Wall clock time and date at job start Tue Mar 31 2020 14:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00183 * 2 1 4 4 C 1.53003 * 109.47020 * 210.00225 * 3 2 1 5 5 C 1.53005 * 109.46803 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47059 * 60.00351 * 5 4 3 7 7 N 1.46498 * 109.47634 * 59.99807 * 6 5 4 8 8 C 1.39664 * 120.00039 * 154.99667 * 7 6 5 9 9 C 1.38973 * 120.04703 * 359.97438 * 8 7 6 10 10 C 1.38116 * 120.03003 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 C 1.53003 * 109.47026 * 299.99512 * 6 5 4 26 26 C 1.53001 * 109.47139 * 60.00416 * 25 6 5 27 27 H 1.08999 * 109.47043 * 59.99008 * 1 2 3 28 28 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46465 * 299.99936 * 1 2 3 30 30 H 1.08995 * 109.47756 * 330.00577 * 3 2 1 31 31 H 1.09001 * 109.47059 * 60.00748 * 4 3 2 32 32 H 1.09002 * 109.47531 * 300.00153 * 4 3 2 33 33 H 1.09002 * 109.46858 * 300.00145 * 5 4 3 34 34 H 1.08997 * 109.46792 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47111 * 180.02562 * 6 5 4 36 36 H 0.97000 * 119.99514 * 334.99973 * 7 6 5 37 37 H 1.07996 * 119.98339 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.92769 * 179.97438 * 10 9 8 39 39 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 45 45 H 1.08007 * 120.06150 * 180.27477 * 24 12 11 46 46 H 1.09001 * 109.47059 * 180.02562 * 25 6 5 47 47 H 1.09004 * 109.47123 * 300.00280 * 25 6 5 48 48 H 1.08997 * 109.47128 * 179.97438 * 26 25 6 49 49 H 1.09002 * 109.46760 * 59.99710 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9816 2.6608 -0.7207 6 6 4.1892 3.1260 0.7219 7 7 5.0831 2.1929 1.4122 8 6 5.8338 2.6259 2.5074 9 6 5.7340 3.9418 2.9430 10 6 6.4769 4.3698 4.0258 11 6 7.3171 3.4901 4.6821 12 6 7.4249 2.1763 4.2482 13 8 8.2550 1.3140 4.8917 14 6 8.9911 1.8292 6.0029 15 6 9.8646 0.7209 6.5940 16 6 10.6404 1.2640 7.7663 17 1 10.5219 2.2964 8.0605 18 6 11.5006 0.4428 8.4638 19 7 12.1772 0.9167 9.4872 20 14 11.7039 -1.3434 7.9562 21 1 12.8015 -1.4536 6.9620 22 1 12.0334 -2.1629 9.1500 23 1 10.4387 -1.8337 7.3530 24 6 6.6810 1.7427 3.1620 25 6 2.8405 3.1683 1.4432 26 6 2.2179 1.7707 1.4427 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8901 30 1 1.3451 1.9994 -0.5137 31 1 3.2111 0.9314 -1.7490 32 1 4.0242 0.5692 -0.2076 33 1 3.3164 3.3551 -1.2342 34 1 4.9421 2.6308 -1.2350 35 1 4.6323 4.1219 0.7224 36 1 5.1536 1.2744 1.1084 37 1 5.0751 4.6301 2.4345 38 1 6.3983 5.3929 4.3626 39 1 7.8934 3.8267 5.5311 40 1 9.6242 2.6515 5.6695 41 1 8.2974 2.1896 6.7625 42 1 9.2318 -0.1017 6.9273 43 1 10.5583 0.3608 5.8343 44 1 12.7827 0.3390 9.9776 45 1 6.7604 0.7193 2.8258 46 1 2.9884 3.5001 2.4709 47 1 2.1754 3.8626 0.9297 48 1 1.2573 1.8007 1.9570 49 1 2.8830 1.0764 1.9562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130010687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:35 Heat of formation + Delta-G solvation = -75.311211 kcal Electronic energy + Delta-G solvation = -26316.402841 eV Core-core repulsion = 22628.905903 eV Total energy + Delta-G solvation = -3687.496938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34657 -39.46241 -37.95900 -36.68225 -33.74805 -33.23879 -31.33126 -31.07968 -30.34437 -29.11104 -27.93947 -26.73312 -25.12557 -23.18022 -22.88916 -22.30673 -21.58596 -20.40708 -19.49973 -18.02679 -17.10791 -16.86984 -16.59863 -15.87641 -15.57771 -15.53383 -15.38190 -15.32817 -14.92639 -14.47770 -14.22966 -14.01023 -13.58572 -13.36476 -13.12282 -12.98177 -12.79755 -12.60132 -12.46396 -12.37927 -12.04886 -11.92000 -11.59436 -11.53498 -11.36998 -11.14070 -10.92846 -10.79955 -10.74784 -10.64521 -10.12932 -10.06092 -9.90019 -9.79898 -9.68536 -9.30862 -8.59760 -7.97952 -7.32369 -6.10919 -4.11452 1.71051 1.86201 3.18089 3.30765 3.34348 3.37888 3.43900 3.97442 4.09733 4.25986 4.30047 4.41632 4.53770 4.67059 4.74752 4.83744 4.92358 4.96816 5.01522 5.05526 5.06977 5.18105 5.23259 5.25617 5.33334 5.40948 5.53071 5.55601 5.58721 5.61005 5.70327 5.73689 5.77937 5.91491 5.93475 5.99471 6.02298 6.11858 6.40562 6.49048 6.62290 6.75748 6.81412 6.86420 7.11400 7.27525 7.40906 7.64571 7.69305 8.03056 8.41928 8.90199 9.49573 11.01604 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002188 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.203417 B =12796.436595 C =13608.732432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.089 3.911 4 C -0.117 4.117 5 C -0.124 4.124 6 C 0.153 3.847 7 N -0.740 5.740 8 C 0.249 3.751 9 C -0.244 4.244 10 C -0.037 4.037 11 C -0.264 4.264 12 C 0.187 3.813 13 O -0.321 6.321 14 C 0.074 3.926 15 C -0.009 4.009 16 C -0.525 4.525 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.239 4.239 25 C -0.134 4.134 26 C -0.137 4.137 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.398 0.602 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.265 0.735 45 H 0.123 0.877 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.833 5.036 -23.023 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.032 3.968 4 C -0.155 4.155 5 C -0.162 4.162 6 C 0.047 3.953 7 N -0.371 5.371 8 C 0.147 3.853 9 C -0.267 4.267 10 C -0.055 4.055 11 C -0.285 4.285 12 C 0.139 3.861 13 O -0.234 6.234 14 C 0.000 4.000 15 C -0.047 4.047 16 C -0.563 4.563 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.707 3.293 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.262 4.262 25 C -0.173 4.173 26 C -0.175 4.175 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.234 0.766 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.646 4.762 -22.980 33.315 hybrid contribution 0.011 -0.817 -0.012 0.817 sum -23.635 3.945 -22.991 33.208 Atomic orbital electron populations 1.22774 0.81197 1.02728 0.99822 1.87922 1.19541 1.27966 1.95072 1.22181 0.94644 0.84312 0.95686 1.21570 0.95450 0.97512 1.00965 1.21787 1.01782 0.96584 0.96003 1.20852 0.89638 0.93960 0.90871 1.44705 1.46657 1.13242 1.32529 1.17347 0.89160 0.92292 0.86528 1.20419 1.08492 0.94733 1.03028 1.20630 0.93135 0.98445 0.93328 1.21155 1.07585 0.93857 1.05857 1.18776 0.88326 0.88636 0.90334 1.86093 1.53786 1.38408 1.45067 1.23054 0.93221 0.99131 0.84612 1.19588 0.94540 0.94375 0.96189 1.20850 1.24086 0.99275 1.12109 0.90731 1.24939 0.94938 0.98709 0.94494 1.69895 1.27400 1.36484 1.19864 0.86756 0.79261 0.85006 0.78238 1.20080 1.21210 1.18739 1.19651 1.05161 1.00452 1.00933 1.22005 0.96552 0.96713 1.02015 1.21951 1.01309 0.97499 0.96766 0.94185 0.89680 0.94073 0.92305 0.91034 0.91002 0.90454 0.90465 0.89912 0.76627 0.86592 0.86370 0.85532 0.92507 0.92486 0.95464 0.95884 0.92489 0.85924 0.90782 0.91423 0.92082 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.29 16 2 O -0.39 -3.46 10.35 -35.23 -0.36 -3.83 16 3 C 0.09 0.64 2.61 -26.73 -0.07 0.57 16 4 C -0.12 -0.77 5.40 -26.73 -0.14 -0.91 16 5 C -0.12 -0.69 5.61 -26.73 -0.15 -0.84 16 6 C 0.15 1.09 2.48 -67.93 -0.17 0.92 16 7 N -0.74 -7.00 4.40 -52.19 -0.23 -7.23 16 8 C 0.25 3.15 6.63 -83.81 -0.56 2.59 16 9 C -0.24 -2.98 8.85 -39.35 -0.35 -3.33 16 10 C -0.04 -0.49 10.03 -39.63 -0.40 -0.89 16 11 C -0.26 -4.24 9.04 -39.39 -0.36 -4.59 16 12 C 0.19 3.29 6.68 -39.24 -0.26 3.03 16 13 O -0.32 -6.52 10.13 -19.42 -0.20 -6.71 16 14 C 0.07 1.57 4.68 37.16 0.17 1.75 16 15 C -0.01 -0.23 4.41 -27.89 -0.12 -0.36 16 16 C -0.53 -15.01 9.66 -34.44 -0.33 -15.34 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 20 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 24 C -0.24 -3.64 9.83 -39.24 -0.39 -4.02 16 25 C -0.13 -0.93 5.55 -26.73 -0.15 -1.08 16 26 C -0.14 -1.07 5.38 -26.73 -0.14 -1.22 16 27 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.23 7.87 -51.92 -0.41 -0.18 16 30 H 0.06 0.36 7.79 -51.93 -0.40 -0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.54 6.50 -51.93 -0.34 0.20 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.60 6.48 -51.93 -0.34 0.26 16 36 H 0.40 3.58 6.88 -40.82 -0.28 3.30 16 37 H 0.12 1.15 6.11 -52.49 -0.32 0.83 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 39 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 40 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 41 H 0.06 1.17 7.65 -51.93 -0.40 0.78 16 42 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 43 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 46 H 0.07 0.62 7.71 -51.93 -0.40 0.22 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 49 H 0.08 0.74 7.60 -51.93 -0.39 0.35 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -31.70 382.59 -9.49 -41.18 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.15 Total: 0.82 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.42 Total: -20.44 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.54 Total: -33.98 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.56 Total: -10.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.70 -9.49 -41.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130010687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.127 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds