Wall clock time and date at job start Tue Mar 31 2020 13:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 N 1.46495 * 109.47403 * 2 1
4 4 C 1.36903 * 120.00103 * 268.69533 * 3 2 1
5 5 H 1.08000 * 119.99984 * 191.21987 * 4 3 2
6 6 C 1.39022 * 120.00105 * 11.22366 * 4 3 2
7 7 N 1.31384 * 120.00152 * 8.90519 * 6 4 3
8 8 Si 1.86798 * 119.99970 * 188.91386 * 6 4 3
9 9 H 1.48501 * 109.47205 * 359.97438 * 8 6 4
10 10 H 1.48503 * 109.47360 * 119.99955 * 8 6 4
11 11 H 1.48509 * 109.47007 * 239.99425 * 8 6 4
12 12 C 1.34782 * 120.00203 * 88.69054 * 3 2 1
13 13 O 1.21618 * 120.00148 * 185.09710 * 12 3 2
14 14 C 1.47429 * 119.99545 * 5.09134 * 12 3 2
15 15 C 1.39772 * 120.19729 * 54.93243 * 14 12 3
16 16 C 1.37770 * 119.90170 * 180.02562 * 15 14 12
17 17 C 1.50705 * 119.84295 * 179.97438 * 16 15 14
18 18 C 1.52995 * 109.47110 * 299.99975 * 17 16 15
19 19 C 1.53001 * 109.47326 * 60.00532 * 17 16 15
20 20 C 1.38558 * 120.30638 * 359.97438 * 16 15 14
21 21 C 1.38079 * 120.40338 * 359.72791 * 20 16 15
22 22 C 1.50690 * 119.95575 * 180.27830 * 21 20 16
23 23 C 1.53002 * 109.47204 * 300.27096 * 22 21 20
24 24 C 1.52996 * 109.47874 * 60.27294 * 22 21 20
25 25 C 1.38685 * 120.08524 * 0.54916 * 21 20 16
26 26 O 1.35660 * 120.15184 * 179.72477 * 25 21 20
27 27 H 1.08999 * 109.47362 * 60.00225 * 1 2 3
28 28 H 1.08998 * 109.47091 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.46780 * 299.99552 * 1 2 3
30 30 H 1.09006 * 109.47198 * 239.99838 * 2 1 3
31 31 H 1.09003 * 109.47278 * 120.00263 * 2 1 3
32 32 H 0.96995 * 120.00375 * 180.02562 * 7 6 4
33 33 H 1.08001 * 120.04357 * 359.97438 * 15 14 12
34 34 H 1.09009 * 109.46701 * 180.02562 * 17 16 15
35 35 H 1.09000 * 109.47174 * 60.00234 * 18 17 16
36 36 H 1.09003 * 109.46463 * 180.02562 * 18 17 16
37 37 H 1.09000 * 109.46984 * 300.00035 * 18 17 16
38 38 H 1.09004 * 109.47419 * 59.99210 * 19 17 16
39 39 H 1.08998 * 109.47279 * 179.97438 * 19 17 16
40 40 H 1.09000 * 109.46730 * 299.99626 * 19 17 16
41 41 H 1.07999 * 119.79820 * 179.97438 * 20 16 15
42 42 H 1.09001 * 109.47275 * 180.27675 * 22 21 20
43 43 H 1.08995 * 109.46926 * 59.99911 * 23 22 21
44 44 H 1.09001 * 109.47391 * 180.02562 * 23 22 21
45 45 H 1.09005 * 109.46775 * 300.00505 * 23 22 21
46 46 H 1.09001 * 109.46761 * 59.99425 * 24 22 21
47 47 H 1.08999 * 109.47813 * 179.97438 * 24 22 21
48 48 H 1.09009 * 109.46709 * 300.00456 * 24 22 21
49 49 H 0.96693 * 113.99609 * 269.72764 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3811 0.0000
4 6 2.2720 2.0175 -1.1853
5 1 2.7986 2.9604 -1.1901
6 6 1.8516 1.4501 -2.3828
7 7 1.0630 0.3993 -2.3707
8 14 2.4084 2.1813 -4.0090
9 1 3.2851 3.3518 -3.7512
10 1 3.1607 1.1590 -4.7799
11 1 1.2213 2.6148 -4.7891
12 6 2.2179 2.0254 1.1669
13 8 2.5339 3.1998 1.1669
14 6 2.0529 1.3065 2.4434
15 6 2.7653 0.1282 2.6838
16 6 2.6061 -0.5390 3.8786
17 6 3.3745 -1.8097 4.1361
18 6 3.0077 -2.8510 3.0770
19 6 4.8754 -1.5206 4.0690
20 6 1.7429 -0.0473 4.8444
21 6 1.0375 1.1188 4.6227
22 6 0.1061 1.6479 5.6826
23 6 -0.9746 0.6060 5.9782
24 6 0.8980 1.9375 6.9592
25 6 1.1808 1.8008 3.4236
26 8 0.4842 2.9436 3.2021
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 -0.3633 0.5138 0.8901
30 1 1.8933 -0.5139 -0.8900
31 1 1.8933 -0.5139 0.8900
32 1 0.7700 0.0032 -3.2062
33 1 3.4389 -0.2590 1.9336
34 1 3.1218 -2.1929 5.1248
35 1 3.2600 -2.4680 2.0882
36 1 3.5631 -3.7701 3.2636
37 1 1.9384 -3.0569 3.1249
38 1 5.1367 -0.7786 4.8235
39 1 5.4311 -2.4395 4.2557
40 1 5.1277 -1.1376 3.0802
41 1 1.6240 -0.5772 5.7779
42 1 -0.3621 2.5666 5.3292
43 1 -0.5065 -0.3127 6.3316
44 1 -1.6486 0.9888 6.7445
45 1 -1.5388 0.3997 5.0686
46 1 1.6679 2.6798 6.7486
47 1 0.2244 2.3207 7.7257
48 1 1.3662 1.0187 7.3126
49 1 -0.3781 2.8044 2.7873
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000154989858.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:02:33
Heat of formation + Delta-G solvation = -76.756980 kcal
Electronic energy + Delta-G solvation = -28745.735367 eV
Core-core repulsion = 25058.175736 eV
Total energy + Delta-G solvation = -3687.559631 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.64391 -39.91738 -38.44333 -37.05119 -36.73539 -34.98522 -33.66860 -31.39804
-31.09311 -29.62810 -27.94105 -27.91392 -27.14540 -25.16020 -24.07548 -23.80813
-22.67468 -20.52914 -20.11082 -19.34309 -18.74205 -18.04384 -17.32592 -16.80007
-16.50905 -15.91549 -15.68237 -15.51534 -15.20570 -14.89477 -14.70408 -14.60470
-14.52715 -14.32269 -14.03073 -13.82522 -13.57151 -13.36542 -13.28626 -13.07940
-12.99396 -12.86459 -12.65609 -12.52905 -12.48290 -12.21104 -12.06900 -12.05423
-11.92130 -11.85957 -11.67868 -11.64709 -11.55108 -11.22749 -10.86642 -10.38949
-9.81644 -9.53434 -9.31955 -8.25520 -5.92592 0.12312 0.30490 1.34425
1.40094 1.53259 1.98196 2.24633 2.62074 3.01495 3.12033 3.29592
3.65808 3.75713 3.82694 4.14580 4.17910 4.27400 4.34580 4.38075
4.39758 4.51014 4.53828 4.62126 4.76902 4.85879 4.86664 4.87110
4.92610 4.96864 4.97704 5.03234 5.05651 5.09234 5.11507 5.14775
5.20163 5.31873 5.35829 5.37385 5.43852 5.44682 5.45507 5.52770
5.62985 5.69269 5.88516 5.91224 6.05839 6.52728 6.77489 7.14354
7.43937 8.01738 8.63251
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013733 B = 0.004650 C = 0.004019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2038.446609 B = 6019.865687 C = 6964.625218
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.118 3.882
3 N -0.439 5.439
4 C -0.339 4.339
5 H 0.069 0.931
6 C 0.000 4.000
7 N -0.873 5.873
8 Si 0.991 3.009
9 H -0.282 1.282
10 H -0.263 1.263
11 H -0.272 1.272
12 C 0.468 3.532
13 O -0.636 6.636
14 C -0.136 4.136
15 C -0.088 4.088
16 C -0.080 4.080
17 C -0.047 4.047
18 C -0.146 4.146
19 C -0.146 4.146
20 C -0.085 4.085
21 C -0.098 4.098
22 C -0.055 4.055
23 C -0.137 4.137
24 C -0.137 4.137
25 C 0.112 3.888
26 O -0.500 6.500
27 H 0.063 0.937
28 H 0.061 0.939
29 H 0.014 0.986
30 H 0.094 0.906
31 H 0.061 0.939
32 H 0.273 0.727
33 H 0.115 0.885
34 H 0.106 0.894
35 H 0.040 0.960
36 H 0.077 0.923
37 H 0.058 0.942
38 H 0.054 0.946
39 H 0.079 0.921
40 H 0.038 0.962
41 H 0.162 0.838
42 H 0.068 0.932
43 H 0.071 0.929
44 H 0.073 0.927
45 H 0.046 0.954
46 H 0.036 0.964
47 H 0.074 0.926
48 H 0.072 0.928
49 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.238 -11.092 15.963 19.567
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.004 4.004
3 N -0.156 5.156
4 C -0.467 4.467
5 H 0.087 0.913
6 C -0.201 4.201
7 N -0.513 5.513
8 Si 0.815 3.185
9 H -0.207 1.207
10 H -0.188 1.188
11 H -0.197 1.197
12 C 0.258 3.742
13 O -0.525 6.525
14 C -0.139 4.139
15 C -0.107 4.107
16 C -0.080 4.080
17 C -0.065 4.065
18 C -0.203 4.203
19 C -0.203 4.203
20 C -0.103 4.103
21 C -0.098 4.098
22 C -0.073 4.073
23 C -0.194 4.194
24 C -0.194 4.194
25 C 0.066 3.934
26 O -0.311 6.311
27 H 0.082 0.918
28 H 0.080 0.920
29 H 0.033 0.967
30 H 0.112 0.888
31 H 0.079 0.921
32 H 0.084 0.916
33 H 0.133 0.867
34 H 0.124 0.876
35 H 0.059 0.941
36 H 0.096 0.904
37 H 0.078 0.922
38 H 0.073 0.927
39 H 0.098 0.902
40 H 0.057 0.943
41 H 0.179 0.821
42 H 0.087 0.913
43 H 0.090 0.910
44 H 0.092 0.908
45 H 0.065 0.935
46 H 0.055 0.945
47 H 0.093 0.907
48 H 0.091 0.909
49 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -1.704 -10.417 16.005 19.172
hybrid contribution -0.142 0.897 -1.792 2.009
sum -1.846 -9.520 14.213 17.206
Atomic orbital electron populations
1.21933 0.95948 1.00691 0.99759 1.21819 0.95292 0.81939 1.01400
1.43964 1.54817 1.12708 1.04093 1.19725 1.36001 1.06802 0.84140
0.91346 1.25962 0.95337 0.97036 1.01805 1.70185 1.31134 1.21843
1.28103 0.84912 0.78208 0.78143 0.77242 1.20679 1.18822 1.19736
1.18455 0.84849 0.86383 0.84533 1.90565 1.55829 1.18311 1.87831
1.20381 1.01887 0.97035 0.94622 1.20905 0.98867 0.92845 0.98104
1.20030 0.97821 0.97569 0.92597 1.20166 0.94253 0.90788 1.01316
1.21882 1.02033 0.98572 0.97822 1.21887 0.94788 1.02357 1.01314
1.21132 0.94882 0.94642 0.99676 1.20268 1.00049 0.95235 0.94260
1.20057 0.94757 0.99259 0.93241 1.21828 0.97460 0.98464 1.01626
1.21811 0.99778 1.02036 0.95821 1.18521 0.94936 0.86869 0.93032
1.84744 1.34907 1.28484 1.82917 0.91827 0.91979 0.96658 0.88780
0.92060 0.91592 0.86685 0.87613 0.94131 0.90395 0.92248 0.92705
0.90233 0.94322 0.82066 0.91321 0.91037 0.90828 0.93499 0.94492
0.90691 0.90939 0.75089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.43 9.60 71.98 0.69 -4.74 16
2 C 0.12 5.46 5.13 86.38 0.44 5.90 16
3 N -0.44 -23.95 2.62 -639.26 -1.68 -25.63 16
4 C -0.34 -19.89 9.48 84.09 0.80 -19.10 16
5 H 0.07 4.39 7.26 -2.91 -0.02 4.37 16
6 C 0.00 0.01 5.25 84.95 0.45 0.46 16
7 N -0.87 -44.04 7.61 21.68 0.17 -43.87 16
8 Si 0.99 42.70 29.56 68.60 2.03 44.73 16
9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
10 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
11 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16
12 C 0.47 25.79 6.73 86.66 0.58 26.37 16
13 O -0.64 -41.05 16.42 -1.90 -0.03 -41.08 16
14 C -0.14 -5.94 4.96 -20.01 -0.10 -6.04 16
15 C -0.09 -3.18 6.19 22.53 0.14 -3.04 16
16 C -0.08 -2.15 4.78 -19.90 -0.10 -2.25 16
17 C -0.05 -0.92 3.09 -11.54 -0.04 -0.96 16
18 C -0.15 -2.83 9.00 71.98 0.65 -2.18 16
19 C -0.15 -2.91 9.00 71.98 0.65 -2.27 16
20 C -0.09 -2.07 8.32 22.31 0.19 -1.88 16
21 C -0.10 -2.82 4.79 -19.80 -0.09 -2.91 16
22 C -0.05 -1.23 3.05 -11.54 -0.04 -1.27 16
23 C -0.14 -2.31 9.00 71.98 0.65 -1.66 16
24 C -0.14 -2.60 9.01 71.98 0.65 -1.95 16
25 C 0.11 4.35 6.68 22.85 0.15 4.51 16
26 O -0.50 -20.27 11.49 -87.57 -1.01 -21.28 16
27 H 0.06 3.13 6.14 -2.39 -0.01 3.11 16
28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16
29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
30 H 0.09 4.66 5.83 -2.38 -0.01 4.65 16
31 H 0.06 2.54 4.42 -2.39 -0.01 2.52 16
32 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16
33 H 0.12 4.30 6.43 -2.91 -0.02 4.29 16
34 H 0.11 1.49 7.87 -2.38 -0.02 1.47 16
35 H 0.04 0.95 7.37 -2.39 -0.02 0.93 16
36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16
39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
40 H 0.04 0.92 7.37 -2.39 -0.02 0.91 16
41 H 0.16 2.61 6.95 -2.91 -0.02 2.59 16
42 H 0.07 1.77 6.99 -2.39 -0.02 1.75 16
43 H 0.07 0.99 7.36 -2.39 -0.02 0.98 16
44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
45 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16
46 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16
47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
48 H 0.07 1.11 7.39 -2.38 -0.02 1.09 16
49 H 0.39 13.06 9.06 -74.06 -0.67 12.39 16
Total: -1.00 -73.74 383.30 5.43 -68.31
By element:
Atomic # 1 Polarization: 31.54 SS G_CDS: 0.28 Total: 31.82 kcal
Atomic # 6 Polarization: -18.68 SS G_CDS: 5.67 Total: -13.01 kcal
Atomic # 7 Polarization: -67.99 SS G_CDS: -1.51 Total: -69.50 kcal
Atomic # 8 Polarization: -61.32 SS G_CDS: -1.04 Total: -62.35 kcal
Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal
Total: -73.74 5.43 -68.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000154989858.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.445 kcal
(2) G-P(sol) polarization free energy of solvation -73.744 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds