Wall clock time and date at job start Tue Mar 31 2020 13:42:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.45199 * 109.46915 * 2 1
4 4 C 1.34235 * 116.99672 * 179.97438 * 3 2 1
5 5 O 1.20818 * 120.00086 * 359.97438 * 4 3 2
6 6 C 1.50700 * 119.99882 * 180.02562 * 4 3 2
7 7 H 1.09006 * 109.47046 * 309.10621 * 6 4 3
8 8 C 1.52997 * 109.47353 * 69.10680 * 6 4 3
9 9 C 1.50700 * 109.47177 * 184.99979 * 8 6 4
10 10 C 1.38234 * 120.00075 * 269.72537 * 9 8 6
11 11 C 1.38235 * 120.00015 * 179.76369 * 10 9 8
12 12 C 1.38241 * 119.99658 * 0.50975 * 11 10 9
13 13 C 1.38232 * 120.00180 * 359.74503 * 12 11 10
14 14 C 1.38235 * 120.00164 * 0.02562 * 13 12 11
15 15 N 1.46898 * 109.47068 * 189.10711 * 6 4 3
16 16 C 1.46895 * 111.00029 * 298.24996 * 15 6 4
17 17 C 1.46910 * 111.00081 * 62.20577 * 15 6 4
18 18 C 1.53000 * 109.47041 * 169.99742 * 17 15 6
19 19 C 1.53003 * 109.46810 * 179.97438 * 18 17 15
20 20 C 1.50698 * 109.46933 * 180.02562 * 19 18 17
21 21 H 1.07998 * 120.00342 * 0.02562 * 20 19 18
22 22 C 1.37876 * 119.99887 * 180.02562 * 20 19 18
23 23 N 1.31517 * 120.00100 * 179.97438 * 22 20 19
24 24 Si 1.86794 * 120.00155 * 359.97438 * 22 20 19
25 25 H 1.48504 * 109.47193 * 89.99806 * 24 22 20
26 26 H 1.48496 * 109.47222 * 210.00125 * 24 22 20
27 27 H 1.48505 * 109.47245 * 330.00589 * 24 22 20
28 28 H 1.08999 * 109.47463 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47242 * 300.00395 * 1 2 3
30 30 H 1.09003 * 109.47415 * 59.99994 * 1 2 3
31 31 H 1.09001 * 109.47242 * 239.99605 * 2 1 3
32 32 H 1.09003 * 109.46902 * 119.99435 * 2 1 3
33 33 H 1.09000 * 109.47222 * 64.99786 * 8 6 4
34 34 H 1.08999 * 109.47025 * 304.99754 * 8 6 4
35 35 H 1.07992 * 119.99949 * 0.02562 * 10 9 8
36 36 H 1.07996 * 120.00281 * 180.23378 * 11 10 9
37 37 H 1.08001 * 119.99759 * 179.72060 * 12 11 10
38 38 H 1.07998 * 120.00069 * 179.97438 * 13 12 11
39 39 H 1.07993 * 120.00159 * 179.97438 * 14 13 12
40 40 H 1.09000 * 109.46951 * 68.34446 * 16 15 6
41 41 H 1.09003 * 109.47024 * 188.33939 * 16 15 6
42 42 H 1.08997 * 109.47544 * 308.34256 * 16 15 6
43 43 H 1.09003 * 109.46597 * 290.00163 * 17 15 6
44 44 H 1.08997 * 109.46739 * 50.00035 * 17 15 6
45 45 H 1.08996 * 109.47483 * 300.00323 * 18 17 15
46 46 H 1.09005 * 109.46538 * 60.00436 * 18 17 15
47 47 H 1.08996 * 109.47724 * 300.00619 * 19 18 17
48 48 H 1.09006 * 109.46575 * 60.00602 * 19 18 17
49 49 H 0.96993 * 120.00047 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5867 0.0015
6 6 3.9207 2.9374 0.0012
7 1 3.4608 3.5212 -0.7963
8 6 3.6398 3.6049 1.3489
9 6 4.1064 5.0373 1.3069
10 6 5.3971 5.3551 1.6862
11 6 5.8266 6.6684 1.6431
12 6 4.9621 7.6651 1.2307
13 6 3.6697 7.3479 0.8564
14 6 3.2417 6.0341 0.8950
15 7 5.3716 2.8672 -0.2176
16 6 6.0313 2.1215 0.8625
17 6 5.6787 2.2782 -1.5279
18 6 7.1696 2.4478 -1.8265
19 6 7.4895 1.8338 -3.1910
20 6 8.9581 2.0002 -3.4848
21 1 9.5993 2.4941 -2.7698
22 6 9.4832 1.5220 -4.6666
23 7 10.7648 1.6677 -4.9233
24 14 8.3744 0.6671 -5.9030
25 1 7.8175 1.6707 -6.8454
26 1 9.1608 -0.3398 -6.6599
27 1 7.2631 -0.0092 -5.1867
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3634 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 4.1727 3.0721 2.1364
34 1 2.5692 3.5774 1.5518
35 1 6.0712 4.5770 2.0122
36 1 6.8362 6.9162 1.9358
37 1 5.2962 8.6917 1.2013
38 1 2.9942 8.1267 0.5347
39 1 2.2319 5.7864 0.6030
40 1 5.7454 1.0712 0.8060
41 1 7.1127 2.2098 0.7571
42 1 5.7256 2.5301 1.8256
43 1 5.4286 1.2173 -1.5169
44 1 5.0943 2.7813 -2.2983
45 1 7.4197 3.5086 -1.8374
46 1 7.7539 1.9446 -1.0561
47 1 7.2395 0.7729 -3.1797
48 1 6.9051 2.3366 -3.9616
49 1 11.1343 1.3309 -5.7545
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000171920388.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:38
Heat of formation + Delta-G solvation = -61.928604 kcal
Electronic energy + Delta-G solvation = -27336.760435 eV
Core-core repulsion = 23649.843810 eV
Total energy + Delta-G solvation = -3686.916624 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.07626 -39.31987 -37.95340 -36.18584 -34.35838 -32.85958 -31.95967 -31.29813
-30.86624 -29.21591 -27.48413 -25.88050 -24.54410 -23.04123 -22.54930 -21.84532
-21.28842 -20.12645 -19.88897 -17.92175 -17.08650 -16.80182 -16.52360 -16.44319
-15.89732 -15.19488 -14.85738 -14.70883 -14.45919 -14.23930 -14.01008 -13.70129
-13.43413 -13.15120 -13.03903 -12.83252 -12.69093 -12.46125 -12.34262 -12.06905
-11.91259 -11.80844 -11.61169 -11.43420 -11.33911 -11.12187 -10.94109 -10.85231
-10.73440 -10.64420 -10.55267 -9.86287 -9.60446 -9.55416 -9.11741 -8.87945
-8.68851 -8.48275 -8.14578 -5.99004 -3.96101 1.33091 1.44897 2.07481
2.52788 3.34198 3.41153 3.46166 3.79206 3.87420 4.45814 4.50198
4.65322 4.70661 4.74649 4.77234 4.87452 5.00061 5.01294 5.02867
5.13785 5.27625 5.35039 5.36855 5.41184 5.48469 5.51376 5.62878
5.65400 5.67362 5.71056 5.88307 5.95338 6.00045 6.06655 6.17170
6.25357 6.43551 6.47578 6.54563 6.56969 6.62065 6.64380 6.94361
7.02193 7.09244 7.18180 7.40635 7.53447 7.66786 7.86110 8.60798
9.06794 9.64095 11.14677
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.008608 B = 0.003983 C = 0.002952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3252.173467 B = 7028.083651 C = 9482.017880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.059 3.941
3 O -0.362 6.362
4 C 0.431 3.569
5 O -0.496 6.496
6 C 0.099 3.901
7 H 0.118 0.882
8 C -0.071 4.071
9 C -0.069 4.069
10 C -0.089 4.089
11 C -0.119 4.119
12 C -0.123 4.123
13 C -0.124 4.124
14 C -0.118 4.118
15 N -0.498 5.498
16 C -0.006 4.006
17 C 0.039 3.961
18 C -0.092 4.092
19 C -0.013 4.013
20 C -0.516 4.516
21 H 0.072 0.928
22 C 0.065 3.935
23 N -0.905 5.905
24 Si 0.879 3.121
25 H -0.277 1.277
26 H -0.288 1.288
27 H -0.266 1.266
28 H 0.077 0.923
29 H 0.065 0.935
30 H 0.066 0.934
31 H 0.069 0.931
32 H 0.067 0.933
33 H 0.082 0.918
34 H 0.086 0.914
35 H 0.123 0.877
36 H 0.120 0.880
37 H 0.117 0.883
38 H 0.117 0.883
39 H 0.119 0.881
40 H 0.062 0.938
41 H 0.077 0.923
42 H 0.061 0.939
43 H 0.050 0.950
44 H 0.065 0.935
45 H 0.060 0.940
46 H 0.054 0.946
47 H 0.013 0.987
48 H 0.010 0.990
49 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.942 5.381 15.896 27.624
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.016 4.016
3 O -0.278 6.278
4 C 0.272 3.728
5 O -0.383 6.383
6 C -0.013 4.013
7 H 0.136 0.864
8 C -0.108 4.108
9 C -0.069 4.069
10 C -0.107 4.107
11 C -0.137 4.137
12 C -0.141 4.141
13 C -0.142 4.142
14 C -0.136 4.136
15 N -0.221 5.221
16 C -0.154 4.154
17 C -0.087 4.087
18 C -0.130 4.130
19 C -0.051 4.051
20 C -0.554 4.554
21 H 0.090 0.910
22 C -0.135 4.135
23 N -0.545 5.545
24 Si 0.707 3.293
25 H -0.203 1.203
26 H -0.214 1.214
27 H -0.191 1.191
28 H 0.096 0.904
29 H 0.084 0.916
30 H 0.085 0.915
31 H 0.087 0.913
32 H 0.086 0.914
33 H 0.100 0.900
34 H 0.104 0.896
35 H 0.140 0.860
36 H 0.138 0.862
37 H 0.135 0.865
38 H 0.135 0.865
39 H 0.137 0.863
40 H 0.080 0.920
41 H 0.096 0.904
42 H 0.080 0.920
43 H 0.068 0.932
44 H 0.084 0.916
45 H 0.079 0.921
46 H 0.073 0.927
47 H 0.031 0.969
48 H 0.028 0.972
49 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -21.415 5.496 15.765 27.154
hybrid contribution -0.671 -1.488 -0.962 1.894
sum -22.086 4.008 14.804 26.888
Atomic orbital electron populations
1.21795 0.92718 1.02878 1.03438 1.22997 0.95300 0.80719 1.02539
1.86563 1.25301 1.32171 1.83797 1.25785 0.80566 0.94245 0.72193
1.90626 1.59542 1.43450 1.44694 1.21862 0.90332 0.88326 1.00789
0.86398 1.20649 1.02145 0.92951 0.95086 1.19454 0.94309 0.93736
0.99405 1.21041 0.95005 0.96241 0.98381 1.21153 0.99518 0.93110
0.99953 1.21123 0.94072 0.99220 0.99731 1.21050 0.96234 0.96296
1.00628 1.20996 0.99449 0.92791 1.00349 1.62649 1.03183 1.52071
1.04163 1.22885 1.00592 0.98529 0.93354 1.22568 0.99859 0.98115
0.88198 1.21410 0.91278 1.01337 0.98980 1.19546 0.97456 0.95575
0.92501 1.21141 0.92239 1.37704 1.04279 0.91016 1.25026 0.94861
0.95655 0.97996 1.69918 1.12063 1.47293 1.25211 0.86786 0.81126
0.79850 0.81576 1.20316 1.21439 1.19112 0.90386 0.91554 0.91465
0.91297 0.91419 0.89950 0.89561 0.85954 0.86224 0.86498 0.86455
0.86339 0.91955 0.90417 0.92014 0.93192 0.91631 0.92095 0.92720
0.96873 0.97212 0.92830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16
2 C 0.06 0.57 6.19 37.16 0.23 0.80 16
3 O -0.36 -4.16 10.22 -39.27 -0.40 -4.56 16
4 C 0.43 5.67 6.59 36.01 0.24 5.90 16
5 O -0.50 -7.91 11.50 -18.74 -0.22 -8.13 16
6 C 0.10 1.18 2.28 -68.87 -0.16 1.03 16
7 H 0.12 1.36 8.09 -51.93 -0.42 0.94 16
8 C -0.07 -0.69 4.57 -27.88 -0.13 -0.82 16
9 C -0.07 -0.73 4.95 -104.62 -0.52 -1.25 16
10 C -0.09 -1.00 9.31 -39.58 -0.37 -1.36 16
11 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16
12 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16
13 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16
14 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16
15 N -0.50 -7.18 4.17 -236.28 -0.98 -8.16 16
16 C -0.01 -0.09 8.10 60.06 0.49 0.40 16
17 C 0.04 0.69 4.46 -3.82 -0.02 0.67 16
18 C -0.09 -1.92 5.07 -26.73 -0.14 -2.05 16
19 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16
20 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16
21 H 0.07 2.26 7.99 -52.49 -0.42 1.85 16
22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
23 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16
24 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16
25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
27 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16
28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16
32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16
33 H 0.08 0.79 5.88 -51.93 -0.31 0.48 16
34 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16
35 H 0.12 1.33 6.54 -52.49 -0.34 0.99 16
36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16
37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16
38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16
39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16
40 H 0.06 0.97 5.42 -51.93 -0.28 0.69 16
41 H 0.08 1.14 6.68 -51.93 -0.35 0.79 16
42 H 0.06 0.70 4.72 -51.93 -0.25 0.46 16
43 H 0.05 0.95 6.11 -51.93 -0.32 0.63 16
44 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16
45 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
46 H 0.05 1.15 6.65 -51.93 -0.35 0.80 16
47 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16
48 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16
49 H 0.26 7.74 8.31 -40.82 -0.34 7.41 16
LS Contribution 387.26 15.07 5.84 5.84
Total: -1.00 -33.41 387.26 -9.79 -43.20
By element:
Atomic # 1 Polarization: 7.82 SS G_CDS: -8.02 Total: -0.21 kcal
Atomic # 6 Polarization: -15.81 SS G_CDS: -2.11 Total: -17.92 kcal
Atomic # 7 Polarization: -35.82 SS G_CDS: -0.21 Total: -36.03 kcal
Atomic # 8 Polarization: -12.07 SS G_CDS: -0.62 Total: -12.69 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal
Total LS contribution 5.84 Total: 5.84 kcal
Total: -33.41 -9.79 -43.20 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171920388.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.726 kcal
(2) G-P(sol) polarization free energy of solvation -33.412 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds