Wall clock time and date at job start Tue Mar 31 2020 14:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35987 * 117.00257 * 2 1 4 4 C 1.38571 * 120.07672 * 0.02562 * 3 2 1 5 5 C 1.38238 * 120.00409 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.14417 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.92801 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46798 * 89.99955 * 7 6 5 9 9 C 1.52997 * 109.47397 * 185.17548 * 8 7 6 10 10 H 1.09004 * 109.58400 * 54.45241 * 9 8 7 11 11 C 1.53196 * 109.58822 * 294.17555 * 9 8 7 12 12 C 1.53045 * 109.31213 * 185.56961 * 11 9 8 13 13 C 1.53048 * 109.53171 * 61.36848 * 12 11 9 14 14 C 1.53183 * 109.31065 * 298.62867 * 13 12 11 15 15 N 1.46919 * 109.59200 * 174.73990 * 9 8 7 16 16 C 1.36940 * 120.63174 * 353.39993 * 15 9 8 17 17 H 1.08004 * 119.99627 * 30.69622 * 16 15 9 18 18 C 1.38811 * 120.00111 * 210.69989 * 16 15 9 19 19 N 1.31613 * 120.00367 * 13.66583 * 18 16 15 20 20 Si 1.86804 * 119.99721 * 193.66530 * 18 16 15 21 21 H 1.48496 * 109.47176 * 59.99731 * 20 18 16 22 22 H 1.48500 * 109.47053 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47071 * 299.99954 * 20 18 16 24 24 C 1.38243 * 120.14785 * 0.02562 * 6 5 4 25 25 C 1.38566 * 120.00128 * 359.71996 * 24 6 5 26 26 O 1.35990 * 120.07746 * 180.27655 * 25 24 6 27 27 C 1.42901 * 117.00063 * 0.27388 * 26 25 24 28 28 H 1.09000 * 109.47137 * 59.99431 * 1 2 3 29 29 H 1.08998 * 109.47416 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46724 * 300.00358 * 1 2 3 31 31 H 1.08000 * 119.99645 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.92786 * 179.97438 * 5 4 3 33 33 H 1.08991 * 109.47483 * 210.00394 * 7 6 5 34 34 H 1.09001 * 109.46968 * 330.00588 * 7 6 5 35 35 H 1.08996 * 109.48029 * 305.18375 * 8 7 6 36 36 H 1.09007 * 109.46750 * 65.18147 * 8 7 6 37 37 H 1.08995 * 109.49668 * 305.52426 * 11 9 8 38 38 H 1.09000 * 109.49542 * 65.62207 * 11 9 8 39 39 H 1.08998 * 109.46016 * 181.38238 * 12 11 9 40 40 H 1.09000 * 109.46317 * 301.35984 * 12 11 9 41 41 H 1.08996 * 109.49856 * 58.58509 * 13 12 11 42 42 H 1.09005 * 109.49059 * 178.65002 * 13 12 11 43 43 H 1.09007 * 109.58633 * 174.42922 * 14 13 12 44 44 H 1.09004 * 109.59022 * 294.70782 * 14 13 12 45 45 H 0.96996 * 120.00327 * 180.02562 * 19 18 16 46 46 H 1.07998 * 119.99807 * 179.97438 * 24 6 5 47 47 H 1.08997 * 109.47268 * 300.00421 * 27 26 25 48 48 H 1.09000 * 109.47060 * 60.00037 * 27 26 25 49 49 H 1.08996 * 109.47393 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2934 2.3748 0.0005 5 6 1.9226 3.6057 0.0000 6 6 3.3031 3.6797 -0.0005 7 6 3.9840 5.0242 -0.0005 8 6 4.2149 5.4788 1.4420 9 6 4.7876 6.8975 1.4442 10 1 4.1333 7.5565 0.8734 11 6 6.1839 6.8888 0.8139 12 6 6.8068 8.2806 0.9444 13 6 6.9474 8.6415 2.4250 14 6 5.5598 8.6702 3.0734 15 7 4.8926 7.3843 2.8264 16 6 4.3819 6.6520 3.8647 17 1 4.3547 5.5740 3.8032 18 6 3.8991 7.2950 4.9962 19 7 3.6801 8.5926 4.9727 20 14 3.5604 6.3187 6.5523 21 1 4.8152 5.6729 7.0145 22 1 3.0556 7.2314 7.6093 23 1 2.5417 5.2756 6.2704 24 6 4.0604 2.5232 -0.0011 25 6 3.4361 1.2862 0.0048 26 8 4.1795 0.1475 0.0100 27 6 5.6003 0.3004 0.0151 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2148 2.3197 0.0014 32 1 1.3344 4.5115 0.0000 33 1 4.9418 4.9464 -0.5148 34 1 3.3539 5.7505 -0.5139 35 1 3.2684 5.4682 1.9824 36 1 4.9183 4.8024 1.9279 37 1 6.8105 6.1601 1.3280 38 1 6.1055 6.6227 -0.2402 39 1 7.7905 8.2836 0.4749 40 1 6.1669 9.0126 0.4515 41 1 7.5668 7.8963 2.9239 42 1 7.4131 9.6228 2.5176 43 1 5.6614 8.8291 4.1471 44 1 4.9700 9.4773 2.6389 45 1 3.3431 9.0420 5.7635 46 1 5.1387 2.5838 -0.0019 47 1 5.9100 0.8484 -0.8748 48 1 5.9032 0.8519 0.9051 49 1 6.0715 -0.6825 0.0184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101908207.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:44 Heat of formation + Delta-G solvation = -43.530471 kcal Electronic energy + Delta-G solvation = -27436.345580 eV Core-core repulsion = 23750.226758 eV Total energy + Delta-G solvation = -3686.118821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.53803 -38.44688 -38.07340 -37.04637 -33.61027 -33.01394 -30.78683 -30.28838 -29.81353 -28.25378 -27.30433 -26.62664 -25.04761 -23.66538 -22.14823 -22.01661 -21.09945 -19.96448 -19.02172 -18.38779 -17.03626 -16.69060 -16.31526 -16.07013 -15.27941 -15.12507 -14.74858 -14.54330 -14.28448 -14.06824 -13.87319 -13.56709 -13.28645 -13.17527 -12.76663 -12.60224 -12.46698 -12.25375 -12.13481 -11.81170 -11.61749 -11.33112 -11.22804 -11.11000 -10.92937 -10.79797 -10.72349 -10.62560 -10.39400 -10.21266 -10.12868 -9.93412 -9.86735 -9.35511 -9.14332 -8.61485 -8.40985 -7.67174 -6.53899 -5.72544 -3.17578 1.35063 1.51717 3.25042 3.26694 3.40832 3.46121 3.47709 3.77581 4.53087 4.77211 4.85952 4.96164 5.05642 5.08316 5.13581 5.14999 5.31649 5.34489 5.37861 5.41670 5.45203 5.49549 5.57119 5.66149 5.72545 5.76721 5.80951 5.98818 6.09658 6.16055 6.25515 6.32196 6.35254 6.41422 6.49837 6.56062 6.67189 6.75503 6.76523 6.82290 6.85268 6.93901 7.03337 7.15251 7.20759 7.47494 7.58965 7.74146 7.86361 8.53486 9.28579 9.92207 10.50486 11.35802 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.003632 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.318290 B = 7706.997388 C = 8838.846112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.084 3.916 4 C -0.169 4.169 5 C -0.112 4.112 6 C -0.062 4.062 7 C -0.080 4.080 8 C -0.100 4.100 9 C 0.176 3.824 10 H 0.023 0.977 11 C -0.130 4.130 12 C -0.110 4.110 13 C -0.143 4.143 14 C 0.173 3.827 15 N -0.588 5.588 16 C -0.248 4.248 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.904 5.904 20 Si 0.897 3.103 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.169 4.169 25 C 0.098 3.902 26 O -0.310 6.310 27 C 0.026 3.974 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.016 0.984 45 H 0.253 0.747 46 H 0.134 0.866 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -12.055 -12.716 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.039 3.961 4 C -0.187 4.187 5 C -0.131 4.131 6 C -0.062 4.062 7 C -0.117 4.117 8 C -0.138 4.138 9 C 0.069 3.931 10 H 0.041 0.959 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.183 4.183 14 C 0.047 3.953 15 N -0.311 5.311 16 C -0.378 4.378 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.549 5.549 20 Si 0.727 3.273 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C -0.188 4.188 25 C 0.053 3.947 26 O -0.224 6.224 27 C -0.069 4.069 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.152 0.848 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.490 -12.339 -12.561 17.614 hybrid contribution -0.223 -0.077 0.939 0.968 sum -0.713 -12.415 -11.622 17.021 Atomic orbital electron populations 1.23019 0.78954 1.03604 1.01196 1.86136 1.20699 1.26182 1.89448 1.18189 0.89093 0.85075 1.03696 1.21027 0.99724 0.91540 1.06445 1.20812 0.94084 0.97064 1.01119 1.19743 0.93312 0.95105 0.98085 1.20707 0.99736 0.92183 0.99116 1.21632 1.02310 0.96609 0.93230 1.20424 0.92353 0.92862 0.87463 0.95924 1.22085 0.99165 0.96792 0.98863 1.21394 0.98751 0.97273 0.97301 1.22190 1.01253 0.99249 0.95575 1.20737 0.87370 0.86794 1.00365 1.44054 1.65092 1.21750 1.00198 1.19094 1.33776 0.90072 0.94832 0.91587 1.25090 0.98810 0.95862 0.99644 1.69994 1.48206 1.08189 1.28471 0.86452 0.78176 0.79209 0.83436 1.21098 1.21680 1.20902 1.20964 1.00306 0.90530 1.06978 1.18205 0.88148 0.85995 1.02325 1.86132 1.18559 1.28469 1.89252 1.23047 0.78816 1.03569 1.01451 0.92909 0.88523 0.92738 0.85016 0.85402 0.91388 0.91114 0.90688 0.92251 0.92604 0.93356 0.94071 0.93016 0.92975 0.93664 0.89848 0.96613 0.93726 0.84845 0.92803 0.92501 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.26 10.28 -34.20 -0.35 -4.62 16 3 C 0.08 1.22 6.70 -39.12 -0.26 0.96 16 4 C -0.17 -2.20 9.04 -39.46 -0.36 -2.56 16 5 C -0.11 -1.55 9.69 -39.58 -0.38 -1.93 16 6 C -0.06 -0.89 5.13 -104.61 -0.54 -1.43 16 7 C -0.08 -1.15 4.99 -27.88 -0.14 -1.29 16 8 C -0.10 -1.84 3.43 -26.73 -0.09 -1.93 16 9 C 0.18 3.56 2.95 -67.60 -0.20 3.36 16 10 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 11 C -0.13 -2.25 5.01 -26.61 -0.13 -2.39 16 12 C -0.11 -1.89 5.88 -26.68 -0.16 -2.05 16 13 C -0.14 -2.81 6.08 -26.61 -0.16 -2.97 16 14 C 0.17 4.16 5.26 -3.70 -0.02 4.14 16 15 N -0.59 -14.50 2.99 -164.75 -0.49 -14.99 16 16 C -0.25 -6.66 8.47 -15.06 -0.13 -6.79 16 17 H 0.07 1.75 6.34 -52.48 -0.33 1.42 16 18 C 0.00 0.12 4.98 -17.43 -0.09 0.04 16 19 N -0.90 -26.23 11.20 55.49 0.62 -25.60 16 20 Si 0.90 21.86 29.58 -169.99 -5.03 16.84 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.17 -2.35 8.69 -39.46 -0.34 -2.70 16 25 C 0.10 1.45 6.70 -39.12 -0.26 1.19 16 26 O -0.31 -4.38 10.28 -34.21 -0.35 -4.73 16 27 C 0.03 0.26 9.81 101.05 0.99 1.25 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 32 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.07 0.89 6.93 -51.93 -0.36 0.53 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.07 1.56 7.31 -51.93 -0.38 1.18 16 36 H 0.06 1.13 7.73 -51.93 -0.40 0.73 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.72 7.01 -51.93 -0.36 0.35 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 2.24 6.17 -51.93 -0.32 1.92 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 47 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 48 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -31.41 380.75 -9.33 -40.74 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.19 Total: 0.46 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -1.28 Total: -13.84 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.13 Total: -40.59 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.70 Total: -9.35 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.41 -9.33 -40.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101908207.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.786 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds