Wall clock time and date at job start Tue Mar 31 2020 12:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47015 * 120.00082 * 9 7 5 12 12 H 1.48497 * 109.47189 * 239.99898 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 C 1.50703 * 109.47148 * 180.28037 * 15 13 3 17 17 C 1.38269 * 119.94053 * 269.72351 * 16 15 13 18 18 C 1.38150 * 120.05233 * 179.72151 * 17 16 15 19 19 C 1.38730 * 119.94235 * 0.57711 * 18 17 16 20 20 O 1.35897 * 120.05179 * 179.68247 * 19 18 17 21 21 C 1.42902 * 117.00220 * 0.02562 * 20 19 18 22 22 C 1.53004 * 109.47177 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47188 * 175.00065 * 22 21 20 24 24 C 1.53003 * 109.47079 * 295.00216 * 22 21 20 25 25 C 1.38732 * 119.88927 * 359.69574 * 19 18 17 26 26 C 1.38141 * 119.94448 * 0.02562 * 25 19 18 27 27 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 28 28 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 30 30 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 33 33 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 34 34 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 36 36 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 37 37 H 1.08001 * 119.97509 * 359.97438 * 17 16 15 38 38 H 1.08001 * 120.02112 * 180.25336 * 18 17 16 39 39 H 1.08998 * 109.47050 * 300.00466 * 21 20 19 40 40 H 1.08997 * 109.47015 * 60.00633 * 21 20 19 41 41 H 1.08998 * 109.46788 * 55.00148 * 22 21 20 42 42 H 1.08994 * 109.47140 * 59.99828 * 23 22 21 43 43 H 1.09001 * 109.47460 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46771 * 300.00219 * 23 22 21 45 45 H 1.09004 * 109.46836 * 59.99767 * 24 22 21 46 46 H 1.09002 * 109.47098 * 179.97438 * 24 22 21 47 47 H 1.08994 * 109.46871 * 299.99941 * 24 22 21 48 48 H 1.07998 * 120.02335 * 179.97438 * 25 19 18 49 49 H 1.08006 * 119.96925 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.6016 1.2425 -2.4156 11 1 5.9217 1.4170 -4.7371 12 1 6.6206 3.3980 -3.5255 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 6 2.3070 2.2335 3.6177 17 6 3.5822 2.2537 4.1518 18 6 3.8807 3.1051 5.1981 19 6 2.8965 3.9315 5.7207 20 8 3.1860 4.7652 6.7541 21 6 4.5248 4.7392 7.2532 22 6 4.6586 5.7360 8.4062 23 6 6.0545 5.6196 9.0216 24 6 4.4508 7.1571 7.8786 25 6 1.6163 3.9052 5.1867 26 6 1.3245 3.0563 4.1367 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 3.6753 3.5162 -4.4439 35 1 0.9376 1.0142 2.5258 36 1 2.6158 0.4209 2.5344 37 1 4.3466 1.6064 3.7481 38 1 4.8780 3.1234 5.6122 39 1 4.7598 3.7368 7.6109 40 1 5.2154 5.0115 6.4551 41 1 3.9075 5.5167 9.1651 42 1 6.8055 5.8388 8.2628 43 1 6.1498 6.3294 9.8433 44 1 6.2025 4.6072 9.3975 45 1 3.4562 7.2400 7.4401 46 1 4.5457 7.8672 8.7001 47 1 5.2018 7.3763 7.1197 48 1 0.8484 4.5473 5.5921 49 1 0.3279 3.0352 3.7209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106927931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:34 Heat of formation + Delta-G solvation = -88.628809 kcal Electronic energy + Delta-G solvation = -26453.073921 eV Core-core repulsion = 22764.999489 eV Total energy + Delta-G solvation = -3688.074432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31412 -40.57267 -38.72820 -36.88043 -36.19804 -34.93258 -33.04354 -31.98017 -31.52524 -29.52806 -28.14016 -28.07652 -27.04455 -24.86105 -24.06258 -23.74369 -22.29409 -21.09368 -19.84503 -19.14132 -18.61659 -17.85359 -17.41933 -17.15685 -16.90724 -16.45356 -16.14589 -15.73767 -15.37570 -15.14901 -14.95191 -14.68167 -14.54190 -14.43194 -14.25555 -14.05597 -13.63357 -13.54709 -13.26182 -13.24795 -13.10227 -12.99898 -12.78192 -12.68629 -12.59513 -12.33241 -12.18730 -12.09968 -12.03912 -11.94988 -11.78650 -11.67366 -11.55494 -11.49124 -10.65163 -10.56055 -9.92013 -9.39147 -9.01819 -8.22172 -6.36956 0.42200 0.44803 1.34990 1.37665 1.49377 1.91655 2.22370 2.32360 2.46307 2.87857 3.07133 3.73525 3.79306 3.83507 3.91520 3.95425 3.99860 4.10932 4.20479 4.28169 4.36930 4.44096 4.48111 4.49991 4.59645 4.64581 4.68444 4.72268 4.76754 4.81350 4.96131 4.98604 4.99414 5.03414 5.08665 5.10035 5.16871 5.23599 5.30732 5.35735 5.37399 5.40820 5.44288 5.59755 5.68945 5.84220 5.89726 6.07955 6.47379 6.71805 6.86598 7.29558 7.56327 8.84980 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.002753 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.061324 B =10169.783789 C =11545.693750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.497 3.503 14 O -0.594 6.594 15 C -0.084 4.084 16 C -0.111 4.111 17 C -0.079 4.079 18 C -0.212 4.212 19 C 0.115 3.885 20 O -0.325 6.325 21 C 0.055 3.945 22 C -0.091 4.091 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.163 4.163 26 C -0.075 4.075 27 H 0.035 0.965 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.020 0.980 33 H -0.007 1.007 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.051 0.949 48 H 0.140 0.860 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -4.090 24.375 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.286 3.714 14 O -0.475 6.475 15 C -0.123 4.123 16 C -0.112 4.112 17 C -0.097 4.097 18 C -0.231 4.231 19 C 0.070 3.930 20 O -0.239 6.239 21 C -0.020 4.020 22 C -0.110 4.110 23 C -0.200 4.200 24 C -0.206 4.206 25 C -0.182 4.182 26 C -0.093 4.093 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.038 0.962 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.158 0.842 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.999 -3.284 24.300 24.541 hybrid contribution 0.979 0.298 -1.124 1.520 sum -0.020 -2.986 23.176 23.367 Atomic orbital electron populations 1.22165 0.94639 1.03493 1.01697 1.21765 0.95292 0.81302 1.04000 1.48302 1.64074 1.15158 1.06119 1.18667 0.95213 0.91388 0.80672 1.21746 0.97895 1.31728 1.06332 0.92845 1.25885 1.02431 0.94554 0.96525 1.70066 1.37731 1.34390 1.14853 0.85364 0.79010 0.77961 0.78452 1.18964 1.19359 1.20923 1.21307 0.77163 0.86538 0.86363 1.90656 1.47882 1.20839 1.88095 1.20701 1.06046 0.98085 0.87478 1.19457 0.94511 0.99942 0.97260 1.21017 0.95967 0.97940 0.94782 1.21351 0.99913 1.00543 1.01263 1.19115 0.94352 0.90796 0.88764 1.86010 1.32487 1.58853 1.46560 1.23140 0.81035 1.00923 0.96857 1.21145 0.99702 0.94370 0.95742 1.21772 0.94057 1.03040 1.01132 1.21830 1.01472 0.95898 1.01355 1.20563 0.95188 1.02936 0.99464 1.21015 0.99896 0.93858 0.94497 0.94584 0.88623 0.91821 0.91222 0.87774 0.96182 0.98913 0.92479 0.85463 0.86026 0.85237 0.84031 0.90896 0.92324 0.89998 0.92293 0.90656 0.91567 0.93529 0.91093 0.92983 0.84205 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 10.24 71.98 0.74 -3.14 16 2 C 0.10 2.93 5.93 86.38 0.51 3.44 16 3 N -0.61 -25.66 2.46 -826.15 -2.03 -27.69 16 4 C 0.26 14.43 5.16 85.64 0.44 14.88 16 5 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 6 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 7 C 0.00 0.27 5.46 84.65 0.46 0.73 16 8 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 9 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.50 20.73 7.67 87.66 0.67 21.40 16 14 O -0.59 -31.65 15.61 -3.04 -0.05 -31.70 16 15 C -0.08 -2.32 4.38 29.10 0.13 -2.19 16 16 C -0.11 -3.30 4.37 -19.85 -0.09 -3.38 16 17 C -0.08 -2.29 9.69 22.26 0.22 -2.07 16 18 C -0.21 -5.71 9.04 22.37 0.20 -5.51 16 19 C 0.11 3.19 6.69 22.51 0.15 3.34 16 20 O -0.32 -8.14 9.67 -92.40 -0.89 -9.03 16 21 C 0.06 1.03 4.12 71.98 0.30 1.32 16 22 C -0.09 -1.34 3.16 -10.79 -0.03 -1.37 16 23 C -0.14 -1.50 9.19 71.98 0.66 -0.83 16 24 C -0.15 -2.37 9.09 71.98 0.65 -1.72 16 25 C -0.16 -4.49 9.99 22.36 0.22 -4.27 16 26 C -0.07 -2.10 9.69 22.25 0.22 -1.88 16 27 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.37 7.20 -2.39 -0.02 1.35 16 30 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 31 H 0.10 2.28 6.45 -2.39 -0.02 2.27 16 32 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 33 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.13 2.66 7.10 -2.38 -0.02 2.64 16 36 H 0.12 2.69 7.35 -2.39 -0.02 2.68 16 37 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.14 3.12 6.30 -2.91 -0.02 3.10 16 39 H 0.07 1.16 7.66 -2.39 -0.02 1.14 16 40 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 45 H 0.05 0.90 7.82 -2.39 -0.02 0.88 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 49 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -78.54 401.67 5.94 -72.61 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.90 Total: 17.88 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 5.69 Total: -12.55 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -1.74 Total: -84.80 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.94 Total: -40.73 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.54 5.94 -72.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106927931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.024 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds