Wall clock time and date at job start Tue Mar 31 2020 13:42:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.45199 * 109.46915 * 2 1
4 4 C 1.34235 * 116.99672 * 179.97438 * 3 2 1
5 5 O 1.20818 * 120.00086 * 359.97438 * 4 3 2
6 6 C 1.50700 * 119.99882 * 180.02562 * 4 3 2
7 7 H 1.09006 * 109.47046 * 309.10621 * 6 4 3
8 8 C 1.52997 * 109.47353 * 69.10680 * 6 4 3
9 9 C 1.50700 * 109.47177 * 184.99979 * 8 6 4
10 10 C 1.38234 * 120.00075 * 269.72537 * 9 8 6
11 11 C 1.38235 * 120.00015 * 179.76369 * 10 9 8
12 12 C 1.38241 * 119.99658 * 0.50975 * 11 10 9
13 13 C 1.38232 * 120.00180 * 359.74503 * 12 11 10
14 14 C 1.38235 * 120.00164 * 0.02562 * 13 12 11
15 15 N 1.46898 * 109.47068 * 189.10711 * 6 4 3
16 16 C 1.46895 * 111.00029 * 298.24996 * 15 6 4
17 17 C 1.46910 * 111.00081 * 62.20577 * 15 6 4
18 18 C 1.53000 * 109.47041 * 169.99742 * 17 15 6
19 19 C 1.53003 * 109.46810 * 179.97438 * 18 17 15
20 20 C 1.50698 * 109.46933 * 180.02562 * 19 18 17
21 21 H 1.07998 * 120.00342 * 0.02562 * 20 19 18
22 22 C 1.37876 * 119.99887 * 180.02562 * 20 19 18
23 23 N 1.31517 * 120.00100 * 179.97438 * 22 20 19
24 24 Si 1.86794 * 120.00155 * 359.97438 * 22 20 19
25 25 H 1.48504 * 109.47193 * 89.99806 * 24 22 20
26 26 H 1.48496 * 109.47222 * 210.00125 * 24 22 20
27 27 H 1.48505 * 109.47245 * 330.00589 * 24 22 20
28 28 H 1.08999 * 109.47463 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47242 * 300.00395 * 1 2 3
30 30 H 1.09003 * 109.47415 * 59.99994 * 1 2 3
31 31 H 1.09001 * 109.47242 * 239.99605 * 2 1 3
32 32 H 1.09003 * 109.46902 * 119.99435 * 2 1 3
33 33 H 1.09000 * 109.47222 * 64.99786 * 8 6 4
34 34 H 1.08999 * 109.47025 * 304.99754 * 8 6 4
35 35 H 1.07992 * 119.99949 * 0.02562 * 10 9 8
36 36 H 1.07996 * 120.00281 * 180.23378 * 11 10 9
37 37 H 1.08001 * 119.99759 * 179.72060 * 12 11 10
38 38 H 1.07998 * 120.00069 * 179.97438 * 13 12 11
39 39 H 1.07993 * 120.00159 * 179.97438 * 14 13 12
40 40 H 1.09000 * 109.46951 * 68.34446 * 16 15 6
41 41 H 1.09003 * 109.47024 * 188.33939 * 16 15 6
42 42 H 1.08997 * 109.47544 * 308.34256 * 16 15 6
43 43 H 1.09003 * 109.46597 * 290.00163 * 17 15 6
44 44 H 1.08997 * 109.46739 * 50.00035 * 17 15 6
45 45 H 1.08996 * 109.47483 * 300.00323 * 18 17 15
46 46 H 1.09005 * 109.46538 * 60.00436 * 18 17 15
47 47 H 1.08996 * 109.47724 * 300.00619 * 19 18 17
48 48 H 1.09006 * 109.46575 * 60.00602 * 19 18 17
49 49 H 0.96993 * 120.00047 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5867 0.0015
6 6 3.9207 2.9374 0.0012
7 1 3.4608 3.5212 -0.7963
8 6 3.6398 3.6049 1.3489
9 6 4.1064 5.0373 1.3069
10 6 5.3971 5.3551 1.6862
11 6 5.8266 6.6684 1.6431
12 6 4.9621 7.6651 1.2307
13 6 3.6697 7.3479 0.8564
14 6 3.2417 6.0341 0.8950
15 7 5.3716 2.8672 -0.2176
16 6 6.0313 2.1215 0.8625
17 6 5.6787 2.2782 -1.5279
18 6 7.1696 2.4478 -1.8265
19 6 7.4895 1.8338 -3.1910
20 6 8.9581 2.0002 -3.4848
21 1 9.5993 2.4941 -2.7698
22 6 9.4832 1.5220 -4.6666
23 7 10.7648 1.6677 -4.9233
24 14 8.3744 0.6671 -5.9030
25 1 7.8175 1.6707 -6.8454
26 1 9.1608 -0.3398 -6.6599
27 1 7.2631 -0.0092 -5.1867
28 1 -0.3634 -1.0276 0.0005
29 1 -0.3634 0.5139 0.8899
30 1 -0.3634 0.5138 -0.8900
31 1 1.8933 -0.5139 -0.8899
32 1 1.8933 -0.5138 0.8901
33 1 4.1727 3.0721 2.1364
34 1 2.5692 3.5774 1.5518
35 1 6.0712 4.5770 2.0122
36 1 6.8362 6.9162 1.9358
37 1 5.2962 8.6917 1.2013
38 1 2.9942 8.1267 0.5347
39 1 2.2319 5.7864 0.6030
40 1 5.7454 1.0712 0.8060
41 1 7.1127 2.2098 0.7571
42 1 5.7256 2.5301 1.8256
43 1 5.4286 1.2173 -1.5169
44 1 5.0943 2.7813 -2.2983
45 1 7.4197 3.5086 -1.8374
46 1 7.7539 1.9446 -1.0561
47 1 7.2395 0.7729 -3.1797
48 1 6.9051 2.3366 -3.9616
49 1 11.1343 1.3309 -5.7545
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000171920388.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:37
Heat of formation + Delta-G solvation = -80.452451 kcal
Electronic energy + Delta-G solvation = -27337.563689 eV
Core-core repulsion = 23649.843810 eV
Total energy + Delta-G solvation = -3687.719879 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.09439 -40.12115 -38.97733 -37.29085 -35.96828 -34.47654 -32.96974 -32.63705
-31.62590 -30.25716 -29.01047 -27.17994 -25.58199 -24.16257 -23.31703 -23.18878
-22.15545 -21.66051 -21.09692 -18.94251 -18.88474 -17.97940 -17.60939 -17.30710
-16.93845 -16.32408 -16.11355 -15.97535 -15.57930 -15.48361 -15.19162 -14.83931
-14.74793 -14.29875 -14.03306 -13.81174 -13.72858 -13.59563 -13.41299 -13.30398
-13.03961 -12.88577 -12.81756 -12.60658 -12.50146 -12.45116 -12.23822 -12.02157
-11.80201 -11.70225 -11.59401 -11.53110 -11.49526 -11.34514 -11.28795 -10.77679
-9.65049 -9.47406 -9.32863 -8.31015 -6.34886 0.54904 0.68003 1.07513
1.32594 1.34948 1.47185 1.63727 2.34358 2.73150 3.00967 3.03923
3.59628 3.84785 3.93221 3.97885 4.01737 4.07198 4.09675 4.24151
4.28079 4.30841 4.32754 4.40585 4.47389 4.60641 4.65170 4.71259
4.74857 4.80975 4.83623 4.88140 4.91108 4.91671 4.93774 5.05019
5.10371 5.18719 5.28568 5.32446 5.47475 5.48966 5.57564 5.64202
5.71660 5.78357 5.83133 5.90565 5.93752 6.27788 6.28352 6.67645
6.72623 7.29468 8.86059
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.008608 B = 0.003983 C = 0.002952
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3252.173467 B = 7028.083651 C = 9482.017880
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.051 3.949
3 O -0.357 6.357
4 C 0.435 3.565
5 O -0.528 6.528
6 C 0.100 3.900
7 H 0.129 0.871
8 C -0.061 4.061
9 C -0.077 4.077
10 C -0.106 4.106
11 C -0.137 4.137
12 C -0.133 4.133
13 C -0.130 4.130
14 C -0.121 4.121
15 N -0.499 5.499
16 C -0.001 4.001
17 C 0.054 3.946
18 C -0.081 4.081
19 C -0.009 4.009
20 C -0.531 4.531
21 H 0.031 0.969
22 C 0.004 3.996
23 N -0.951 5.951
24 Si 0.951 3.049
25 H -0.262 1.262
26 H -0.281 1.281
27 H -0.253 1.253
28 H 0.095 0.905
29 H 0.074 0.926
30 H 0.068 0.932
31 H 0.058 0.942
32 H 0.067 0.933
33 H 0.083 0.917
34 H 0.109 0.891
35 H 0.118 0.882
36 H 0.124 0.876
37 H 0.132 0.868
38 H 0.139 0.861
39 H 0.141 0.859
40 H 0.047 0.953
41 H 0.062 0.938
42 H 0.087 0.913
43 H 0.037 0.963
44 H 0.075 0.925
45 H 0.052 0.948
46 H 0.044 0.956
47 H 0.011 0.989
48 H 0.019 0.981
49 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.412 5.601 15.781 30.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.023 4.023
3 O -0.273 6.273
4 C 0.277 3.723
5 O -0.418 6.418
6 C -0.011 4.011
7 H 0.147 0.853
8 C -0.099 4.099
9 C -0.077 4.077
10 C -0.124 4.124
11 C -0.155 4.155
12 C -0.151 4.151
13 C -0.148 4.148
14 C -0.139 4.139
15 N -0.221 5.221
16 C -0.148 4.148
17 C -0.074 4.074
18 C -0.119 4.119
19 C -0.046 4.046
20 C -0.569 4.569
21 H 0.049 0.951
22 C -0.192 4.192
23 N -0.592 5.592
24 Si 0.774 3.226
25 H -0.187 1.187
26 H -0.207 1.207
27 H -0.177 1.177
28 H 0.114 0.886
29 H 0.093 0.907
30 H 0.087 0.913
31 H 0.076 0.924
32 H 0.085 0.915
33 H 0.101 0.899
34 H 0.127 0.873
35 H 0.136 0.864
36 H 0.142 0.858
37 H 0.150 0.850
38 H 0.157 0.843
39 H 0.158 0.842
40 H 0.066 0.934
41 H 0.081 0.919
42 H 0.105 0.895
43 H 0.055 0.945
44 H 0.093 0.907
45 H 0.071 0.929
46 H 0.063 0.937
47 H 0.030 0.970
48 H 0.038 0.962
49 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -24.913 5.732 15.673 29.986
hybrid contribution 0.442 -1.502 -0.846 1.780
sum -24.471 4.230 14.827 28.923
Atomic orbital electron populations
1.21804 0.90151 1.04236 1.03903 1.23241 0.97278 0.79685 1.02049
1.86553 1.24177 1.33316 1.83241 1.25858 0.80947 0.94142 0.71317
1.90629 1.60363 1.44483 1.46314 1.21960 0.88442 0.88101 1.02609
0.85317 1.20625 1.03558 0.92198 0.93496 1.19553 0.94165 0.94289
0.99687 1.21153 0.95607 0.96414 0.99224 1.21353 1.00165 0.93426
1.00584 1.21400 0.94390 0.99869 0.99443 1.21383 0.96365 0.97021
1.00058 1.21297 1.00330 0.92640 0.99631 1.62550 1.05276 1.51493
1.02806 1.22823 0.99675 0.97822 0.94466 1.22255 0.97116 0.97703
0.90316 1.21197 0.93956 1.00158 0.96588 1.19473 0.94423 0.95814
0.94940 1.21466 0.94346 1.37355 1.03750 0.95058 1.26014 0.96460
0.96417 1.00332 1.70067 1.14250 1.48632 1.26236 0.85645 0.79205
0.78963 0.78761 1.18725 1.20707 1.17655 0.88603 0.90710 0.91318
0.92380 0.91452 0.89886 0.87277 0.86398 0.85801 0.85017 0.84342
0.84151 0.93439 0.91946 0.89457 0.94478 0.90678 0.92906 0.93702
0.97028 0.96249 0.92444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.55 10.29 71.98 0.74 -0.81 16
2 C 0.05 0.91 6.19 71.98 0.45 1.35 16
3 O -0.36 -7.45 10.22 -51.46 -0.53 -7.98 16
4 C 0.43 10.76 6.59 71.24 0.47 11.23 16
5 O -0.53 -16.56 11.50 21.99 0.25 -16.31 16
6 C 0.10 2.21 2.28 44.17 0.10 2.31 16
7 H 0.13 2.61 8.09 -2.38 -0.02 2.59 16
8 C -0.06 -1.05 4.57 29.85 0.14 -0.91 16
9 C -0.08 -1.47 4.95 -19.86 -0.10 -1.57 16
10 C -0.11 -2.30 9.31 22.27 0.21 -2.09 16
11 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16
12 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16
13 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16
14 C -0.12 -2.06 9.70 22.27 0.22 -1.85 16
15 N -0.50 -13.98 4.17 -901.46 -3.75 -17.74 16
16 C 0.00 -0.02 8.10 127.69 1.03 1.02 16
17 C 0.05 1.84 4.46 86.30 0.38 2.23 16
18 C -0.08 -3.42 5.07 30.60 0.16 -3.27 16
19 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16
20 C -0.53 -32.21 9.66 25.60 0.25 -31.96 16
21 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16
22 C 0.00 0.27 5.47 84.65 0.46 0.73 16
23 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16
24 Si 0.95 46.07 27.47 68.60 1.88 47.96 16
25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16
26 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
27 H -0.25 -11.60 6.54 99.48 0.65 -10.95 16
28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16
32 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16
33 H 0.08 1.41 5.88 -2.39 -0.01 1.40 16
34 H 0.11 1.40 8.09 -2.39 -0.02 1.38 16
35 H 0.12 2.55 6.54 -2.91 -0.02 2.53 16
36 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16
37 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16
38 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16
39 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16
40 H 0.05 1.49 5.42 -2.39 -0.01 1.47 16
41 H 0.06 1.89 6.68 -2.39 -0.02 1.87 16
42 H 0.09 1.92 4.72 -2.39 -0.01 1.91 16
43 H 0.04 1.39 6.11 -2.39 -0.01 1.37 16
44 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16
45 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16
46 H 0.04 1.95 6.65 -2.38 -0.02 1.93 16
47 H 0.01 0.57 7.20 -2.39 -0.02 0.56 16
48 H 0.02 0.92 7.57 -2.38 -0.02 0.91 16
49 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16
Total: -1.00 -73.35 387.26 4.31 -69.03
By element:
Atomic # 1 Polarization: 16.25 SS G_CDS: 0.86 Total: 17.12 kcal
Atomic # 6 Polarization: -36.17 SS G_CDS: 5.29 Total: -30.88 kcal
Atomic # 7 Polarization: -75.49 SS G_CDS: -3.46 Total: -78.95 kcal
Atomic # 8 Polarization: -24.01 SS G_CDS: -0.27 Total: -24.29 kcal
Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.96 kcal
Total: -73.35 4.31 -69.03 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000171920388.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.418 kcal
(2) G-P(sol) polarization free energy of solvation -73.348 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds