Wall clock time and date at job start Tue Mar 31 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00183 * 2 1 4 4 C 1.53003 * 109.47020 * 210.00225 * 3 2 1 5 5 C 1.53005 * 109.46803 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47059 * 60.00351 * 5 4 3 7 7 N 1.46498 * 109.47634 * 59.99807 * 6 5 4 8 8 C 1.39664 * 120.00039 * 154.99667 * 7 6 5 9 9 C 1.38973 * 120.04703 * 359.97438 * 8 7 6 10 10 C 1.38116 * 120.03003 * 180.02562 * 9 8 7 11 11 C 1.38216 * 120.13578 * 359.74695 * 10 9 8 12 12 C 1.38779 * 120.08401 * 0.51068 * 11 10 9 13 13 O 1.35897 * 120.00949 * 179.76812 * 12 11 10 14 14 C 1.42898 * 117.00481 * 359.71829 * 13 12 11 15 15 C 1.52997 * 109.47319 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 C 1.38609 * 119.96517 * 359.48769 * 12 11 10 25 25 C 1.53003 * 109.47026 * 299.99512 * 6 5 4 26 26 C 1.53001 * 109.47139 * 60.00416 * 25 6 5 27 27 H 1.08999 * 109.47043 * 59.99008 * 1 2 3 28 28 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46465 * 299.99936 * 1 2 3 30 30 H 1.08995 * 109.47756 * 330.00577 * 3 2 1 31 31 H 1.09001 * 109.47059 * 60.00748 * 4 3 2 32 32 H 1.09002 * 109.47531 * 300.00153 * 4 3 2 33 33 H 1.09002 * 109.46858 * 300.00145 * 5 4 3 34 34 H 1.08997 * 109.46792 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47111 * 180.02562 * 6 5 4 36 36 H 0.97000 * 119.99514 * 334.99973 * 7 6 5 37 37 H 1.07996 * 119.98339 * 0.02562 * 9 8 7 38 38 H 1.08007 * 119.92769 * 179.97438 * 10 9 8 39 39 H 1.07991 * 119.95689 * 180.26971 * 11 10 9 40 40 H 1.09002 * 109.47259 * 300.00417 * 14 13 12 41 41 H 1.09001 * 109.47074 * 60.00439 * 14 13 12 42 42 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 43 43 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 44 44 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 45 45 H 1.08007 * 120.06150 * 180.27477 * 24 12 11 46 46 H 1.09001 * 109.47059 * 180.02562 * 25 6 5 47 47 H 1.09004 * 109.47123 * 300.00280 * 25 6 5 48 48 H 1.08997 * 109.47128 * 179.97438 * 26 25 6 49 49 H 1.09002 * 109.46760 * 59.99710 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 -0.7213 5 6 3.9816 2.6608 -0.7207 6 6 4.1892 3.1260 0.7219 7 7 5.0831 2.1929 1.4122 8 6 5.8338 2.6259 2.5074 9 6 5.7340 3.9418 2.9430 10 6 6.4769 4.3698 4.0258 11 6 7.3171 3.4901 4.6821 12 6 7.4249 2.1763 4.2482 13 8 8.2550 1.3140 4.8917 14 6 8.9911 1.8292 6.0029 15 6 9.8646 0.7209 6.5940 16 6 10.6404 1.2640 7.7663 17 1 10.5219 2.2964 8.0605 18 6 11.5006 0.4428 8.4638 19 7 12.1772 0.9167 9.4872 20 14 11.7039 -1.3434 7.9562 21 1 12.8015 -1.4536 6.9620 22 1 12.0334 -2.1629 9.1500 23 1 10.4387 -1.8337 7.3530 24 6 6.6810 1.7427 3.1620 25 6 2.8405 3.1683 1.4432 26 6 2.2179 1.7707 1.4427 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8901 30 1 1.3451 1.9994 -0.5137 31 1 3.2111 0.9314 -1.7490 32 1 4.0242 0.5692 -0.2076 33 1 3.3164 3.3551 -1.2342 34 1 4.9421 2.6308 -1.2350 35 1 4.6323 4.1219 0.7224 36 1 5.1536 1.2744 1.1084 37 1 5.0751 4.6301 2.4345 38 1 6.3983 5.3929 4.3626 39 1 7.8934 3.8267 5.5311 40 1 9.6242 2.6515 5.6695 41 1 8.2974 2.1896 6.7625 42 1 9.2318 -0.1017 6.9273 43 1 10.5583 0.3608 5.8343 44 1 12.7827 0.3390 9.9776 45 1 6.7604 0.7193 2.8258 46 1 2.9884 3.5001 2.4709 47 1 2.1754 3.8626 0.9297 48 1 1.2573 1.8007 1.9570 49 1 2.8830 1.0764 1.9562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130010687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:34 Heat of formation + Delta-G solvation = -93.858975 kcal Electronic energy + Delta-G solvation = -26317.207132 eV Core-core repulsion = 22628.905903 eV Total energy + Delta-G solvation = -3688.301229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22965 -40.46615 -38.92481 -37.57868 -35.44096 -34.51510 -32.91305 -31.84445 -31.38068 -30.19761 -28.84044 -27.31774 -26.94961 -23.93614 -23.62676 -23.47753 -22.61979 -21.95658 -20.32411 -19.34214 -18.63296 -17.64851 -17.55351 -16.96245 -16.94017 -16.59275 -16.43331 -16.15273 -16.05744 -15.72307 -15.26460 -14.77847 -14.73004 -14.43976 -14.38456 -14.14614 -14.07678 -13.61218 -13.31855 -13.25170 -13.11513 -12.93515 -12.71379 -12.60245 -12.25993 -12.24062 -12.12239 -11.96379 -11.87273 -11.72907 -11.59385 -11.41646 -11.38000 -11.30758 -10.82612 -10.80077 -10.37304 -9.21196 -8.35512 -8.29566 -6.42126 0.59258 0.72001 1.35149 1.36576 1.49676 2.19381 2.32617 2.70462 2.84216 2.98432 2.99121 3.72929 3.76125 3.97375 4.02854 4.13663 4.21838 4.23366 4.23859 4.28726 4.34270 4.40601 4.46802 4.48194 4.50003 4.52822 4.55793 4.63805 4.68149 4.75040 4.83231 4.89255 4.95120 5.04601 5.10594 5.13643 5.20346 5.20513 5.29554 5.31212 5.36355 5.40328 5.49748 5.54252 5.68480 5.77250 6.15882 6.31083 6.46860 6.60650 6.63175 6.83101 7.22842 8.80160 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002188 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.203417 B =12796.436595 C =13608.732432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.089 3.911 4 C -0.117 4.117 5 C -0.115 4.115 6 C 0.148 3.852 7 N -0.731 5.731 8 C 0.258 3.742 9 C -0.235 4.235 10 C -0.034 4.034 11 C -0.286 4.286 12 C 0.153 3.847 13 O -0.338 6.338 14 C 0.089 3.911 15 C -0.006 4.006 16 C -0.536 4.536 17 H 0.042 0.958 18 C 0.013 3.987 19 N -0.941 5.941 20 Si 0.949 3.051 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.252 1.252 24 C -0.253 4.253 25 C -0.129 4.129 26 C -0.135 4.135 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.400 0.600 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.270 0.730 45 H 0.121 0.879 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.909 5.488 -25.805 36.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.155 4.155 5 C -0.153 4.153 6 C 0.043 3.957 7 N -0.361 5.361 8 C 0.153 3.847 9 C -0.257 4.257 10 C -0.052 4.052 11 C -0.306 4.306 12 C 0.107 3.893 13 O -0.252 6.252 14 C 0.015 3.985 15 C -0.044 4.044 16 C -0.574 4.574 17 H 0.060 0.940 18 C -0.185 4.185 19 N -0.581 5.581 20 Si 0.772 3.228 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.176 1.176 24 C -0.277 4.277 25 C -0.168 4.168 26 C -0.173 4.173 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.139 0.861 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -25.763 5.223 -25.804 36.835 hybrid contribution 0.493 -0.862 0.755 1.247 sum -25.270 4.361 -25.049 35.847 Atomic orbital electron populations 1.22919 0.80000 1.03445 1.00668 1.87891 1.21051 1.29168 1.95189 1.22259 0.95194 0.84087 0.95282 1.21576 0.94970 0.97956 1.00966 1.21755 1.02370 0.96269 0.94877 1.21108 0.89187 0.93804 0.91608 1.44884 1.45918 1.13909 1.31341 1.17422 0.88367 0.92176 0.86750 1.20769 1.07851 0.94815 1.02257 1.20953 0.91979 0.99240 0.93061 1.21198 1.09032 0.93931 1.06479 1.19089 0.89394 0.89209 0.91615 1.85999 1.54820 1.39430 1.44968 1.22631 0.93010 0.97617 0.85268 1.19447 0.94698 0.95226 0.94993 1.21102 1.24723 0.98133 1.13468 0.93972 1.25882 0.94509 1.03730 0.94381 1.70024 1.28370 1.38479 1.21216 0.85674 0.79847 0.78946 0.78336 1.18885 1.20307 1.17614 1.19767 1.05909 1.01066 1.00929 1.21975 0.96731 0.96495 1.01559 1.21911 1.00700 0.97563 0.97132 0.92734 0.89202 0.93749 0.90534 0.90512 0.92500 0.88106 0.90253 0.88934 0.76407 0.83457 0.83633 0.86604 0.92502 0.92602 0.95554 0.95556 0.92073 0.86067 0.92045 0.88931 0.92198 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 113.37 1.23 1.50 16 2 O -0.41 -6.89 10.35 -148.98 -1.54 -8.43 16 3 C 0.09 1.09 2.61 30.60 0.08 1.17 16 4 C -0.12 -1.27 5.40 30.60 0.17 -1.11 16 5 C -0.11 -0.89 5.61 30.59 0.17 -0.72 16 6 C 0.15 1.63 2.48 44.99 0.11 1.74 16 7 N -0.73 -12.43 4.40 -319.02 -1.40 -13.83 16 8 C 0.26 6.12 6.63 38.20 0.25 6.37 16 9 C -0.23 -5.10 8.85 22.42 0.20 -4.90 16 10 C -0.03 -0.84 10.03 22.24 0.22 -0.62 16 11 C -0.29 -9.25 9.04 22.39 0.20 -9.05 16 12 C 0.15 5.50 6.68 22.49 0.15 5.65 16 13 O -0.34 -14.15 10.13 -92.39 -0.94 -15.08 16 14 C 0.09 3.93 4.68 71.98 0.34 4.27 16 15 C -0.01 -0.31 4.41 29.85 0.13 -0.18 16 16 C -0.54 -31.59 9.66 25.60 0.25 -31.34 16 17 H 0.04 2.67 7.99 -2.91 -0.02 2.65 16 18 C 0.01 0.78 5.47 84.65 0.46 1.24 16 19 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 20 Si 0.95 45.19 27.47 68.60 1.88 47.07 16 21 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 24 C -0.25 -7.72 9.83 22.49 0.22 -7.50 16 25 C -0.13 -1.40 5.55 30.60 0.17 -1.23 16 26 C -0.14 -1.88 5.38 30.60 0.16 -1.71 16 27 H 0.05 0.41 8.08 -2.39 -0.02 0.39 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.43 7.87 -2.38 -0.02 0.41 16 30 H 0.08 0.67 7.79 -2.39 -0.02 0.65 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.79 6.50 -2.39 -0.02 0.77 16 33 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 0.92 6.48 -2.39 -0.02 0.90 16 36 H 0.40 6.73 6.88 -92.71 -0.64 6.09 16 37 H 0.15 2.27 6.11 -2.91 -0.02 2.26 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.12 3.89 6.29 -2.91 -0.02 3.87 16 40 H 0.06 2.44 7.67 -2.39 -0.02 2.43 16 41 H 0.06 2.41 7.65 -2.39 -0.02 2.39 16 42 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 43 H 0.03 1.29 7.57 -2.39 -0.02 1.28 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 46 H 0.06 0.85 7.71 -2.39 -0.02 0.83 16 47 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 48 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 49 H 0.05 0.95 7.60 -2.39 -0.02 0.93 16 Total: -1.00 -70.32 382.59 3.06 -67.27 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.24 Total: 18.11 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 4.52 Total: -36.41 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: -1.11 Total: -72.52 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -2.48 Total: -23.51 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.07 kcal Total: -70.32 3.06 -67.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130010687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.591 kcal (2) G-P(sol) polarization free energy of solvation -70.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds