Wall clock time and date at job start Tue Mar 31 2020 13:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46763 * 2 1 4 4 C 1.34771 * 119.99929 * 91.94829 * 3 2 1 5 5 O 1.21286 * 119.99995 * 180.27510 * 4 3 2 6 6 C 1.50703 * 120.00307 * 359.97438 * 4 3 2 7 7 C 1.50693 * 109.47191 * 180.02562 * 6 4 3 8 8 C 1.38305 * 119.92940 * 269.72458 * 7 6 4 9 9 C 1.38105 * 120.06716 * 179.72441 * 8 7 6 10 10 C 1.38875 * 119.93065 * 0.57679 * 9 8 7 11 11 O 1.35755 * 120.07158 * 179.68403 * 10 9 8 12 12 C 1.34825 * 117.00253 * 173.93637 * 11 10 9 13 13 H 1.08003 * 119.99858 * 5.10486 * 12 11 10 14 14 C 1.38650 * 119.99966 * 185.10337 * 12 11 10 15 15 N 1.31558 * 120.00447 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99967 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47029 * 89.99956 * 16 14 12 18 18 H 1.48501 * 109.47018 * 209.99949 * 16 14 12 19 19 H 1.48495 * 109.46995 * 330.00056 * 16 14 12 20 20 C 1.38882 * 119.86288 * 359.69735 * 10 9 8 21 21 C 1.38097 * 119.93222 * 0.02562 * 20 10 9 22 22 C 1.46505 * 119.99792 * 271.94210 * 3 2 1 23 23 H 1.08999 * 109.46892 * 235.90216 * 22 3 2 24 24 C 1.52997 * 109.47479 * 355.90128 * 22 3 2 25 25 C 1.52997 * 109.47071 * 115.90512 * 22 3 2 26 26 C 1.52997 * 109.47291 * 179.56501 * 25 22 3 27 27 C 1.53000 * 109.47080 * 299.56226 * 25 22 3 28 28 H 1.09004 * 109.46917 * 186.36726 * 1 2 3 29 29 H 1.08991 * 109.46985 * 306.36616 * 1 2 3 30 30 H 1.09001 * 109.47070 * 66.36776 * 1 2 3 31 31 H 1.09003 * 109.46662 * 240.00312 * 2 1 3 32 32 H 1.08995 * 109.47130 * 119.99824 * 2 1 3 33 33 H 1.09007 * 109.46616 * 300.00200 * 6 4 3 34 34 H 1.08997 * 109.47101 * 59.99899 * 6 4 3 35 35 H 1.07993 * 119.96331 * 359.97438 * 8 7 6 36 36 H 1.07996 * 120.03492 * 180.27085 * 9 8 7 37 37 H 0.97000 * 120.00263 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.03562 * 179.97438 * 20 10 9 39 39 H 1.07995 * 119.97284 * 179.97438 * 21 20 10 40 40 H 1.09001 * 109.46987 * 300.00372 * 24 22 3 41 41 H 1.09002 * 109.46761 * 59.99673 * 24 22 3 42 42 H 1.09000 * 109.47215 * 179.97438 * 24 22 3 43 43 H 1.09005 * 109.47160 * 59.56048 * 25 22 3 44 44 H 1.08997 * 109.47558 * 59.99067 * 26 25 22 45 45 H 1.09004 * 109.47455 * 180.02562 * 26 25 22 46 46 H 1.09011 * 109.46745 * 299.99641 * 26 25 22 47 47 H 1.09002 * 109.47031 * 64.61357 * 27 25 22 48 48 H 1.09000 * 109.47515 * 184.61906 * 27 25 22 49 49 H 1.08997 * 109.47166 * 304.62137 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2803 2.0033 1.1665 5 8 2.6797 3.1485 1.1667 6 6 2.0705 1.2783 2.4709 7 6 2.4331 2.1888 3.6156 8 6 3.7272 2.2024 4.1033 9 6 4.0640 3.0398 5.1486 10 6 3.0988 3.8602 5.7178 11 8 3.4252 4.6798 6.7496 12 6 2.4763 5.5391 7.1727 13 1 1.4832 5.4975 6.7503 14 6 2.7755 6.4761 8.1499 15 7 1.8495 7.3142 8.5631 16 14 4.4935 6.5484 8.8798 17 1 5.3315 7.4792 8.0819 18 1 4.4156 7.0308 10.2821 19 1 5.0990 5.1927 8.8556 20 6 1.7988 3.8401 5.2296 21 6 1.4696 3.0047 4.1804 22 6 2.2219 2.0862 -1.2681 23 1 3.2497 2.4447 -1.3235 24 6 1.9517 1.1306 -2.4320 25 6 1.2620 3.2748 -1.3506 26 6 1.4821 4.0173 -2.6701 27 6 -0.1809 2.7706 -1.2837 28 1 -0.3633 -1.0214 0.1140 29 1 -0.3633 0.6093 0.8275 30 1 -0.3633 0.4120 -0.9415 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.0246 0.9837 2.5586 34 1 2.7017 0.3902 2.4986 35 1 4.4760 1.5603 3.6637 36 1 5.0757 3.0531 5.5261 37 1 2.0589 7.9700 9.2465 38 1 1.0459 4.4766 5.6705 39 1 0.4588 2.9883 3.8005 40 1 2.6355 0.2838 -2.3731 41 1 0.9238 0.7720 -2.3765 42 1 2.1027 1.6552 -3.3754 43 1 1.4494 3.9517 -0.5170 44 1 1.2949 3.3405 -3.5036 45 1 0.7986 4.8644 -2.7287 46 1 2.5102 4.3766 -2.7177 47 1 -0.3614 2.3136 -0.3107 48 1 -0.8651 3.6073 -1.4247 49 1 -0.3443 2.0315 -2.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110254600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:23 Heat of formation + Delta-G solvation = -61.492430 kcal Electronic energy + Delta-G solvation = -27397.720544 eV Core-core repulsion = 23710.822834 eV Total energy + Delta-G solvation = -3686.897710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51847 -40.76601 -38.79766 -37.86207 -35.75693 -34.52196 -32.91669 -31.82556 -31.54519 -30.49866 -28.41693 -28.02635 -26.80330 -25.00997 -23.84982 -23.67167 -22.38544 -20.96482 -19.83776 -19.33092 -19.07114 -17.98625 -17.45237 -16.79759 -16.47554 -16.36810 -15.91149 -15.73295 -15.60729 -15.24786 -15.12397 -14.76444 -14.51790 -14.36045 -14.18381 -14.08950 -13.71864 -13.67474 -13.55748 -13.18771 -13.04141 -13.02073 -12.80808 -12.54321 -12.50764 -12.39405 -12.31988 -12.03370 -11.93653 -11.84166 -11.76501 -11.58256 -11.42495 -11.29451 -10.92858 -10.55061 -9.80566 -9.51565 -8.98737 -8.51703 -6.24393 0.56792 0.60903 1.28959 1.34053 1.50430 1.76542 2.11916 2.26920 2.76118 3.02568 3.16906 3.70707 3.87096 3.90069 4.00490 4.08089 4.10066 4.15986 4.23707 4.37935 4.39637 4.44583 4.50528 4.55543 4.57964 4.64239 4.71592 4.73974 4.79819 4.80399 4.95000 4.99065 5.01511 5.03439 5.08435 5.15589 5.19234 5.24228 5.30696 5.35998 5.40249 5.51389 5.53165 5.55506 5.72674 5.78223 5.81889 5.89697 6.23040 6.54999 6.82488 7.36167 7.57069 8.60309 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021483 B = 0.002733 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.046182 B =10241.855445 C =10621.775801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 N -0.604 5.604 4 C 0.508 3.492 5 O -0.577 6.577 6 C -0.079 4.079 7 C -0.135 4.135 8 C -0.060 4.060 9 C -0.192 4.192 10 C 0.118 3.882 11 O -0.245 6.245 12 C -0.401 4.401 13 H 0.078 0.922 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.264 1.264 19 H -0.261 1.261 20 C -0.237 4.237 21 C -0.065 4.065 22 C 0.151 3.849 23 H 0.050 0.950 24 C -0.157 4.157 25 C -0.116 4.116 26 C -0.141 4.141 27 C -0.143 4.143 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.285 0.715 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.043 0.957 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 -20.682 -24.669 32.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 N -0.337 5.337 4 C 0.297 3.703 5 O -0.456 6.456 6 C -0.118 4.118 7 C -0.136 4.136 8 C -0.078 4.078 9 C -0.211 4.211 10 C 0.069 3.931 11 O -0.153 6.153 12 C -0.477 4.477 13 H 0.095 0.905 14 C -0.189 4.189 15 N -0.566 5.566 16 Si 0.794 3.206 17 H -0.193 1.193 18 H -0.188 1.188 19 H -0.186 1.186 20 C -0.256 4.256 21 C -0.083 4.083 22 C 0.048 3.952 23 H 0.068 0.932 24 C -0.214 4.214 25 C -0.135 4.135 26 C -0.198 4.198 27 C -0.200 4.200 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.146 0.854 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.305 -19.916 -24.424 31.542 hybrid contribution 0.084 1.215 0.880 1.503 sum -1.221 -18.701 -23.544 30.092 Atomic orbital electron populations 1.22480 0.95509 1.03200 1.02435 1.21976 0.94966 0.80847 1.05412 1.48224 1.65485 1.15189 1.04824 1.21082 0.76531 0.86403 0.86283 1.90727 1.47035 1.19973 1.87871 1.20609 1.05614 0.97891 0.87713 1.19311 0.93742 1.01258 0.99241 1.20924 0.96138 0.96860 0.93842 1.20502 0.98500 1.01026 1.01069 1.19654 0.94146 0.91434 0.87823 1.83506 1.41053 1.46095 1.44672 1.20706 0.92346 1.12235 1.22408 0.90480 1.25306 1.03444 0.93754 0.96405 1.69733 1.35579 1.20135 1.31124 0.85195 0.78001 0.79402 0.77955 1.19283 1.18828 1.18567 1.21229 0.96438 1.05268 1.02706 1.20853 0.99666 0.93974 0.93849 1.20967 0.97622 0.92709 0.83918 0.93173 1.22244 1.03579 0.99066 0.96500 1.21439 0.96419 0.97192 0.98460 1.21819 1.01195 1.00277 0.96538 1.22033 0.94557 1.01127 1.02265 0.89665 0.93610 0.91531 0.87702 0.88621 0.86406 0.85129 0.83008 0.85316 0.90531 0.87682 0.85429 0.90637 0.90081 0.90067 0.94023 0.90135 0.93014 0.93490 0.92897 0.93760 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.55 71.98 0.62 -0.80 16 2 C 0.09 0.77 5.31 86.38 0.46 1.23 16 3 N -0.60 -10.44 2.04 -797.83 -1.63 -12.07 16 4 C 0.51 12.97 7.40 87.66 0.65 13.62 16 5 O -0.58 -21.43 14.42 -3.05 -0.04 -21.48 16 6 C -0.08 -1.68 4.35 29.10 0.13 -1.55 16 7 C -0.13 -4.34 4.38 -19.83 -0.09 -4.43 16 8 C -0.06 -2.00 9.69 22.25 0.22 -1.79 16 9 C -0.19 -7.97 9.99 22.39 0.22 -7.74 16 10 C 0.12 5.97 6.65 22.58 0.15 6.12 16 11 O -0.25 -14.17 8.59 -22.74 -0.20 -14.36 16 12 C -0.40 -24.92 9.95 67.92 0.68 -24.24 16 13 H 0.08 5.05 5.44 -2.91 -0.02 5.03 16 14 C 0.01 0.54 5.49 84.83 0.47 1.01 16 15 N -0.92 -57.35 13.96 21.61 0.30 -57.05 16 16 Si 0.97 47.36 28.62 68.60 1.96 49.32 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 20 C -0.24 -11.39 9.17 22.39 0.21 -11.19 16 21 C -0.07 -2.50 9.69 22.25 0.22 -2.29 16 22 C 0.15 2.63 2.44 44.99 0.11 2.74 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 C -0.16 -1.38 7.22 71.98 0.52 -0.86 16 25 C -0.12 -2.38 2.60 -10.80 -0.03 -2.40 16 26 C -0.14 -2.34 8.85 71.98 0.64 -1.71 16 27 C -0.14 -2.38 7.46 71.98 0.54 -1.84 16 28 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.04 0.53 7.01 -2.39 -0.02 0.51 16 30 H 0.07 0.53 4.50 -2.39 -0.01 0.52 16 31 H 0.10 0.49 5.81 -2.39 -0.01 0.47 16 32 H 0.10 0.57 6.37 -2.39 -0.02 0.56 16 33 H 0.12 1.96 7.48 -2.38 -0.02 1.94 16 34 H 0.13 1.82 7.34 -2.39 -0.02 1.80 16 35 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 36 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 37 H 0.29 16.14 8.31 -92.71 -0.77 15.37 16 38 H 0.11 5.52 5.65 -2.91 -0.02 5.50 16 39 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 40 H 0.07 0.48 7.05 -2.39 -0.02 0.46 16 41 H 0.08 0.54 4.53 -2.39 -0.01 0.53 16 42 H 0.08 0.61 6.44 -2.39 -0.02 0.59 16 43 H 0.04 1.27 6.45 -2.38 -0.02 1.26 16 44 H 0.08 0.92 6.44 -2.39 -0.02 0.90 16 45 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.05 0.96 5.43 -2.39 -0.01 0.95 16 48 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.90 5.48 -2.39 -0.01 0.89 16 Total: -1.00 -79.78 372.74 7.05 -72.73 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.96 Total: 19.04 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 5.69 Total: -36.13 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -1.32 Total: -69.12 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.24 Total: -35.84 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.96 Total: 49.32 kcal Total: -79.78 7.05 -72.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110254600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.234 kcal (2) G-P(sol) polarization free energy of solvation -79.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds