97438 * 24 22 21 46 46 H 1.08998 * 110.37525 * 142.81061 * 25 24 22 47 47 H 1.09003 * 110.36758 * 265.14634 * 25 24 22 48 48 H 1.09006 * 110.42273 * 281.77578 * 27 26 25 49 49 H 1.08996 * 110.49077 * 159.32686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4973 1.9694 -2.3783 6 6 2.1686 2.5835 -3.5725 7 6 0.9844 3.2861 -3.6864 8 6 0.1224 3.3704 -2.6029 9 8 -1.0427 4.0613 -2.7123 10 6 -1.3166 4.6759 -3.9729 11 6 -2.6618 5.4017 -3.9049 12 6 -2.9503 6.0504 -5.2342 13 1 -2.2451 5.9542 -6.0465 14 6 -4.1148 6.7667 -5.4134 15 7 -4.3669 7.3323 -6.5737 16 14 -5.3343 6.9336 -4.0083 17 1 -5.0070 8.1420 -3.2097 18 1 -6.7081 7.0606 -4.5577 19 1 -5.2574 5.7310 -3.1406 20 6 0.4519 2.7484 -1.4071 21 6 1.9954 -0.7660 1.1376 22 6 3.4716 -1.0876 0.8963 23 1 4.0328 -0.1748 0.6965 24 6 4.0681 -1.8351 2.1100 25 6 4.5137 -3.1960 1.5307 26 8 4.7154 -2.9493 0.1220 27 6 3.6243 -2.0840 -0.2743 28 1 -0.3633 0.5501 0.8680 29 1 -0.3634 0.4767 -0.9105 30 1 -0.3633 -1.0268 0.0423 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3445 0.1083 33 1 3.4256 1.4248 -2.2897 34 1 2.8403 2.5179 -4.4157 35 1 0.7303 3.7696 -4.6180 36 1 -0.5287 5.3916 -4.2071 37 1 -1.3555 3.9114 -4.7490 38 1 -3.4496 4.6858 -3.6710 39 1 -2.6233 6.1661 -3.1288 40 1 -5.1863 7.8359 -6.6999 41 1 -0.2178 2.8123 -0.5623 42 1 1.4336 -1.6942 1.2417 43 1 1.8961 -0.1770 2.0493 44 1 4.9242 -1.2917 2.5101 45 1 3.3114 -1.9751 2.8819 46 1 5.4444 -3.5203 1.9962 47 1 3.7345 -3.9441 1.6771 48 1 2.7087 -2.6611 -0.4032 49 1 3.8724 -1.5539 -1.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093839872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:12 Heat of formation + Delta-G solvation = -63.666281 kcal Electronic energy + Delta-G solvation = -26175.732644 eV Core-core repulsion = 22488.740668 eV Total energy + Delta-G solvation = -3686.991976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.17011 -39.72043 -38.10579 -36.67620 -33.38635 -33.13536 -31.37590 -31.08938 -29.71973 -29.48261 -27.24967 -26.36648 -25.16479 -23.48723 -22.53973 -22.29070 -21.32236 -20.55367 -20.05382 -17.75105 -16.95264 -16.65572 -16.33073 -15.89280 -15.77592 -15.63850 -15.47113 -15.17215 -15.02155 -14.71793 -14.21353 -14.09476 -13.62384 -13.19961 -13.08066 -12.93300 -12.85192 -12.47546 -12.38494 -12.24887 -11.93063 -11.84964 -11.61834 -11.53109 -11.41674 -11.34731 -11.26088 -10.86338 -10.78544 -10.63362 -10.20275 -10.10341 -10.01061 -9.83702 -9.36661 -8.87089 -8.64479 -8.54982 -7.91057 -6.15500 -4.16454 1.37871 1.63943 3.26498 3.33830 3.38982 3.47428 3.66242 3.73283 4.00081 4.25782 4.35998 4.36968 4.54241 4.64437 4.65421 4.86703 4.90466 5.00127 5.07319 5.10712 5.18522 5.19279 5.24173 5.27320 5.31052 5.36412 5.40597 5.44211 5.47990 5.54246 5.59470 5.65506 5.74958 5.80608 5.82215 5.90117 5.94200 6.11809 6.39573 6.45914 6.48188 6.60977 6.63741 6.70921 6.75049 6.88743 7.09117 7.20668 7.60401 7.89946 8.36703 8.85253 9.44681 10.96989 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.002046 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.568783 B =13681.730091 C =14247.775216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.535 5.535 3 C 0.095 3.905 4 C -0.046 4.046 5 C -0.148 4.148 6 C -0.080 4.080 7 C -0.209 4.209 8 C 0.143 3.857 9 O -0.321 6.321 10 C 0.073 3.927 11 C -0.009 4.009 12 C -0.527 4.527 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.156 4.156 21 C 0.063 3.937 22 C -0.118 4.118 23 H 0.085 0.915 24 C -0.152 4.152 25 C 0.045 3.955 26 O -0.382 6.382 27 C 0.062 3.938 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.114 -18.931 18.106 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.032 4.032 4 C -0.046 4.046 5 C -0.167 4.167 6 C -0.098 4.098 7 C -0.228 4.228 8 C 0.097 3.903 9 O -0.234 6.234 10 C -0.001 4.001 11 C -0.046 4.046 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.708 3.292 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.175 4.175 21 C -0.065 4.065 22 C -0.137 4.137 23 H 0.103 0.897 24 C -0.190 4.190 25 C -0.032 4.032 26 O -0.301 6.301 27 C -0.015 4.015 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.128 -19.093 17.578 31.095 hybrid contribution -1.137 0.799 1.193 1.831 sum 15.991 -18.294 18.771 30.704 Atomic orbital electron populations 1.22493 0.86619 1.01880 1.01801 1.61972 1.08400 1.13116 1.42415 1.21084 1.00417 0.87736 0.94000 1.19313 0.93725 0.96407 0.95172 1.20751 1.00322 1.02662 0.92954 1.20911 0.95754 0.95752 0.97381 1.21413 0.96623 1.05367 0.99380 1.19095 0.86103 0.91376 0.93753 1.86111 1.34856 1.64114 1.38346 1.23073 1.00087 0.95441 0.81524 1.19581 0.90902 0.95545 0.98582 1.20840 1.06406 1.32784 0.96474 0.90734 1.24939 0.97710 0.94653 0.95729 1.69894 1.26040 1.34265 1.23306 0.86755 0.80498 0.79279 0.82710 1.20070 1.21155 1.18789 1.20249 0.98181 1.02385 0.96681 1.22200 0.94434 0.98186 0.91721 1.22557 0.96037 0.99899 0.95233 0.89708 1.22987 1.01347 0.96621 0.98070 1.23367 1.01258 0.96228 0.82341 1.89191 1.48366 1.68926 1.23603 1.23437 0.89938 0.90403 0.97710 0.95513 0.90219 0.91517 0.93815 0.89766 0.86403 0.86069 0.85163 0.92538 0.92498 0.95440 0.95887 0.92438 0.85937 0.90470 0.94274 0.90580 0.90456 0.89322 0.92429 0.91929 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.06 60.06 0.54 0.73 16 2 N -0.54 -4.69 4.55 -244.37 -1.11 -5.80 16 3 C 0.09 0.88 4.97 -4.97 -0.02 0.85 16 4 C -0.05 -0.54 4.88 -104.65 -0.51 -1.05 16 5 C -0.15 -1.73 9.70 -39.56 -0.38 -2.11 16 6 C -0.08 -1.01 10.04 -39.60 -0.40 -1.41 16 7 C -0.21 -3.16 9.04 -39.43 -0.36 -3.52 16 8 C 0.14 2.37 6.69 -39.22 -0.26 2.11 16 9 O -0.32 -6.21 10.14 -19.42 -0.20 -6.41 16 10 C 0.07 1.49 4.68 37.16 0.17 1.67 16 11 C -0.01 -0.21 4.41 -27.88 -0.12 -0.33 16 12 C -0.53 -14.81 9.66 -34.44 -0.33 -15.15 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 16 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 20 C -0.16 -2.19 7.96 -39.44 -0.31 -2.50 16 21 C 0.06 0.43 4.12 -3.83 -0.02 0.41 16 22 C -0.12 -0.79 3.14 -89.05 -0.28 -1.07 16 23 H 0.08 0.60 6.52 -51.93 -0.34 0.26 16 24 C -0.15 -0.83 6.74 -25.16 -0.17 -1.00 16 25 C 0.05 0.29 7.63 37.93 0.29 0.58 16 26 O -0.38 -3.69 11.66 -35.23 -0.41 -4.10 16 27 C 0.06 0.50 7.05 37.93 0.27 0.77 16 28 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 29 H 0.08 0.88 6.32 -51.93 -0.33 0.55 16 30 H 0.07 0.53 7.95 -51.93 -0.41 0.12 16 31 H 0.04 0.40 8.05 -51.93 -0.42 -0.02 16 32 H 0.08 0.68 6.31 -51.93 -0.33 0.35 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 36 H 0.06 1.12 7.66 -51.93 -0.40 0.72 16 37 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 38 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 39 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 1.63 8.03 -52.49 -0.42 1.21 16 42 H 0.08 0.49 7.74 -51.93 -0.40 0.09 16 43 H 0.04 0.26 8.05 -51.93 -0.42 -0.16 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.34 7.73 -51.93 -0.40 -0.06 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 49 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 387.75 15.07 5.84 5.84 Total: -1.00 -30.94 387.75 -10.07 -41.01 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.31 Total: -1.92 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.99 Total: -19.06 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.34 Total: -32.20 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.61 Total: -10.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.94 -10.07 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093839872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.657 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds