Wall clock time and date at job start Tue Mar 31 2020 13:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47121 * 2 1 4 4 C 1.42904 * 114.00305 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.84437 * 338.31339 * 4 3 2 6 6 C 1.53788 * 113.61252 * 109.50111 * 4 3 2 7 7 C 1.53782 * 87.07718 * 89.20285 * 6 4 3 8 8 H 1.09000 * 113.61555 * 270.79995 * 7 6 4 9 9 N 1.46903 * 113.61148 * 139.97720 * 7 6 4 10 10 C 1.46904 * 110.99514 * 104.50662 * 9 7 6 11 11 C 1.50700 * 109.46763 * 179.97438 * 10 9 7 12 12 C 1.38309 * 119.93136 * 89.99913 * 11 10 9 13 13 C 1.38098 * 120.07021 * 179.97438 * 12 11 10 14 14 C 1.38875 * 119.93063 * 0.02562 * 13 12 11 15 15 O 1.35755 * 120.06689 * 180.02562 * 14 13 12 16 16 C 1.34822 * 117.00073 * 5.53321 * 15 14 13 17 17 H 1.08004 * 120.00474 * 354.94658 * 16 15 14 18 18 C 1.38660 * 120.00298 * 174.94008 * 16 15 14 19 19 N 1.31556 * 119.99320 * 0.02562 * 18 16 15 20 20 Si 1.86790 * 120.00193 * 180.02562 * 18 16 15 21 21 H 1.48509 * 109.46999 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47222 * 299.99956 * 20 18 16 23 23 H 1.48497 * 109.47585 * 60.00135 * 20 18 16 24 24 C 1.38883 * 119.86225 * 0.27186 * 14 13 12 25 25 C 1.38098 * 119.92634 * 359.40750 * 24 14 13 26 26 C 1.53778 * 113.69281 * 207.04035 * 4 3 2 27 27 C 1.52994 * 113.61339 * 156.32342 * 26 4 3 28 28 C 1.52996 * 113.61299 * 25.42112 * 26 4 3 29 29 H 1.09008 * 109.47052 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47384 * 299.99710 * 1 2 3 31 31 H 1.09000 * 109.47335 * 60.00524 * 1 2 3 32 32 H 1.08999 * 109.47003 * 239.99912 * 2 1 3 33 33 H 1.09000 * 109.47103 * 120.00226 * 2 1 3 34 34 H 1.09001 * 113.61571 * 334.65705 * 6 4 3 35 35 H 1.08998 * 113.68991 * 203.76171 * 6 4 3 36 36 H 1.00899 * 111.00132 * 228.45518 * 9 7 6 37 37 H 1.09000 * 109.47330 * 60.00191 * 10 9 7 38 38 H 1.08997 * 109.46987 * 299.99125 * 10 9 7 39 39 H 1.08001 * 119.96001 * 359.97438 * 12 11 10 40 40 H 1.07999 * 120.03432 * 180.02562 * 13 12 11 41 41 H 0.97008 * 119.99684 * 180.02562 * 19 18 16 42 42 H 1.07997 * 120.02924 * 179.72630 * 24 14 13 43 43 H 1.08006 * 119.96159 * 180.31539 * 25 24 14 44 44 H 1.09001 * 109.47229 * 157.49780 * 27 26 4 45 45 H 1.08998 * 109.47128 * 277.49905 * 27 26 4 46 46 H 1.09000 * 109.47472 * 37.50014 * 27 26 4 47 47 H 1.09002 * 109.47334 * 322.49713 * 28 26 4 48 48 H 1.09002 * 109.47292 * 82.50350 * 28 26 4 49 49 H 1.09004 * 109.47353 * 202.50597 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9264 0.5631 0.3721 6 6 4.0083 1.9775 -1.3275 7 6 3.8446 3.3956 -0.7555 8 1 2.8715 3.8406 -0.9633 9 7 4.9626 4.2926 -1.0773 10 6 4.5871 5.2444 -2.1313 11 6 5.7561 6.1463 -2.4333 12 6 6.6723 5.7865 -3.4050 13 6 7.7443 6.6110 -3.6845 14 6 7.9023 7.8022 -2.9883 15 8 8.9548 8.6150 -3.2611 16 6 9.7456 8.2660 -4.2957 17 1 9.5775 7.3331 -4.8133 18 6 10.7749 9.1047 -4.6955 19 7 10.9799 10.2409 -4.0648 20 14 11.8701 8.6215 -6.1293 21 1 12.8868 9.6803 -6.3544 22 1 12.5519 7.3388 -5.8211 23 1 11.0429 8.4609 -7.3520 24 6 6.9840 8.1577 -2.0088 25 6 5.9105 7.3321 -1.7387 26 6 3.9475 2.7594 0.6408 27 6 5.3818 2.6569 1.1634 28 6 2.9831 3.3647 1.6627 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.3704 1.7776 -2.1884 35 1 5.0467 1.6914 -1.4946 36 1 5.2875 4.7755 -0.2530 37 1 3.7427 5.8455 -1.7942 38 1 4.3076 4.6977 -3.0318 39 1 6.5491 4.8598 -3.9458 40 1 8.4591 6.3297 -4.4436 41 1 11.6997 10.8280 -4.3446 42 1 7.1067 9.0813 -1.4627 43 1 5.1933 7.6105 -0.9806 44 1 5.8173 3.6541 1.2275 45 1 5.3762 2.1986 2.1523 46 1 5.9737 2.0450 0.4827 47 1 1.9576 3.2301 1.3186 48 1 3.1123 2.8666 2.6237 49 1 3.1922 4.4287 1.7739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181933520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:56 Heat of formation + Delta-G solvation = -50.913984 kcal Electronic energy + Delta-G solvation = -26320.159204 eV Core-core repulsion = 22633.720209 eV Total energy + Delta-G solvation = -3686.438995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.31950 -40.72671 -38.60366 -37.73905 -35.18470 -34.18303 -32.04306 -31.77802 -31.38032 -30.41258 -28.25131 -27.54668 -25.89867 -24.02771 -23.68047 -23.58425 -23.02967 -21.94685 -19.82742 -19.43305 -18.79326 -17.74912 -16.86326 -16.49982 -16.43923 -16.23403 -16.16695 -15.89275 -15.70538 -15.46085 -14.96718 -14.80684 -14.38926 -14.19974 -14.13123 -13.95548 -13.73263 -13.50990 -13.26204 -13.11035 -13.02557 -12.94809 -12.84180 -12.59151 -12.41648 -12.36442 -12.24581 -12.18983 -12.14031 -11.97206 -11.67385 -11.20879 -11.15505 -10.89753 -10.75941 -10.27805 -9.75925 -9.29775 -8.88110 -8.46187 -6.14189 0.62094 0.69884 1.35200 1.45953 1.51451 2.18669 2.62173 2.80314 3.13013 3.49456 3.51409 3.54896 3.62766 3.90623 4.05875 4.09995 4.16430 4.21884 4.23399 4.28405 4.33968 4.44384 4.50405 4.53102 4.62241 4.63594 4.73906 4.80930 4.82053 4.86698 4.87069 5.02915 5.04437 5.05308 5.08826 5.10943 5.17095 5.21590 5.26132 5.29032 5.32263 5.53117 5.53847 5.58954 5.73478 5.84627 6.03986 6.18433 6.27962 6.38804 6.52288 6.98466 7.79644 8.76799 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.002087 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.145003 B =13413.274470 C =13725.969521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.381 6.381 4 C 0.075 3.925 5 H 0.084 0.916 6 C -0.143 4.143 7 C 0.074 3.926 8 H 0.066 0.934 9 N -0.674 5.674 10 C 0.122 3.878 11 C -0.155 4.155 12 C -0.049 4.049 13 C -0.244 4.244 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.414 4.414 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.271 1.271 22 H -0.257 1.257 23 H -0.258 1.258 24 C -0.204 4.204 25 C -0.060 4.060 26 C -0.081 4.081 27 C -0.119 4.119 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.343 0.657 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.112 0.888 43 H 0.145 0.855 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.828 -21.492 9.146 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.300 6.300 4 C 0.017 3.983 5 H 0.102 0.898 6 C -0.182 4.182 7 C -0.036 4.036 8 H 0.083 0.917 9 N -0.306 5.306 10 C -0.006 4.006 11 C -0.156 4.156 12 C -0.068 4.068 13 C -0.263 4.263 14 C 0.063 3.937 15 O -0.140 6.140 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.196 1.196 22 H -0.182 1.182 23 H -0.182 1.182 24 C -0.223 4.223 25 C -0.079 4.079 26 C -0.082 4.082 27 C -0.177 4.177 28 C -0.188 4.188 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.162 0.838 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.465 -21.392 8.817 29.602 hybrid contribution 0.401 0.771 -0.268 0.910 sum -18.063 -20.620 8.549 28.715 Atomic orbital electron populations 1.21754 0.93079 1.03232 1.02560 1.22678 0.96091 0.83092 1.00677 1.87840 1.20039 1.27552 1.94602 1.23020 0.81272 0.97684 0.96368 0.89791 1.23521 1.01551 0.95865 0.97237 1.23027 0.92347 0.92736 0.95518 0.91655 1.60729 1.34582 1.22584 1.12685 1.20621 0.92418 0.91688 0.95867 1.19600 0.99481 0.96596 0.99948 1.20881 0.92053 0.97689 0.96179 1.21249 1.02767 0.96734 1.05528 1.19946 0.88074 0.90812 0.94857 1.83936 1.34603 1.47475 1.47963 1.21770 1.11058 1.06904 1.09247 0.88217 1.26591 0.98844 0.94812 1.01854 1.70183 1.31982 1.11650 1.42068 0.84655 0.76992 0.78482 0.76136 1.19579 1.18166 1.18219 1.20423 0.97070 1.02868 1.01980 1.20865 0.95558 0.93112 0.98325 1.22299 0.96599 0.95058 0.94202 1.21455 0.92862 1.02522 1.00837 1.21586 0.98989 1.00057 0.98157 0.89362 0.92262 0.92571 0.92979 0.92497 0.91839 0.88724 0.83726 0.94016 0.90542 0.84818 0.86544 0.91870 0.86968 0.83776 0.92041 0.91536 0.92072 0.92282 0.92072 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.63 6.51 71.98 0.47 1.10 16 3 O -0.38 -6.62 8.82 -148.98 -1.31 -7.93 16 4 C 0.08 1.21 3.77 31.12 0.12 1.33 16 5 H 0.08 1.15 7.85 -2.38 -0.02 1.13 16 6 C -0.14 -2.59 7.36 31.12 0.23 -2.36 16 7 C 0.07 1.41 3.49 45.44 0.16 1.57 16 8 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 9 N -0.67 -14.81 6.00 -492.83 -2.95 -17.76 16 10 C 0.12 2.94 5.67 85.56 0.49 3.43 16 11 C -0.16 -4.87 5.40 -19.83 -0.11 -4.98 16 12 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 13 C -0.24 -10.86 9.17 22.39 0.21 -10.65 16 14 C 0.11 5.75 6.65 22.58 0.15 5.90 16 15 O -0.23 -14.28 9.76 -22.72 -0.22 -14.50 16 16 C -0.41 -24.49 9.49 67.92 0.64 -23.84 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 19 N -0.92 -57.13 13.67 21.61 0.30 -56.84 16 20 Si 1.02 43.39 29.55 68.60 2.03 45.41 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 C -0.20 -8.79 9.99 22.39 0.22 -8.56 16 25 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 26 C -0.08 -1.33 1.26 -51.66 -0.07 -1.40 16 27 C -0.12 -1.88 8.46 71.98 0.61 -1.27 16 28 C -0.13 -2.09 9.04 71.98 0.65 -1.44 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.77 7.66 -2.39 -0.02 1.75 16 36 H 0.34 7.52 7.08 -89.69 -0.64 6.89 16 37 H 0.04 0.92 8.07 -2.39 -0.02 0.90 16 38 H 0.08 1.79 8.08 -2.39 -0.02 1.78 16 39 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 41 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 42 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.06 1.05 6.79 -2.39 -0.02 1.03 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 1.01 7.34 -2.39 -0.02 0.99 16 47 H 0.06 1.05 6.97 -2.39 -0.02 1.04 16 48 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -69.48 394.84 3.53 -65.95 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: 0.29 Total: 31.87 kcal Atomic # 6 Polarization: -51.61 SS G_CDS: 5.41 Total: -46.21 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -2.66 Total: -74.60 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -1.54 Total: -22.43 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.48 3.53 -65.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181933520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.034 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds