Wall clock time and date at job start Tue Mar 31 2020 12:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 O 1.42897 * 109.46745 * 119.99552 * 2 1 3 5 5 C 1.35898 * 117.00452 * 275.16820 * 4 2 1 6 6 C 1.38737 * 120.05199 * 5.19841 * 5 4 2 7 7 C 1.38144 * 119.93977 * 180.29775 * 6 5 4 8 8 C 1.38268 * 120.05997 * 359.95028 * 7 6 5 9 9 C 1.50693 * 119.94397 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47170 * 240.02145 * 9 8 7 11 11 C 1.53004 * 109.47470 * 0.02562 * 9 8 7 12 12 C 1.53004 * 109.47108 * 120.02392 * 9 8 7 13 13 C 1.38264 * 120.10968 * 0.04835 * 8 7 6 14 14 C 1.38145 * 120.05717 * 359.97438 * 13 8 7 15 15 C 1.50694 * 109.47058 * 239.99761 * 2 1 3 16 16 O 1.21276 * 120.00146 * 244.99706 * 15 2 1 17 17 N 1.34774 * 119.99999 * 65.00269 * 15 2 1 18 18 C 1.46505 * 120.00210 * 179.97438 * 17 15 2 19 19 C 1.52995 * 109.47407 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47139 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00168 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00141 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00092 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99853 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47627 * 89.99752 * 24 22 20 26 26 H 1.48504 * 109.47265 * 209.99515 * 24 22 20 27 27 H 1.48503 * 109.47007 * 329.99273 * 24 22 20 28 28 H 1.08991 * 109.47381 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47065 * 300.00776 * 1 2 3 30 30 H 1.09006 * 109.46679 * 59.99770 * 1 2 3 31 31 H 1.08001 * 120.02716 * 0.24808 * 6 5 4 32 32 H 1.08004 * 119.96913 * 179.97438 * 7 6 5 33 33 H 1.08999 * 109.47218 * 60.00212 * 10 9 8 34 34 H 1.08997 * 109.47329 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47020 * 300.00460 * 10 9 8 36 36 H 1.09002 * 109.46928 * 60.00313 * 11 9 8 37 37 H 1.09002 * 109.46973 * 180.02562 * 11 9 8 38 38 H 1.08999 * 109.46623 * 300.00203 * 11 9 8 39 39 H 1.08992 * 109.47143 * 59.99929 * 12 9 8 40 40 H 1.09006 * 109.46831 * 180.02562 * 12 9 8 41 41 H 1.08993 * 109.47083 * 299.99758 * 12 9 8 42 42 H 1.07994 * 119.97445 * 179.97438 * 13 8 7 43 43 H 1.07998 * 120.03188 * 179.97438 * 14 13 8 44 44 H 0.97002 * 120.00547 * 0.02562 * 17 15 2 45 45 H 1.09006 * 109.46498 * 300.00162 * 18 17 15 46 46 H 1.08993 * 109.47178 * 59.99606 * 18 17 15 47 47 H 1.08994 * 109.47089 * 300.00218 * 19 18 17 48 48 H 1.09006 * 109.47093 * 59.99786 * 19 18 17 49 49 H 0.97006 * 119.99559 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1091 0.0618 2.3050 6 6 1.6583 1.3737 2.3277 7 6 1.7695 2.1210 3.4842 8 6 2.3287 1.5624 4.6187 9 6 2.4482 2.3799 5.8790 10 6 3.9212 2.4890 6.2783 11 6 1.8809 3.7797 5.6348 12 6 1.6640 1.7008 7.0037 13 6 2.7787 0.2552 4.5986 14 6 2.6701 -0.4962 3.4446 15 6 2.0324 -0.7104 -1.2304 16 8 2.6530 -1.7466 -1.1214 17 7 1.7920 -0.1942 -2.4519 18 6 2.2808 -0.8846 -3.6481 19 6 1.8765 -0.0942 -4.8942 20 6 2.3799 -0.8040 -6.1245 21 1 2.9325 -1.7269 -6.0275 22 6 2.1341 -0.2759 -7.3742 23 7 2.5729 -0.8957 -8.4479 24 14 1.1777 1.3199 -7.5421 25 1 2.1202 2.4671 -7.5157 26 1 0.4350 1.3189 -8.8281 27 1 0.2173 1.4422 -6.4160 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.2215 1.8105 1.4418 32 1 1.4191 3.1425 3.5023 33 1 4.4799 2.9728 5.4771 34 1 4.0078 3.0807 7.1896 35 1 4.3254 1.4918 6.4523 36 1 0.8315 3.7019 5.3505 37 1 1.9678 4.3711 6.5464 38 1 2.4396 4.2634 4.8336 39 1 2.0681 0.7037 7.1777 40 1 1.7501 2.2924 7.9152 41 1 0.6147 1.6231 6.7193 42 1 3.2154 -0.1788 5.4859 43 1 3.0222 -1.5171 3.4292 44 1 1.2959 0.6348 -2.5392 45 1 3.3672 -0.9624 -3.6042 46 1 1.8466 -1.8832 -3.6942 47 1 0.7903 -0.0159 -4.9382 48 1 2.3111 0.9044 -4.8478 49 1 2.3996 -0.5242 -9.3271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273034774.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:18 Heat of formation + Delta-G solvation = -90.433051 kcal Electronic energy + Delta-G solvation = -26105.316617 eV Core-core repulsion = 22417.163948 eV Total energy + Delta-G solvation = -3688.152670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74816 -40.67915 -39.32584 -36.75317 -36.43556 -34.89612 -33.41852 -32.12804 -31.48622 -29.88912 -28.19775 -28.04845 -27.18209 -25.45830 -23.58593 -23.53986 -22.63388 -21.41065 -20.08445 -19.43841 -18.97160 -18.43087 -17.16199 -16.94224 -16.46682 -16.24392 -16.19744 -16.08433 -15.70197 -15.17583 -15.07896 -14.85175 -14.72039 -14.59437 -14.23371 -14.21318 -13.68937 -13.56165 -13.38000 -13.31738 -13.10765 -13.03738 -12.78887 -12.72031 -12.49665 -12.24883 -12.18710 -12.10419 -12.00057 -11.75729 -11.63752 -11.57014 -11.52336 -11.30392 -10.86042 -10.78861 -10.16187 -9.92970 -9.02629 -8.29839 -6.37727 0.40066 0.45783 1.39825 1.42884 1.44878 1.53931 1.58113 2.37353 2.59115 2.79810 3.05238 3.49689 3.69453 3.73500 3.81818 3.86556 3.97505 4.14594 4.17841 4.30988 4.38380 4.39653 4.43392 4.48858 4.62026 4.65161 4.72576 4.76076 4.83329 4.84624 4.95467 5.03168 5.06290 5.08327 5.09050 5.11653 5.12990 5.25689 5.35925 5.37074 5.39407 5.42851 5.48988 5.54016 5.61505 5.75184 5.84373 6.21180 6.35860 6.53422 6.70401 7.14478 7.26797 8.86939 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026099 B = 0.002049 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.596634 B =13664.048078 C =14164.386388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.126 0.874 4 O -0.317 6.317 5 C 0.103 3.897 6 C -0.210 4.210 7 C -0.083 4.083 8 C -0.110 4.110 9 C -0.025 4.025 10 C -0.139 4.139 11 C -0.144 4.144 12 C -0.138 4.138 13 C -0.077 4.077 14 C -0.167 4.167 15 C 0.508 3.492 16 O -0.578 6.578 17 N -0.705 5.705 18 C 0.144 3.856 19 C -0.012 4.012 20 C -0.541 4.541 21 H 0.026 0.974 22 C 0.002 3.998 23 N -0.951 5.951 24 Si 0.961 3.039 25 H -0.265 1.265 26 H -0.288 1.288 27 H -0.232 1.232 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.142 0.858 43 H 0.122 0.878 44 H 0.418 0.582 45 H 0.043 0.957 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 14.384 33.332 36.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 H 0.144 0.856 4 O -0.230 6.230 5 C 0.058 3.942 6 C -0.228 4.228 7 C -0.100 4.100 8 C -0.111 4.111 9 C -0.025 4.025 10 C -0.196 4.196 11 C -0.202 4.202 12 C -0.195 4.195 13 C -0.095 4.095 14 C -0.186 4.186 15 C 0.294 3.706 16 O -0.457 6.457 17 N -0.358 5.358 18 C 0.021 3.979 19 C -0.050 4.050 20 C -0.580 4.580 21 H 0.045 0.955 22 C -0.195 4.195 23 N -0.591 5.591 24 Si 0.783 3.217 25 H -0.190 1.190 26 H -0.214 1.214 27 H -0.155 1.155 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.159 0.841 43 H 0.140 0.860 44 H 0.255 0.745 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.739 13.436 33.190 36.263 hybrid contribution -0.068 0.093 -1.099 1.105 sum -5.807 13.529 32.091 35.307 Atomic orbital electron populations 1.22351 0.90287 1.04166 1.05888 1.22293 0.97269 0.97156 0.81902 0.85621 1.86176 1.81704 1.38516 1.16646 1.19341 0.97073 0.91465 0.86286 1.21525 1.06640 0.93321 1.01311 1.21271 0.97036 1.00504 0.91232 1.20006 1.00563 0.94435 0.96066 1.19480 0.96517 0.94814 0.91706 1.21903 0.94125 1.02106 1.01498 1.21972 1.01011 0.94788 1.02385 1.21892 0.99651 1.00534 0.97424 1.20949 0.98008 0.93703 0.96836 1.20602 1.04377 1.01558 0.92037 1.20805 0.79341 0.85125 0.85319 1.90709 1.42065 1.25732 1.87214 1.45884 1.57142 1.28143 1.04659 1.21085 0.97823 0.95685 0.83323 1.19655 0.97888 0.96268 0.91139 1.21254 1.35969 1.09214 0.91524 0.95538 1.26128 0.96485 1.01924 0.94978 1.70088 1.47972 1.42109 0.98929 0.85515 0.79426 0.78172 0.78604 1.18987 1.21429 1.15492 0.92276 0.88745 0.87700 0.83389 0.83206 0.93155 0.91247 0.92567 0.91974 0.91449 0.92224 0.92555 0.91294 0.92899 0.84060 0.85971 0.74464 0.93826 0.93684 0.94011 0.94290 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.12 71.98 0.66 -2.19 16 2 C 0.07 1.70 2.64 29.85 0.08 1.78 16 3 H 0.13 2.13 6.31 -2.39 -0.02 2.11 16 4 O -0.32 -9.13 9.34 -73.41 -0.69 -9.82 16 5 C 0.10 2.43 6.60 22.51 0.15 2.58 16 6 C -0.21 -3.68 8.24 22.37 0.18 -3.49 16 7 C -0.08 -1.22 8.97 22.25 0.20 -1.02 16 8 C -0.11 -1.65 4.76 -19.85 -0.09 -1.74 16 9 C -0.03 -0.27 0.85 -52.93 -0.05 -0.31 16 10 C -0.14 -1.40 8.29 71.98 0.60 -0.80 16 11 C -0.14 -1.20 7.13 71.98 0.51 -0.68 16 12 C -0.14 -1.29 8.29 71.98 0.60 -0.70 16 13 C -0.08 -1.32 8.70 22.25 0.19 -1.13 16 14 C -0.17 -3.72 9.99 22.37 0.22 -3.50 16 15 C 0.51 16.62 7.18 87.66 0.63 17.25 16 16 O -0.58 -25.47 16.51 15.97 0.26 -25.21 16 17 N -0.70 -21.30 5.52 -463.07 -2.55 -23.85 16 18 C 0.14 5.83 5.61 86.38 0.48 6.31 16 19 C -0.01 -0.51 4.15 29.85 0.12 -0.38 16 20 C -0.54 -30.65 9.66 25.60 0.25 -30.41 16 21 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 22 C 0.00 0.11 5.47 84.65 0.46 0.57 16 23 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 24 Si 0.96 41.37 27.47 68.60 1.88 43.25 16 25 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.23 -8.67 6.54 99.48 0.65 -8.02 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.23 6.91 -2.39 -0.02 1.21 16 30 H 0.10 1.25 7.93 -2.38 -0.02 1.23 16 31 H 0.15 1.91 5.43 -2.91 -0.02 1.89 16 32 H 0.15 1.51 5.89 -2.91 -0.02 1.49 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.57 7.38 -2.39 -0.02 0.56 16 36 H 0.06 0.48 7.51 -2.39 -0.02 0.47 16 37 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.06 0.50 7.51 -2.39 -0.02 0.48 16 39 H 0.06 0.54 7.38 -2.39 -0.02 0.52 16 40 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.14 1.86 7.09 -2.91 -0.02 1.84 16 43 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.42 9.00 8.26 -92.71 -0.77 8.23 16 45 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.04 1.66 7.20 -2.39 -0.02 1.65 16 48 H 0.04 1.54 7.57 -2.38 -0.02 1.52 16 49 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -76.92 391.06 4.52 -72.40 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.12 Total: 19.92 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 5.20 Total: -17.88 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -2.26 Total: -82.66 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.42 Total: -35.02 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Total: -76.92 4.52 -72.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273034774.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.038 kcal (2) G-P(sol) polarization free energy of solvation -76.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds