Wall clock time and date at job start Tue Mar 31 2020 13:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 111.00129 * 2 1 4 4 C 1.50705 * 109.47198 * 293.95793 * 3 2 1 5 5 C 1.38290 * 119.96586 * 269.72268 * 4 3 2 6 6 C 1.38247 * 120.10428 * 179.72562 * 5 4 3 7 7 C 1.38166 * 120.05812 * 0.54623 * 6 5 4 8 8 C 1.38712 * 119.94335 * 359.72919 * 7 6 5 9 9 O 1.35897 * 120.05363 * 179.97438 * 8 7 6 10 10 C 1.42897 * 117.00159 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.47294 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47059 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00518 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99519 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99635 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00141 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47275 * 89.99950 * 16 14 12 18 18 H 1.48507 * 109.46997 * 209.99878 * 16 14 12 19 19 H 1.48501 * 109.47337 * 329.99499 * 16 14 12 20 20 C 1.38116 * 119.97273 * 89.99651 * 4 3 2 21 21 C 1.46900 * 111.00025 * 123.95571 * 2 1 3 22 22 C 1.52996 * 109.46907 * 163.83991 * 21 2 1 23 23 H 1.08994 * 110.46299 * 54.68002 * 22 21 2 24 24 C 1.54515 * 110.50735 * 177.28709 * 22 21 2 25 25 C 1.54476 * 104.06255 * 118.78318 * 24 22 21 26 26 O 1.44424 * 104.80678 * 23.97547 * 25 24 22 27 27 C 1.44788 * 105.29477 * 319.45665 * 26 25 24 28 28 H 1.08997 * 109.47033 * 302.36680 * 1 2 3 29 29 H 1.09006 * 109.47220 * 62.36317 * 1 2 3 30 30 H 1.08997 * 109.47232 * 182.36174 * 1 2 3 31 31 H 1.09007 * 109.46486 * 53.95239 * 3 2 1 32 32 H 1.08992 * 109.47380 * 173.95036 * 3 2 1 33 33 H 1.07992 * 119.94604 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.96890 * 180.25297 * 6 5 4 35 35 H 1.07998 * 120.02839 * 179.70426 * 7 6 5 36 36 H 1.08993 * 109.47176 * 299.99761 * 10 9 8 37 37 H 1.09004 * 109.46790 * 59.99936 * 10 9 8 38 38 H 1.08993 * 109.47355 * 300.00313 * 11 10 9 39 39 H 1.09000 * 109.46724 * 60.00052 * 11 10 9 40 40 H 0.97003 * 119.99820 * 179.97438 * 15 14 12 41 41 H 1.08001 * 120.03176 * 359.97438 * 20 4 3 42 42 H 1.08993 * 109.46951 * 43.83441 * 21 2 1 43 43 H 1.08997 * 109.46930 * 283.84036 * 21 2 1 44 44 H 1.09002 * 110.50519 * 237.42262 * 24 22 21 45 45 H 1.09000 * 110.51280 * 359.97438 * 24 22 21 46 46 H 1.08998 * 110.37525 * 142.81061 * 25 24 22 47 47 H 1.09003 * 110.36758 * 265.14634 * 25 24 22 48 48 H 1.09006 * 110.42273 * 281.77578 * 27 26 25 49 49 H 1.08996 * 110.49077 * 159.32686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4973 1.9694 -2.3783 6 6 2.1686 2.5835 -3.5725 7 6 0.9844 3.2861 -3.6864 8 6 0.1224 3.3704 -2.6029 9 8 -1.0427 4.0613 -2.7123 10 6 -1.3166 4.6759 -3.9729 11 6 -2.6618 5.4017 -3.9049 12 6 -2.9503 6.0504 -5.2342 13 1 -2.2451 5.9542 -6.0465 14 6 -4.1148 6.7667 -5.4134 15 7 -4.3669 7.3323 -6.5737 16 14 -5.3343 6.9336 -4.0083 17 1 -5.0070 8.1420 -3.2097 18 1 -6.7081 7.0606 -4.5577 19 1 -5.2574 5.7310 -3.1406 20 6 0.4519 2.7484 -1.4071 21 6 1.9954 -0.7660 1.1376 22 6 3.4716 -1.0876 0.8963 23 1 4.0328 -0.1748 0.6965 24 6 4.0681 -1.8351 2.1100 25 6 4.5137 -3.1960 1.5307 26 8 4.7154 -2.9493 0.1220 27 6 3.6243 -2.0840 -0.2743 28 1 -0.3633 0.5501 0.8680 29 1 -0.3634 0.4767 -0.9105 30 1 -0.3633 -1.0268 0.0423 31 1 1.5611 1.9273 0.8310 32 1 3.0797 1.3445 0.1083 33 1 3.4256 1.4248 -2.2897 34 1 2.8403 2.5179 -4.4157 35 1 0.7303 3.7696 -4.6180 36 1 -0.5287 5.3916 -4.2071 37 1 -1.3555 3.9114 -4.7490 38 1 -3.4496 4.6858 -3.6710 39 1 -2.6233 6.1661 -3.1288 40 1 -5.1863 7.8359 -6.6999 41 1 -0.2178 2.8123 -0.5623 42 1 1.4336 -1.6942 1.2417 43 1 1.8961 -0.1770 2.0493 44 1 4.9242 -1.2917 2.5101 45 1 3.3114 -1.9751 2.8819 46 1 5.4444 -3.5203 1.9962 47 1 3.7345 -3.9441 1.6771 48 1 2.7087 -2.6611 -0.4032 49 1 3.8724 -1.5539 -1.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093839872.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:11 Heat of formation + Delta-G solvation = -82.403428 kcal Electronic energy + Delta-G solvation = -26176.545148 eV Core-core repulsion = 22488.740668 eV Total energy + Delta-G solvation = -3687.804479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18819 -40.45564 -39.11708 -37.62075 -35.43029 -33.79604 -32.94329 -32.23996 -30.79872 -30.22632 -28.06372 -27.28557 -26.75494 -24.15311 -23.58032 -23.24574 -22.59839 -21.58524 -20.94498 -19.31724 -18.39792 -17.50653 -17.04561 -16.97430 -16.89041 -16.82180 -16.39760 -16.26885 -15.90612 -15.70868 -15.45647 -14.95454 -14.78594 -14.42425 -14.36054 -14.20299 -13.85086 -13.64303 -13.23996 -13.11008 -13.02853 -12.83529 -12.63687 -12.48811 -12.42294 -12.35692 -12.12395 -12.03210 -11.87581 -11.83683 -11.69139 -11.56963 -11.40819 -11.30040 -10.83345 -10.69192 -9.84306 -9.26546 -9.09572 -8.36594 -6.43524 0.34109 0.54483 1.34495 1.35959 1.48668 2.31556 2.31811 2.68200 2.98220 3.07800 3.19618 3.73147 3.80719 3.84982 3.90371 4.03868 4.10777 4.17217 4.20016 4.21258 4.30224 4.38370 4.41855 4.48229 4.50590 4.52979 4.62179 4.64477 4.68324 4.72752 4.80155 4.82051 4.89792 4.94367 5.02853 5.07673 5.09222 5.13044 5.14529 5.27793 5.28574 5.41585 5.47904 5.54779 5.65001 5.88581 5.92767 6.02615 6.12309 6.14484 6.52500 6.62046 7.21601 8.79089 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.002046 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.568783 B =13681.730091 C =14247.775216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.098 3.902 4 C -0.040 4.040 5 C -0.140 4.140 6 C -0.081 4.081 7 C -0.224 4.224 8 C 0.107 3.893 9 O -0.336 6.336 10 C 0.088 3.912 11 C -0.006 4.006 12 C -0.538 4.538 13 H 0.041 0.959 14 C 0.013 3.987 15 N -0.941 5.941 16 Si 0.949 3.051 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.251 1.251 20 C -0.157 4.157 21 C 0.067 3.933 22 C -0.113 4.113 23 H 0.084 0.916 24 C -0.146 4.146 25 C 0.038 3.962 26 O -0.410 6.410 27 C 0.060 3.940 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.270 0.730 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.152 -20.310 20.928 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.029 4.029 4 C -0.040 4.040 5 C -0.158 4.158 6 C -0.099 4.099 7 C -0.244 4.244 8 C 0.062 3.938 9 O -0.251 6.251 10 C 0.013 3.987 11 C -0.043 4.043 12 C -0.576 4.576 13 H 0.060 0.940 14 C -0.185 4.185 15 N -0.581 5.581 16 Si 0.772 3.228 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.175 1.175 20 C -0.176 4.176 21 C -0.061 4.061 22 C -0.132 4.132 23 H 0.103 0.897 24 C -0.184 4.184 25 C -0.039 4.039 26 O -0.330 6.330 27 C -0.016 4.016 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.143 0.857 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.191 -20.491 20.414 34.169 hybrid contribution -1.299 1.109 0.298 1.734 sum 16.892 -19.382 20.712 33.015 Atomic orbital electron populations 1.22435 0.87030 1.02343 1.00787 1.61944 1.08100 1.12838 1.43709 1.21098 1.01491 0.87889 0.92443 1.19633 0.92582 0.95299 0.96520 1.21131 1.00996 1.01476 0.92203 1.21212 0.95048 0.94867 0.98759 1.21477 0.97705 1.06389 0.98780 1.19413 0.85868 0.93075 0.95415 1.86018 1.36796 1.65161 1.37116 1.22639 0.98245 0.95309 0.82463 1.19437 0.92918 0.95645 0.96305 1.21110 1.05946 1.33104 0.97429 0.94047 1.25892 0.99866 0.94210 0.98533 1.70027 1.27043 1.35388 1.25637 0.85670 0.77813 0.79976 0.79315 1.18916 1.20382 1.17452 1.20399 0.99085 1.02276 0.95864 1.22214 0.94386 0.98234 0.91240 1.22504 0.95979 0.99540 0.95166 0.89731 1.22969 1.01909 0.95756 0.97784 1.23566 1.02170 0.97105 0.81026 1.89161 1.49002 1.69352 1.25437 1.23445 0.89475 0.90598 0.98125 0.95099 0.92510 0.90488 0.93412 0.88029 0.83627 0.83698 0.86120 0.92551 0.92626 0.95434 0.95521 0.92073 0.85657 0.89835 0.93304 0.89976 0.88979 0.88355 0.91757 0.92233 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.06 127.69 1.16 1.52 16 2 N -0.54 -8.14 4.55 -927.05 -4.21 -12.35 16 3 C 0.10 1.53 4.97 85.56 0.42 1.96 16 4 C -0.04 -0.86 4.88 -19.88 -0.10 -0.96 16 5 C -0.14 -2.91 9.70 22.28 0.22 -2.69 16 6 C -0.08 -1.93 10.04 22.25 0.22 -1.70 16 7 C -0.22 -6.82 9.04 22.37 0.20 -6.62 16 8 C 0.11 3.58 6.69 22.51 0.15 3.73 16 9 O -0.34 -13.24 10.14 -92.39 -0.94 -14.17 16 10 C 0.09 3.71 4.68 71.98 0.34 4.04 16 11 C -0.01 -0.27 4.41 29.85 0.13 -0.14 16 12 C -0.54 -31.10 9.66 25.60 0.25 -30.85 16 13 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 14 C 0.01 0.77 5.47 84.66 0.46 1.24 16 15 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 16 Si 0.95 44.27 27.47 68.60 1.88 46.16 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 20 C -0.16 -4.30 7.96 22.36 0.18 -4.12 16 21 C 0.07 0.71 4.12 86.30 0.36 1.06 16 22 C -0.11 -1.20 3.14 -9.78 -0.03 -1.23 16 23 H 0.08 0.92 6.52 -2.39 -0.02 0.91 16 24 C -0.15 -1.18 6.74 31.61 0.21 -0.97 16 25 C 0.04 0.41 7.63 72.48 0.55 0.96 16 26 O -0.41 -7.34 11.66 -148.98 -1.74 -9.08 16 27 C 0.06 0.88 7.05 72.48 0.51 1.39 16 28 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 29 H 0.06 1.21 6.32 -2.38 -0.02 1.19 16 30 H 0.08 1.09 7.95 -2.39 -0.02 1.07 16 31 H 0.05 0.73 8.05 -2.38 -0.02 0.72 16 32 H 0.10 1.27 6.31 -2.39 -0.02 1.26 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.12 3.79 6.30 -2.91 -0.02 3.78 16 36 H 0.06 2.32 7.66 -2.39 -0.02 2.30 16 37 H 0.06 2.30 7.66 -2.38 -0.02 2.28 16 38 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 39 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.13 3.27 8.03 -2.91 -0.02 3.24 16 42 H 0.08 0.81 7.74 -2.39 -0.02 0.80 16 43 H 0.05 0.46 8.05 -2.39 -0.02 0.44 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.09 0.49 7.73 -2.39 -0.02 0.47 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.06 0.88 7.79 -2.38 -0.02 0.86 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -67.82 387.75 1.39 -66.43 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.85 Total: 14.42 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 5.24 Total: -33.37 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -3.91 Total: -70.39 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -2.67 Total: -23.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -67.82 1.39 -66.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093839872.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.971 kcal (2) G-P(sol) polarization free energy of solvation -67.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds