Wall clock time and date at job start Tue Mar 31 2020 12:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47015 * 120.00082 * 9 7 5 12 12 H 1.48497 * 109.47189 * 239.99898 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 C 1.50703 * 109.47148 * 180.28037 * 15 13 3 17 17 C 1.38269 * 119.94053 * 269.72351 * 16 15 13 18 18 C 1.38150 * 120.05233 * 179.72151 * 17 16 15 19 19 C 1.38730 * 119.94235 * 0.57711 * 18 17 16 20 20 O 1.35897 * 120.05179 * 179.68247 * 19 18 17 21 21 C 1.42902 * 117.00220 * 0.02562 * 20 19 18 22 22 C 1.53004 * 109.47177 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47188 * 175.00065 * 22 21 20 24 24 C 1.53003 * 109.47079 * 295.00216 * 22 21 20 25 25 C 1.38732 * 119.88927 * 359.69574 * 19 18 17 26 26 C 1.38141 * 119.94448 * 0.02562 * 25 19 18 27 27 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 28 28 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 30 30 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 33 33 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 34 34 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 36 36 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 37 37 H 1.08001 * 119.97509 * 359.97438 * 17 16 15 38 38 H 1.08001 * 120.02112 * 180.25336 * 18 17 16 39 39 H 1.08998 * 109.47050 * 300.00466 * 21 20 19 40 40 H 1.08997 * 109.47015 * 60.00633 * 21 20 19 41 41 H 1.08998 * 109.46788 * 55.00148 * 22 21 20 42 42 H 1.08994 * 109.47140 * 59.99828 * 23 22 21 43 43 H 1.09001 * 109.47460 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46771 * 300.00219 * 23 22 21 45 45 H 1.09004 * 109.46836 * 59.99767 * 24 22 21 46 46 H 1.09002 * 109.47098 * 179.97438 * 24 22 21 47 47 H 1.08994 * 109.46871 * 299.99941 * 24 22 21 48 48 H 1.07998 * 120.02335 * 179.97438 * 25 19 18 49 49 H 1.08006 * 119.96925 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.6016 1.2425 -2.4156 11 1 5.9217 1.4170 -4.7371 12 1 6.6206 3.3980 -3.5255 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 6 2.3070 2.2335 3.6177 17 6 3.5822 2.2537 4.1518 18 6 3.8807 3.1051 5.1981 19 6 2.8965 3.9315 5.7207 20 8 3.1860 4.7652 6.7541 21 6 4.5248 4.7392 7.2532 22 6 4.6586 5.7360 8.4062 23 6 6.0545 5.6196 9.0216 24 6 4.4508 7.1571 7.8786 25 6 1.6163 3.9052 5.1867 26 6 1.3245 3.0563 4.1367 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 3.6753 3.5162 -4.4439 35 1 0.9376 1.0142 2.5258 36 1 2.6158 0.4209 2.5344 37 1 4.3466 1.6064 3.7481 38 1 4.8780 3.1234 5.6122 39 1 4.7598 3.7368 7.6109 40 1 5.2154 5.0115 6.4551 41 1 3.9075 5.5167 9.1651 42 1 6.8055 5.8388 8.2628 43 1 6.1498 6.3294 9.8433 44 1 6.2025 4.6072 9.3975 45 1 3.4562 7.2400 7.4401 46 1 4.5457 7.8672 8.7001 47 1 5.2018 7.3763 7.1197 48 1 0.8484 4.5473 5.5921 49 1 0.3279 3.0352 3.7209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106927931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:35 Heat of formation + Delta-G solvation = -69.501316 kcal Electronic energy + Delta-G solvation = -26452.244490 eV Core-core repulsion = 22764.999489 eV Total energy + Delta-G solvation = -3687.245002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22515 -39.11765 -37.65421 -35.52593 -35.14393 -32.86428 -31.77608 -30.91216 -30.04114 -28.01743 -27.47274 -26.90032 -25.81149 -23.03327 -22.74414 -22.65445 -21.11778 -20.37520 -18.33252 -18.10129 -16.54531 -16.42905 -16.22683 -15.96870 -15.68334 -14.99111 -14.66833 -14.47385 -14.38604 -14.11661 -13.82272 -13.36974 -13.33156 -13.26904 -13.04617 -12.78885 -12.54507 -12.43878 -12.27582 -12.01013 -11.74016 -11.50331 -11.48397 -11.37870 -11.31503 -11.10889 -11.08868 -10.87791 -10.73952 -10.68910 -10.59915 -10.48546 -10.10498 -9.58711 -8.87777 -8.83336 -8.41745 -7.91966 -7.60725 -6.02167 -4.06554 1.50402 1.56355 3.11540 3.30393 3.37785 3.41195 3.51430 3.78910 4.15216 4.45621 4.47102 4.50765 4.75115 4.91367 4.93417 4.99171 5.12638 5.14048 5.23130 5.24540 5.32567 5.33785 5.38743 5.42059 5.51286 5.53348 5.59325 5.60896 5.68212 5.72428 5.77086 5.78686 5.87198 5.96346 6.03179 6.07142 6.17230 6.26051 6.37633 6.47052 6.52071 6.80121 6.87916 7.12007 7.46631 7.49166 7.60277 7.94964 8.26834 8.48764 8.93944 9.17279 9.58594 11.05942 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002753 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.061324 B =10169.783789 C =11545.693750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.533 6.533 15 C -0.101 4.101 16 C -0.090 4.090 17 C -0.065 4.065 18 C -0.206 4.206 19 C 0.122 3.878 20 O -0.316 6.316 21 C 0.063 3.937 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.148 4.148 25 C -0.151 4.151 26 C -0.067 4.067 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.127 0.873 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 -2.263 22.602 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.410 6.410 15 C -0.141 4.141 16 C -0.090 4.090 17 C -0.083 4.083 18 C -0.225 4.225 19 C 0.077 3.923 20 O -0.230 6.230 21 C -0.013 4.013 22 C -0.113 4.113 23 C -0.204 4.204 24 C -0.205 4.205 25 C -0.170 4.170 26 C -0.085 4.085 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.145 0.855 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.699 -1.403 22.506 22.614 hybrid contribution 1.231 -0.322 -0.621 1.416 sum -0.469 -1.725 21.885 21.958 Atomic orbital electron populations 1.22226 0.96890 1.01348 1.02305 1.21405 0.93452 0.84326 1.02611 1.48264 1.64014 1.13221 1.07715 1.19250 0.96175 0.93640 0.78235 1.21477 0.96967 1.31672 1.06084 0.92502 1.24940 0.97801 0.94996 0.96461 1.69944 1.35567 1.33585 1.14351 0.86458 0.84750 0.78029 0.78275 1.19840 1.20987 1.20910 1.20225 0.78783 0.87029 0.84801 1.90691 1.45220 1.17974 1.87105 1.20739 1.03444 0.98208 0.91720 1.19284 0.93973 0.99020 0.96767 1.20778 0.95760 0.97416 0.94353 1.21120 0.98996 1.00919 1.01445 1.18919 0.94139 0.90745 0.88485 1.86007 1.30795 1.59190 1.47023 1.22877 0.82437 0.99539 0.96401 1.21118 0.98405 0.95318 0.96432 1.21786 0.95510 1.02142 1.00936 1.21826 1.02704 0.95031 1.00953 1.20299 0.94589 1.02717 0.99353 1.20765 0.99200 0.94088 0.94448 0.92088 0.92228 0.93052 0.90067 0.91727 0.95106 0.93978 0.92821 0.88781 0.88784 0.85988 0.85875 0.92202 0.91967 0.90194 0.92248 0.91774 0.92388 0.91750 0.92596 0.92604 0.85526 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.64 2.46 -175.06 -0.43 -13.07 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.51 10.54 7.67 -10.98 -0.08 10.46 16 14 O -0.53 -13.72 15.61 5.55 0.09 -13.64 16 15 C -0.10 -1.51 4.38 -29.03 -0.13 -1.64 16 16 C -0.09 -1.39 4.37 -104.60 -0.46 -1.84 16 17 C -0.06 -0.97 9.69 -39.60 -0.38 -1.35 16 18 C -0.21 -2.86 9.04 -39.43 -0.36 -3.21 16 19 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 20 O -0.32 -4.05 9.67 -19.42 -0.19 -4.23 16 21 C 0.06 0.62 4.12 37.16 0.15 0.77 16 22 C -0.09 -0.75 3.16 -90.62 -0.29 -1.04 16 23 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 24 C -0.15 -1.23 9.09 37.16 0.34 -0.89 16 25 C -0.15 -2.12 9.99 -39.43 -0.39 -2.51 16 26 C -0.07 -0.97 9.69 -39.61 -0.38 -1.35 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.63 7.20 -51.93 -0.37 0.26 16 30 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.06 0.83 6.45 -51.93 -0.33 0.50 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.09 1.16 7.10 -51.92 -0.37 0.79 16 36 H 0.09 1.21 7.35 -51.93 -0.38 0.83 16 37 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.12 1.43 6.30 -52.49 -0.33 1.10 16 39 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 40 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 49 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -34.41 401.67 -9.17 -43.57 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.41 Total: -0.46 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.99 Total: -9.11 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.31 Total: -39.24 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.10 Total: -17.87 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.41 -9.17 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106927931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.928 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds