Wall clock time and date at job start Tue Mar 31 2020 13:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47121 * 2 1 4 4 C 1.42904 * 114.00305 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84437 * 338.31339 * 4 3 2 6 6 C 1.53788 * 113.61252 * 109.50111 * 4 3 2 7 7 C 1.53782 * 87.07718 * 89.20285 * 6 4 3 8 8 H 1.09000 * 113.61555 * 270.79995 * 7 6 4 9 9 N 1.46903 * 113.61148 * 139.97720 * 7 6 4 10 10 C 1.46904 * 110.99514 * 104.50662 * 9 7 6 11 11 C 1.50700 * 109.46763 * 179.97438 * 10 9 7 12 12 C 1.38309 * 119.93136 * 89.99913 * 11 10 9 13 13 C 1.38098 * 120.07021 * 179.97438 * 12 11 10 14 14 C 1.38875 * 119.93063 * 0.02562 * 13 12 11 15 15 O 1.35755 * 120.06689 * 180.02562 * 14 13 12 16 16 C 1.34822 * 117.00073 * 5.53321 * 15 14 13 17 17 H 1.08004 * 120.00474 * 354.94658 * 16 15 14 18 18 C 1.38660 * 120.00298 * 174.94008 * 16 15 14 19 19 N 1.31556 * 119.99320 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00193 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46999 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47222 * 299.99956 * 20 18 16 23 23 H 1.48497 * 109.47585 * 60.00135 * 20 18 16 24 24 C 1.38883 * 119.86225 * 0.27186 * 14 13 12 25 25 C 1.38098 * 119.92634 * 359.40750 * 24 14 13 26 26 C 1.53778 * 113.69281 * 207.04035 * 4 3 2 27 27 C 1.52994 * 113.61339 * 156.32342 * 26 4 3 28 28 C 1.52996 * 113.61299 * 25.42112 * 26 4 3 29 29 H 1.09008 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47384 * 299.99710 * 1 2 3 31 31 H 1.09000 * 109.47335 * 60.00524 * 1 2 3 32 32 H 1.08999 * 109.47003 * 239.99912 * 2 1 3 33 33 H 1.09000 * 109.47103 * 120.00226 * 2 1 3 34 34 H 1.09001 * 113.61571 * 334.65705 * 6 4 3 35 35 H 1.08998 * 113.68991 * 203.76171 * 6 4 3 36 36 H 1.00899 * 111.00132 * 228.45518 * 9 7 6 37 37 H 1.09000 * 109.47330 * 60.00191 * 10 9 7 38 38 H 1.08997 * 109.46987 * 299.99125 * 10 9 7 39 39 H 1.08001 * 119.96001 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.03432 * 180.02562 * 13 12 11 41 41 H 0.97008 * 119.99684 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.02924 * 179.72630 * 24 14 13 43 43 H 1.08006 * 119.96159 * 180.31539 * 25 24 14 44 44 H 1.09001 * 109.47229 * 157.49780 * 27 26 4 45 45 H 1.08998 * 109.47128 * 277.49905 * 27 26 4 46 46 H 1.09000 * 109.47472 * 37.50014 * 27 26 4 47 47 H 1.09002 * 109.47334 * 322.49713 * 28 26 4 48 48 H 1.09002 * 109.47292 * 82.50350 * 28 26 4 49 49 H 1.09004 * 109.47353 * 202.50597 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9264 0.5631 0.3721 6 6 4.0083 1.9775 -1.3275 7 6 3.8446 3.3956 -0.7555 8 1 2.8715 3.8406 -0.9633 9 7 4.9626 4.2926 -1.0773 10 6 4.5871 5.2444 -2.1313 11 6 5.7561 6.1463 -2.4333 12 6 6.6723 5.7865 -3.4050 13 6 7.7443 6.6110 -3.6845 14 6 7.9023 7.8022 -2.9883 15 8 8.9548 8.6150 -3.2611 16 6 9.7456 8.2660 -4.2957 17 1 9.5775 7.3331 -4.8133 18 6 10.7749 9.1047 -4.6955 19 7 10.9799 10.2409 -4.0648 20 14 11.8701 8.6215 -6.1293 21 1 12.8868 9.6803 -6.3544 22 1 12.5519 7.3388 -5.8211 23 1 11.0429 8.4609 -7.3520 24 6 6.9840 8.1577 -2.0088 25 6 5.9105 7.3321 -1.7387 26 6 3.9475 2.7594 0.6408 27 6 5.3818 2.6569 1.1634 28 6 2.9831 3.3647 1.6627 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3704 1.7776 -2.1884 35 1 5.0467 1.6914 -1.4946 36 1 5.2875 4.7755 -0.2530 37 1 3.7427 5.8455 -1.7942 38 1 4.3076 4.6977 -3.0318 39 1 6.5491 4.8598 -3.9458 40 1 8.4591 6.3297 -4.4436 41 1 11.6997 10.8280 -4.3446 42 1 7.1067 9.0813 -1.4627 43 1 5.1933 7.6105 -0.9806 44 1 5.8173 3.6541 1.2275 45 1 5.3762 2.1986 2.1523 46 1 5.9737 2.0450 0.4827 47 1 1.9576 3.2301 1.3186 48 1 3.1123 2.8666 2.6237 49 1 3.1922 4.4287 1.7739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181933520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:57 Heat of formation + Delta-G solvation = -33.355569 kcal Electronic energy + Delta-G solvation = -26319.397814 eV Core-core repulsion = 22633.720209 eV Total energy + Delta-G solvation = -3685.677605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52225 -39.00123 -37.30711 -36.60789 -33.98414 -32.22656 -31.45357 -30.48773 -30.13213 -29.08773 -27.53354 -25.67971 -24.53483 -23.31675 -22.90091 -22.21472 -21.91879 -20.38770 -18.63979 -17.94531 -17.02588 -16.83549 -16.04619 -15.64504 -15.43997 -15.14363 -14.61409 -14.51456 -14.26175 -13.82947 -13.54636 -13.49847 -13.41662 -13.23039 -12.97623 -12.74941 -12.63270 -12.53093 -12.37630 -12.21116 -12.05177 -11.71702 -11.65000 -11.51274 -11.42981 -11.23989 -11.05018 -10.76113 -10.74236 -10.56592 -10.43733 -10.40669 -10.02470 -9.58304 -9.30163 -8.80640 -8.28654 -8.12633 -7.14505 -6.42762 -4.01435 2.25892 2.33647 3.14759 3.15689 3.18473 3.25950 3.98790 4.25722 4.31016 4.36155 4.64819 4.70135 4.78316 4.83325 4.94322 5.02376 5.06714 5.09002 5.13117 5.29500 5.33897 5.41650 5.44616 5.48589 5.54097 5.54883 5.60440 5.73152 5.75478 5.77325 5.81717 5.85219 5.88240 5.94770 6.00015 6.03065 6.24852 6.27810 6.28996 6.47387 6.74085 6.95033 7.01415 7.08041 7.22664 7.26562 7.44527 7.47375 7.55892 7.86947 8.02495 9.02930 9.73575 10.75261 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.002087 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.145003 B =13413.274470 C =13725.969521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.365 6.365 4 C 0.070 3.930 5 H 0.072 0.928 6 C -0.145 4.145 7 C 0.075 3.925 8 H 0.072 0.928 9 N -0.671 5.671 10 C 0.118 3.882 11 C -0.183 4.183 12 C -0.049 4.049 13 C -0.235 4.235 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.278 1.278 22 H -0.270 1.270 23 H -0.270 1.270 24 C -0.194 4.194 25 C -0.069 4.069 26 C -0.085 4.085 27 C -0.122 4.122 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.341 0.659 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.270 0.730 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.052 0.948 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.960 -18.724 8.846 26.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.284 6.284 4 C 0.012 3.988 5 H 0.090 0.910 6 C -0.183 4.183 7 C -0.036 4.036 8 H 0.090 0.910 9 N -0.303 5.303 10 C -0.011 4.011 11 C -0.184 4.184 12 C -0.068 4.068 13 C -0.255 4.255 14 C 0.101 3.899 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.765 3.235 21 H -0.203 1.203 22 H -0.195 1.195 23 H -0.195 1.195 24 C -0.213 4.213 25 C -0.088 4.088 26 C -0.086 4.086 27 C -0.179 4.179 28 C -0.192 4.192 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.540 -18.578 8.496 26.285 hybrid contribution 0.156 0.103 -0.337 0.385 sum -16.384 -18.475 8.159 26.006 Atomic orbital electron populations 1.21743 0.93814 1.02168 1.03124 1.22494 0.95437 0.84012 0.99976 1.87853 1.19939 1.26013 1.94577 1.23072 0.81182 0.97368 0.97209 0.90995 1.23549 1.01676 0.96291 0.96792 1.23012 0.93382 0.92969 0.94198 0.91020 1.60773 1.33734 1.22947 1.12854 1.20654 0.93858 0.91725 0.94821 1.19136 0.99829 0.97017 1.02436 1.20568 0.93098 0.97341 0.95779 1.21163 1.01688 0.96872 1.05744 1.19398 0.87641 0.89862 0.92962 1.83973 1.32443 1.45289 1.46508 1.21277 1.10490 1.06189 1.08806 0.89131 1.25285 0.97454 0.95028 0.98778 1.70034 1.30486 1.09879 1.39456 0.85786 0.79201 0.78384 0.80090 1.20305 1.19511 1.19522 1.20160 0.96482 1.02117 1.02550 1.20476 0.96453 0.93797 0.98090 1.22322 0.96265 0.95108 0.94901 1.21475 0.93343 1.02871 1.00212 1.21631 0.99624 1.00015 0.97913 0.91198 0.91913 0.91836 0.93420 0.93503 0.91471 0.88495 0.83839 0.95540 0.91321 0.87548 0.85661 0.92016 0.86678 0.87559 0.91402 0.92772 0.91720 0.91463 0.92883 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.42 6.51 37.16 0.24 0.66 16 3 O -0.36 -3.57 8.82 -35.23 -0.31 -3.88 16 4 C 0.07 0.65 3.77 -25.92 -0.10 0.55 16 5 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 6 C -0.14 -1.48 7.36 -25.91 -0.19 -1.67 16 7 C 0.07 0.82 3.49 -66.90 -0.23 0.58 16 8 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 9 N -0.67 -8.42 6.00 -107.12 -0.64 -9.06 16 10 C 0.12 1.63 5.67 -4.97 -0.03 1.60 16 11 C -0.18 -3.13 5.40 -104.57 -0.56 -3.70 16 12 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 13 C -0.24 -5.19 9.17 -39.40 -0.36 -5.55 16 14 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 15 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 16 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 20 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 24 C -0.19 -4.13 9.99 -39.39 -0.39 -4.53 16 25 C -0.07 -1.24 9.69 -39.61 -0.38 -1.62 16 26 C -0.09 -0.81 1.26 -153.70 -0.19 -1.00 16 27 C -0.12 -1.11 8.46 37.15 0.31 -0.80 16 28 C -0.13 -1.24 9.04 37.16 0.34 -0.90 16 29 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.02 7.66 -51.93 -0.40 0.62 16 36 H 0.34 4.28 7.08 -39.29 -0.28 4.01 16 37 H 0.03 0.35 8.07 -51.93 -0.42 -0.07 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 43 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 44 H 0.07 0.66 6.79 -51.93 -0.35 0.31 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.61 7.34 -51.93 -0.38 0.23 16 47 H 0.07 0.67 6.97 -51.93 -0.36 0.31 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -30.25 394.84 -9.09 -39.34 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.20 Total: 6.34 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: -1.62 Total: -24.45 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.12 Total: -33.80 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.31 Total: -9.04 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.25 -9.09 -39.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181933520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.982 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds