Wall clock time and date at job start Tue Mar 31 2020 13:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47184 * 2 1 4 4 C 1.37096 * 120.00128 * 264.76801 * 3 2 1 5 5 H 1.07999 * 119.99610 * 138.84769 * 4 3 2 6 6 C 1.38945 * 119.99922 * 318.85169 * 4 3 2 7 7 N 1.31414 * 120.00216 * 341.83417 * 6 4 3 8 8 Si 1.86802 * 120.00008 * 161.83211 * 6 4 3 9 9 H 1.48501 * 109.46828 * 59.99841 * 8 6 4 10 10 H 1.48491 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47225 * 300.00372 * 8 6 4 12 12 C 1.34775 * 119.99505 * 84.76817 * 3 2 1 13 13 O 1.21300 * 119.99554 * 179.97438 * 12 3 2 14 14 C 1.50699 * 120.00435 * 0.02562 * 12 3 2 15 15 C 1.53001 * 109.47136 * 179.97438 * 14 12 3 16 16 O 1.42905 * 109.46809 * 179.97438 * 15 14 12 17 17 C 1.35904 * 116.99693 * 180.02562 * 16 15 14 18 18 C 1.38758 * 120.05373 * 359.72025 * 17 16 15 19 19 C 1.38124 * 119.93888 * 180.30079 * 18 17 16 20 20 C 1.50699 * 119.97046 * 179.97438 * 19 18 17 21 21 C 1.38280 * 120.05981 * 359.95884 * 19 18 17 22 22 C 1.38246 * 120.11289 * 0.04256 * 21 19 18 23 23 C 1.38168 * 120.05340 * 359.97438 * 22 21 19 24 24 C 1.50703 * 120.02995 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47104 * 300.02808 * 24 23 22 26 26 C 1.53002 * 109.46541 * 60.02536 * 24 23 22 27 27 H 1.08999 * 109.47237 * 59.99992 * 1 2 3 28 28 H 1.09003 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47428 * 300.00010 * 1 2 3 30 30 H 1.08996 * 109.47106 * 240.00109 * 2 1 3 31 31 H 1.09000 * 109.46932 * 120.00457 * 2 1 3 32 32 H 0.97004 * 119.99915 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47374 * 59.99518 * 14 12 3 34 34 H 1.08999 * 109.46967 * 299.99631 * 14 12 3 35 35 H 1.09004 * 109.46957 * 60.00340 * 15 14 12 36 36 H 1.08992 * 109.47423 * 299.99955 * 15 14 12 37 37 H 1.08000 * 120.02686 * 0.25689 * 18 17 16 38 38 H 1.09004 * 109.46975 * 269.99988 * 20 19 18 39 39 H 1.09006 * 109.47063 * 29.99852 * 20 19 18 40 40 H 1.08999 * 109.47243 * 149.99898 * 20 19 18 41 41 H 1.08008 * 119.94790 * 180.02562 * 21 19 18 42 42 H 1.08003 * 119.97763 * 179.97438 * 22 21 19 43 43 H 1.08995 * 109.47465 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47429 * 59.99737 * 25 24 23 45 45 H 1.08996 * 109.46973 * 179.97438 * 25 24 23 46 46 H 1.08996 * 109.46986 * 300.00144 * 25 24 23 47 47 H 1.09006 * 109.46555 * 180.02562 * 26 24 23 48 48 H 1.08998 * 109.47582 * 299.99462 * 26 24 23 49 49 H 1.08997 * 109.47322 * 60.00208 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0743 3.0218 -1.3534 6 6 3.0372 1.2842 -2.1604 7 7 3.6791 0.1818 -1.8450 8 14 3.0501 1.9006 -3.9238 9 1 3.6537 3.2566 -3.9697 10 1 3.8492 0.9747 -4.7659 11 1 1.6579 1.9609 -4.4373 12 6 2.1426 2.0520 1.1624 13 8 2.5474 3.1954 1.1624 14 6 1.7798 1.3810 2.4621 15 6 2.0117 2.3536 3.6202 16 8 1.6670 1.7175 4.8526 17 6 1.8157 2.4500 5.9877 18 6 2.2892 3.7524 5.9172 19 6 2.4452 4.4926 7.0728 20 6 2.9600 5.9069 6.9972 21 6 2.1292 3.9372 8.2991 22 6 1.6573 2.6398 8.3720 23 6 1.4998 1.8950 7.2190 24 6 0.9858 0.4806 7.2991 25 6 1.9359 -0.3595 8.1550 26 6 -0.4070 0.4793 7.9322 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.1593 -0.3121 -2.5280 33 1 2.4018 0.4967 2.6006 34 1 0.7304 1.0871 2.4386 35 1 1.3898 3.2381 3.4820 36 1 3.0611 2.6472 3.6435 37 1 2.5361 4.1866 4.9597 38 1 4.0475 5.9022 7.0703 39 1 2.6616 6.3519 6.0479 40 1 2.5431 6.4897 7.8186 41 1 2.2516 4.5178 9.2016 42 1 1.4116 2.2080 9.3310 43 1 0.9296 0.0570 6.2964 44 1 1.9922 0.0640 9.1578 45 1 1.5639 -1.3824 8.2133 46 1 2.9282 -0.3585 7.7040 47 1 -0.7786 -0.5438 7.9906 48 1 -0.3508 0.9027 8.9350 49 1 -1.0839 1.0778 7.3225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161028605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:00 Heat of formation + Delta-G solvation = -71.329569 kcal Electronic energy + Delta-G solvation = -26999.881679 eV Core-core repulsion = 23312.557398 eV Total energy + Delta-G solvation = -3687.324281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35955 -38.71927 -37.55334 -35.79431 -35.04002 -32.32400 -31.64641 -31.07155 -29.61803 -29.43899 -27.18582 -26.87354 -25.46297 -23.78007 -22.51888 -22.10236 -21.56937 -19.99721 -18.70652 -17.58130 -16.76389 -16.38008 -16.00156 -15.66173 -15.48657 -14.93675 -14.35005 -14.21119 -14.05144 -13.95492 -13.79249 -13.59789 -13.35549 -13.30348 -12.94590 -12.72775 -12.39493 -12.25745 -12.22487 -12.02116 -11.81011 -11.67564 -11.55624 -11.30966 -11.27039 -11.07058 -11.03730 -10.93622 -10.63763 -10.52765 -10.43796 -10.38421 -10.27493 -10.08274 -8.94153 -8.67597 -8.48926 -7.98228 -7.46467 -6.34860 -4.03985 1.32416 1.50280 3.18234 3.23233 3.24541 3.33125 3.74047 3.86349 4.16259 4.60750 4.73906 4.88709 4.89932 4.99797 5.01668 5.16982 5.18087 5.30054 5.31239 5.38346 5.42499 5.53481 5.54842 5.57080 5.68824 5.70301 5.75302 5.78405 5.79409 5.82286 5.95512 5.97677 6.09646 6.12049 6.20231 6.20719 6.21442 6.26092 6.36791 6.42592 6.52395 6.58335 6.62023 6.85563 6.88011 7.19740 7.55721 7.58499 8.25968 8.47076 9.14932 9.35522 9.96358 10.70300 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017299 B = 0.002871 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.207619 B = 9750.402933 C =10884.148568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.437 5.437 4 C -0.312 4.312 5 H 0.088 0.912 6 C 0.040 3.960 7 N -0.871 5.871 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.465 3.535 13 O -0.584 6.584 14 C -0.133 4.133 15 C 0.080 3.920 16 O -0.316 6.316 17 C 0.145 3.855 18 C -0.206 4.206 19 C -0.052 4.052 20 C -0.116 4.116 21 C -0.164 4.164 22 C -0.078 4.078 23 C -0.118 4.118 24 C -0.052 4.052 25 C -0.141 4.141 26 C -0.141 4.141 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.268 0.732 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 0.021 18.536 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.156 5.156 4 C -0.440 4.440 5 H 0.106 0.894 6 C -0.165 4.165 7 N -0.508 5.508 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.253 3.747 13 O -0.468 6.468 14 C -0.174 4.174 15 C 0.005 3.995 16 O -0.230 6.230 17 C 0.099 3.901 18 C -0.225 4.225 19 C -0.052 4.052 20 C -0.172 4.172 21 C -0.182 4.182 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.070 4.070 25 C -0.198 4.198 26 C -0.198 4.198 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.139 0.222 18.364 19.071 hybrid contribution 0.176 0.293 -1.006 1.063 sum -4.964 0.515 17.358 18.061 Atomic orbital electron populations 1.22223 0.98122 1.00475 1.01560 1.21491 0.91692 0.85486 1.03593 1.43407 1.55732 1.11779 1.04663 1.19342 1.35136 0.98623 0.90868 0.89422 1.25432 0.93941 0.96518 1.00601 1.69920 1.29262 1.17475 1.34153 0.86121 0.78401 0.78872 0.82039 1.19703 1.20946 1.19839 1.20040 0.82212 0.87874 0.84562 1.90528 1.50573 1.18788 1.86941 1.21521 1.03655 0.99522 0.92676 1.22514 1.01064 0.95784 0.80169 1.85977 1.81984 1.41488 1.13506 1.18812 0.94849 0.90018 0.86450 1.21268 1.07083 0.94490 0.99675 1.19682 0.96944 0.95985 0.92597 1.20815 1.01198 0.92422 1.02806 1.20835 1.04447 0.95959 0.96939 1.20721 0.98004 0.93714 0.97137 1.19168 1.05373 0.97052 0.90278 1.19949 0.94684 0.91375 1.01031 1.21838 0.99431 0.99174 0.99379 1.21839 0.96031 1.01506 1.00419 0.92404 0.92993 0.93800 0.87818 0.93176 0.92151 0.89124 0.89399 0.91477 0.91328 0.85004 0.91051 0.91359 0.91579 0.86351 0.85845 0.89479 0.92856 0.92567 0.92586 0.92577 0.92850 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.15 37.16 0.38 -2.55 16 2 C 0.10 2.17 5.41 -4.04 -0.02 2.14 16 3 N -0.44 -10.95 2.50 -114.81 -0.29 -11.23 16 4 C -0.31 -8.59 8.84 -14.94 -0.13 -8.72 16 5 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 6 C 0.04 1.05 4.95 -17.47 -0.09 0.96 16 7 N -0.87 -23.39 11.61 55.50 0.64 -22.75 16 8 Si 0.92 20.49 29.59 -169.99 -5.03 15.46 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 12 C 0.47 11.23 7.59 -10.99 -0.08 11.15 16 13 O -0.58 -16.00 15.89 5.54 0.09 -15.92 16 14 C -0.13 -2.49 4.68 -27.88 -0.13 -2.62 16 15 C 0.08 1.39 4.03 37.16 0.15 1.54 16 16 O -0.32 -5.11 8.90 -19.44 -0.17 -5.28 16 17 C 0.14 2.17 6.66 -39.22 -0.26 1.91 16 18 C -0.21 -2.97 8.69 -39.43 -0.34 -3.32 16 19 C -0.05 -0.64 5.88 -104.65 -0.62 -1.26 16 20 C -0.12 -1.14 10.01 36.01 0.36 -0.78 16 21 C -0.16 -1.82 9.70 -39.56 -0.38 -2.21 16 22 C -0.08 -0.87 8.71 -39.60 -0.35 -1.22 16 23 C -0.12 -1.52 4.79 -104.47 -0.50 -2.02 16 24 C -0.05 -0.59 3.06 -91.77 -0.28 -0.87 16 25 C -0.14 -1.37 9.01 37.16 0.33 -1.04 16 26 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.73 6.60 -51.93 -0.34 0.38 16 30 H 0.10 2.44 5.76 -51.93 -0.30 2.14 16 31 H 0.05 0.98 6.66 -51.93 -0.35 0.63 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.09 1.62 7.41 -51.93 -0.38 1.23 16 34 H 0.09 1.48 6.54 -51.93 -0.34 1.14 16 35 H 0.07 1.19 7.63 -51.93 -0.40 0.79 16 36 H 0.07 1.25 7.61 -51.93 -0.40 0.85 16 37 H 0.13 1.95 6.30 -52.49 -0.33 1.62 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.12 1.09 7.10 -52.48 -0.37 0.72 16 43 H 0.09 1.12 6.99 -51.93 -0.36 0.76 16 44 H 0.05 0.46 7.39 -51.93 -0.38 0.07 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.05 0.45 7.39 -51.93 -0.38 0.07 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -30.55 391.71 -8.59 -39.13 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.10 Total: 4.58 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.63 Total: -9.90 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.36 Total: -33.98 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.09 Total: -21.20 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.55 -8.59 -39.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161028605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.195 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds