Wall clock time and date at job start Tue Mar 31 2020 12:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47316 * 2 1 4 4 N 1.46903 * 109.47404 * 240.00254 * 2 1 3 5 5 C 1.46898 * 111.00055 * 89.33512 * 4 2 1 6 6 H 1.09001 * 109.47227 * 329.27039 * 5 4 2 7 7 C 1.53005 * 109.46867 * 89.26608 * 5 4 2 8 8 C 1.53000 * 109.47215 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47128 * 300.00152 * 8 7 5 10 10 H 1.09001 * 109.47380 * 299.99972 * 9 8 7 11 11 C 1.52998 * 109.47471 * 179.97438 * 9 8 7 12 12 O 1.42897 * 109.47553 * 174.99749 * 11 9 8 13 13 C 1.53005 * 109.47197 * 59.99837 * 9 8 7 14 14 C 1.52998 * 109.47217 * 209.26601 * 5 4 2 15 15 C 1.50701 * 109.47122 * 119.99870 * 2 1 3 16 16 C 1.38297 * 119.93098 * 259.99961 * 15 2 1 17 17 C 1.38099 * 120.06799 * 179.97438 * 16 15 2 18 18 C 1.38880 * 119.92954 * 0.02562 * 17 16 15 19 19 O 1.35755 * 120.06634 * 180.02562 * 18 17 16 20 20 C 1.34825 * 116.99745 * 185.78759 * 19 18 17 21 21 H 1.08004 * 120.00386 * 354.87460 * 20 19 18 22 22 C 1.38655 * 119.99926 * 174.60304 * 20 19 18 23 23 N 1.31554 * 119.99960 * 0.27610 * 22 20 19 24 24 Si 1.86804 * 119.99812 * 180.27323 * 22 20 19 25 25 H 1.48505 * 109.46939 * 89.99995 * 24 22 20 26 26 H 1.48502 * 109.47131 * 209.99923 * 24 22 20 27 27 H 1.48497 * 109.47343 * 330.00165 * 24 22 20 28 28 C 1.38872 * 119.86289 * 0.27066 * 18 17 16 29 29 C 1.38099 * 119.92881 * 359.42978 * 28 18 17 30 30 H 1.08998 * 109.47140 * 295.01675 * 1 2 3 31 31 H 1.09007 * 109.46955 * 55.01447 * 1 2 3 32 32 H 1.08997 * 109.47298 * 175.00856 * 1 2 3 33 33 H 1.00899 * 110.99571 * 325.38249 * 4 2 1 34 34 H 1.09005 * 109.46914 * 299.99891 * 7 5 4 35 35 H 1.08999 * 109.47161 * 59.99767 * 7 5 4 36 36 H 1.09005 * 109.46790 * 59.99639 * 8 7 5 37 37 H 1.08991 * 109.47590 * 179.97438 * 8 7 5 38 38 H 1.09001 * 109.47612 * 295.00346 * 11 9 8 39 39 H 1.09005 * 109.46806 * 54.99892 * 11 9 8 40 40 H 0.96699 * 114.00064 * 180.02562 * 12 11 9 41 41 H 1.08999 * 109.47161 * 60.00238 * 13 9 8 42 42 H 1.09005 * 109.46914 * 180.02562 * 13 9 8 43 43 H 1.09005 * 109.46867 * 299.99812 * 14 5 4 44 44 H 1.08991 * 109.47113 * 59.99801 * 14 5 4 45 45 H 1.07997 * 119.96788 * 359.97438 * 16 15 2 46 46 H 1.07999 * 120.03852 * 180.02562 * 17 16 15 47 47 H 0.97005 * 119.99839 * 180.02562 * 23 22 20 48 48 H 1.07999 * 120.03740 * 179.72836 * 28 18 17 49 49 H 1.08000 * 119.96442 * 180.32132 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.1802 0.2444 -2.3195 6 1 1.4465 1.0456 -2.2311 7 6 3.5900 0.8384 -2.2895 8 6 3.7574 1.8136 -3.4564 9 6 3.5452 1.0704 -4.7768 10 1 4.2789 0.2691 -4.8648 11 6 3.7120 2.0457 -5.9437 12 8 3.6294 1.3304 -7.1780 13 6 2.1354 0.4764 -4.8068 14 6 1.9677 -0.4984 -3.6401 15 6 2.0323 -0.7104 1.2305 16 6 2.4585 0.0212 2.3240 17 6 2.9189 -0.6269 3.4532 18 6 2.9541 -2.0147 3.4898 19 8 3.4056 -2.6547 4.5986 20 6 3.5265 -3.9955 4.5249 21 1 3.1912 -4.5203 3.6425 22 6 4.0866 -4.7001 5.5796 23 7 4.4950 -4.0609 6.6545 24 14 4.2611 -6.5570 5.4743 25 1 5.5761 -6.8973 4.8740 26 1 4.1731 -7.1405 6.8370 27 1 3.1729 -7.1092 4.6281 28 6 2.5311 -2.7464 2.3878 29 6 2.0660 -2.0926 1.2638 30 1 -0.3633 0.4346 0.9312 31 1 -0.3633 0.5893 -0.8420 32 1 -0.3634 -1.0237 -0.0894 33 1 1.4094 -1.4555 -1.4509 34 1 3.7413 1.3675 -1.3486 35 1 4.3237 0.0372 -2.3779 36 1 3.0235 2.6148 -3.3685 37 1 4.7615 2.2371 -3.4349 38 1 2.9228 2.7966 -5.9054 39 1 4.6832 2.5354 -5.8719 40 1 3.7273 1.8871 -7.9626 41 1 1.4016 1.2776 -4.7189 42 1 1.9844 -0.0535 -5.7473 43 1 2.7016 -1.2995 -3.7285 44 1 0.9636 -0.9215 -3.6615 45 1 2.4314 1.1004 2.2948 46 1 3.2513 -0.0551 4.3070 47 1 4.8871 -4.5538 7.3922 48 1 2.5614 -3.8257 2.4116 49 1 1.7321 -2.6611 0.4085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181895774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:04 Heat of formation + Delta-G solvation = -98.371117 kcal Electronic energy + Delta-G solvation = -26489.382714 eV Core-core repulsion = 22800.885823 eV Total energy + Delta-G solvation = -3688.496890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.87871 -40.17816 -38.78206 -37.56387 -36.09672 -34.25533 -32.73772 -31.74099 -31.63451 -29.92060 -28.91218 -27.31029 -25.57984 -24.25556 -23.51370 -23.40355 -21.79113 -21.15494 -20.66747 -19.79847 -18.84017 -18.15765 -17.09208 -16.60714 -16.29629 -15.98842 -15.94842 -15.70663 -15.48376 -15.44651 -15.01581 -14.86928 -14.58729 -14.49823 -14.23962 -13.93082 -13.69013 -13.50609 -13.45064 -13.12788 -13.03574 -12.83677 -12.69369 -12.55086 -12.31372 -12.20683 -12.12482 -12.01887 -11.97249 -11.70211 -11.44231 -11.13778 -11.12481 -11.00148 -10.76251 -10.72834 -9.71147 -9.22800 -8.81811 -8.45396 -6.12993 0.66130 0.77800 1.34616 1.44432 1.52143 2.18801 2.84173 3.12675 3.27794 3.41299 3.57397 3.77112 3.84227 4.01462 4.09792 4.14436 4.24656 4.27265 4.35015 4.41854 4.44749 4.51324 4.55227 4.61500 4.63340 4.65175 4.66993 4.77815 4.79786 4.87526 4.93224 4.97749 5.09645 5.13716 5.16384 5.19850 5.22851 5.30094 5.33301 5.36107 5.38893 5.47467 5.57284 5.66062 5.77528 5.85076 6.05874 6.26711 6.35312 6.59924 6.94560 6.99585 7.82323 8.78118 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.002260 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.933664 B =12385.569428 C =12820.561096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 H 0.086 0.914 4 N -0.690 5.690 5 C 0.095 3.905 6 H 0.054 0.946 7 C -0.105 4.105 8 C -0.105 4.105 9 C -0.089 4.089 10 H 0.059 0.941 11 C 0.080 3.920 12 O -0.595 6.595 13 C -0.100 4.100 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.067 4.067 17 C -0.205 4.205 18 C 0.108 3.892 19 O -0.236 6.236 20 C -0.411 4.411 21 H 0.099 0.901 22 C -0.026 4.026 23 N -0.922 5.922 24 Si 1.018 2.982 25 H -0.264 1.264 26 H -0.270 1.270 27 H -0.253 1.253 28 C -0.245 4.245 29 C -0.048 4.048 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.344 0.656 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.395 0.605 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.146 0.854 46 H 0.110 0.890 47 H 0.272 0.728 48 H 0.114 0.886 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 13.103 -26.477 30.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.036 3.964 3 H 0.104 0.896 4 N -0.321 5.321 5 C -0.014 4.014 6 H 0.072 0.928 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.107 4.107 10 H 0.078 0.922 11 C 0.002 3.998 12 O -0.403 6.403 13 C -0.138 4.138 14 C -0.156 4.156 15 C -0.140 4.140 16 C -0.085 4.085 17 C -0.224 4.224 18 C 0.058 3.942 19 O -0.143 6.143 20 C -0.487 4.487 21 H 0.116 0.884 22 C -0.222 4.222 23 N -0.561 5.561 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.195 1.195 27 H -0.177 1.177 28 C -0.264 4.264 29 C -0.066 4.066 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.164 0.836 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.245 0.755 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.164 0.836 46 H 0.129 0.871 47 H 0.081 0.919 48 H 0.131 0.869 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.738 12.682 -25.483 29.037 hybrid contribution -0.360 -0.426 0.111 0.568 sum -6.098 12.256 -25.373 28.830 Atomic orbital electron populations 1.22417 0.95440 1.02345 1.02561 1.20195 0.92935 0.96392 0.86846 0.89590 1.60500 1.55287 1.12158 1.04186 1.21513 0.96633 0.93935 0.89340 0.92831 1.21492 0.96745 0.98287 0.97844 1.21459 1.02402 0.97817 0.92611 1.21157 0.97929 0.97944 0.93699 0.92242 1.22262 1.00360 0.93589 0.83578 1.86441 1.96479 1.40568 1.16819 1.21397 0.96150 0.98633 0.97582 1.21699 1.01798 0.98385 0.93742 1.19685 1.05075 0.93133 0.96088 1.20852 0.96347 1.00000 0.91342 1.20415 1.10055 0.90841 1.01076 1.19931 0.93784 0.93246 0.87230 1.83935 1.75518 1.22293 1.32539 1.21788 1.42230 0.79484 1.05213 0.88359 1.26588 0.95460 1.06110 0.94091 1.70189 1.40482 1.38615 1.06785 0.84594 0.79587 0.73572 0.78494 1.18904 1.19489 1.17700 1.21247 1.09414 1.00123 0.95597 1.20716 0.95936 0.94472 0.95458 0.92218 0.91154 0.92512 0.83581 0.92582 0.93098 0.90746 0.91255 0.92439 0.92940 0.75549 0.91349 0.92029 0.92389 0.91285 0.83642 0.87147 0.91923 0.86861 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.18 71.98 0.66 -2.51 16 2 C 0.15 3.25 2.59 44.17 0.11 3.37 16 3 H 0.09 1.79 7.29 -2.38 -0.02 1.78 16 4 N -0.69 -14.41 5.46 -473.29 -2.59 -16.99 16 5 C 0.09 1.61 2.30 44.92 0.10 1.72 16 6 H 0.05 0.83 7.48 -2.39 -0.02 0.81 16 7 C -0.11 -1.93 5.47 30.60 0.17 -1.76 16 8 C -0.10 -1.43 5.20 30.59 0.16 -1.27 16 9 C -0.09 -1.28 2.43 -10.79 -0.03 -1.30 16 10 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 11 C 0.08 0.91 6.43 71.98 0.46 1.37 16 12 O -0.59 -7.96 13.19 -148.98 -1.97 -9.92 16 13 C -0.10 -1.42 5.10 30.58 0.16 -1.26 16 14 C -0.12 -1.84 5.15 30.58 0.16 -1.68 16 15 C -0.14 -4.34 4.96 -19.84 -0.10 -4.44 16 16 C -0.07 -2.29 9.66 22.25 0.21 -2.07 16 17 C -0.20 -9.00 9.99 22.39 0.22 -8.77 16 18 C 0.11 5.57 6.65 22.58 0.15 5.72 16 19 O -0.24 -14.67 9.76 -22.75 -0.22 -14.89 16 20 C -0.41 -24.69 9.49 67.92 0.64 -24.04 16 21 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 22 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 23 N -0.92 -57.91 13.67 21.61 0.30 -57.62 16 24 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 28 C -0.24 -11.09 9.17 22.39 0.21 -10.89 16 29 C -0.05 -1.69 9.31 22.25 0.21 -1.49 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.04 7.87 -2.38 -0.02 1.02 16 32 H 0.06 1.09 8.03 -2.39 -0.02 1.07 16 33 H 0.34 6.62 7.45 -89.69 -0.67 5.95 16 34 H 0.06 1.12 7.83 -2.38 -0.02 1.10 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.40 1.69 9.12 -74.06 -0.68 1.01 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.06 0.99 7.82 -2.38 -0.02 0.98 16 43 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.07 0.96 8.12 -2.39 -0.02 0.94 16 45 H 0.15 3.85 8.03 -2.91 -0.02 3.83 16 46 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 47 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 48 H 0.11 5.27 5.64 -2.91 -0.02 5.26 16 49 H 0.13 3.95 7.38 -2.91 -0.02 3.93 16 Total: -1.00 -74.30 388.43 1.12 -73.18 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.40 Total: 30.47 kcal Atomic # 6 Polarization: -54.31 SS G_CDS: 3.97 Total: -50.34 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.29 Total: -74.61 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -2.19 Total: -24.81 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.30 1.12 -73.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181895774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.192 kcal (2) G-P(sol) polarization free energy of solvation -74.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds