Wall clock time and date at job start Tue Mar 31 2020 12:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47210 * 2 1 4 4 C 1.46497 * 120.00200 * 270.00246 * 3 2 1 5 5 C 1.50707 * 109.47202 * 270.00026 * 4 3 2 6 6 H 1.07999 * 119.99508 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00285 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99964 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00199 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46766 * 90.00084 * 9 7 5 11 11 H 1.48501 * 109.47314 * 210.00240 * 9 7 5 12 12 H 1.48494 * 109.46987 * 330.00597 * 9 7 5 13 13 C 1.34778 * 120.00131 * 90.00026 * 3 2 1 14 14 O 1.21280 * 120.00319 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99488 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.46640 * 179.97438 * 15 13 3 17 17 O 1.42902 * 109.46925 * 180.02562 * 16 15 13 18 18 C 1.35905 * 116.99941 * 180.02562 * 17 16 15 19 19 C 1.38738 * 120.05455 * 179.97438 * 18 17 16 20 20 C 1.38139 * 119.94262 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.05734 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.94544 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47083 * 239.99774 * 22 21 20 24 24 C 1.52997 * 109.47078 * 119.99901 * 22 21 20 25 25 C 1.38274 * 120.11129 * 0.25057 * 21 20 19 26 26 C 1.38140 * 120.05195 * 359.45387 * 25 21 20 27 27 H 1.09001 * 109.47329 * 59.99751 * 1 2 3 28 28 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46752 * 299.99833 * 1 2 3 30 30 H 1.09000 * 109.46752 * 240.00167 * 2 1 3 31 31 H 1.08996 * 109.46889 * 120.00094 * 2 1 3 32 32 H 1.09001 * 109.47337 * 29.99763 * 4 3 2 33 33 H 1.08993 * 109.47322 * 150.00240 * 4 3 2 34 34 H 0.97002 * 120.00614 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47325 * 59.99912 * 15 13 3 36 36 H 1.08993 * 109.47420 * 299.99612 * 15 13 3 37 37 H 1.08994 * 109.47430 * 59.99670 * 16 15 13 38 38 H 1.09006 * 109.47273 * 299.99802 * 16 15 13 39 39 H 1.07997 * 120.02456 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.97261 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46959 * 359.97438 * 22 21 20 42 42 H 1.09004 * 109.46724 * 60.00424 * 23 22 21 43 43 H 1.09001 * 109.47194 * 179.97438 * 23 22 21 44 44 H 1.08992 * 109.47399 * 299.99938 * 23 22 21 45 45 H 1.08998 * 109.47533 * 179.97438 * 24 22 21 46 46 H 1.08996 * 109.47853 * 300.00179 * 24 22 21 47 47 H 1.09002 * 109.47153 * 60.00207 * 24 22 21 48 48 H 1.08000 * 119.96815 * 179.70256 * 25 21 20 49 49 H 1.08005 * 120.02747 * 180.24921 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6180 9 14 5.9136 2.0967 -3.4169 10 1 5.9775 0.8753 -4.2592 11 1 6.3922 3.2639 -4.2003 12 1 6.7736 1.9178 -2.2197 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3058 2.4723 16 6 2.3243 2.2431 3.6352 17 8 2.0872 1.5690 4.8728 18 6 2.3340 2.2668 6.0126 19 6 2.1249 1.6739 7.2493 20 6 2.3760 2.3855 8.4064 21 6 2.8348 3.6878 8.3327 22 6 3.1074 4.4619 9.5966 23 6 2.2224 5.7096 9.6313 24 6 4.5789 4.8793 9.6317 25 6 3.0385 4.2829 7.1013 26 6 2.7947 3.5735 5.9413 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 3.6749 3.5157 -4.4443 35 1 2.6229 0.4185 2.5298 36 1 0.9446 1.0113 2.5303 37 1 1.6942 3.1306 3.5779 38 1 3.3723 2.5372 3.5771 39 1 1.7662 0.6569 7.3073 40 1 2.2139 1.9243 9.3694 41 1 2.8862 3.8358 10.4610 42 1 1.1740 5.4121 9.6064 43 1 2.4192 6.2693 10.5457 44 1 2.4431 6.3358 8.7670 45 1 4.7760 5.4397 10.5456 46 1 5.2094 3.9906 9.6069 47 1 4.7996 5.5056 8.7673 48 1 3.3923 5.3018 7.0465 49 1 2.9578 4.0374 4.9797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343875335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:44 Heat of formation + Delta-G solvation = -72.132345 kcal Electronic energy + Delta-G solvation = -26131.376612 eV Core-core repulsion = 22444.017521 eV Total energy + Delta-G solvation = -3687.359092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33541 -39.21355 -38.12411 -35.40118 -34.99354 -32.92165 -31.73605 -31.06860 -30.10491 -28.89443 -27.40283 -27.19822 -24.67631 -23.45115 -23.04793 -22.60716 -21.44965 -20.21004 -18.64533 -17.98284 -16.67264 -16.46122 -16.18203 -15.89609 -15.61264 -15.38437 -14.60767 -14.53667 -14.45403 -14.18264 -13.75327 -13.54254 -13.50414 -13.39917 -13.17947 -12.79138 -12.76279 -12.54941 -12.23759 -12.03558 -11.86932 -11.72960 -11.58040 -11.34977 -11.28085 -11.15113 -11.00457 -10.92999 -10.79690 -10.67480 -10.57025 -10.48758 -10.15453 -9.66397 -9.09811 -9.01860 -8.45713 -8.12967 -7.72192 -6.06545 -4.11382 1.24713 1.32570 3.03237 3.28499 3.32008 3.35808 3.41004 3.64633 4.02421 4.43345 4.45729 4.55189 4.78695 4.83431 4.94178 4.97268 5.06187 5.15071 5.18083 5.22481 5.28444 5.30301 5.32060 5.35258 5.48487 5.55867 5.56500 5.61573 5.63125 5.69959 5.74346 5.87021 5.89314 5.91393 5.96535 5.97638 6.05318 6.21628 6.21791 6.31713 6.47607 6.52013 6.69687 7.02259 7.39318 7.40981 7.50057 7.89545 8.20662 8.35531 8.85668 9.01733 9.53746 11.01560 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.002333 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.415499 B =11997.015926 C =13026.608123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.510 3.490 14 O -0.544 6.544 15 C -0.140 4.140 16 C 0.076 3.924 17 O -0.319 6.319 18 C 0.133 3.867 19 C -0.154 4.154 20 C -0.081 4.081 21 C -0.121 4.121 22 C -0.051 4.051 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.073 4.073 26 C -0.204 4.204 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.122 0.878 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -2.630 24.202 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.325 5.325 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.297 3.703 14 O -0.423 6.423 15 C -0.180 4.180 16 C 0.001 3.999 17 O -0.233 6.233 18 C 0.087 3.913 19 C -0.172 4.172 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.069 4.069 23 C -0.202 4.202 24 C -0.202 4.202 25 C -0.092 4.092 26 C -0.223 4.223 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.140 0.860 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.260 -2.109 23.951 24.418 hybrid contribution 1.002 -0.074 -0.651 1.198 sum -3.258 -2.184 23.300 23.628 Atomic orbital electron populations 1.22220 0.96705 1.01516 1.02337 1.21455 0.93590 0.84057 1.02862 1.48233 1.63346 1.13340 1.07607 1.19294 0.96345 0.93659 0.78024 1.21425 0.96898 1.31920 1.06284 0.92466 1.24939 0.97894 0.94903 0.96404 1.69930 1.35723 1.33408 1.14300 0.86494 0.84636 0.77691 0.78600 1.20621 1.21071 1.19896 1.19950 0.78709 0.86800 0.84883 1.90683 1.46151 1.18126 1.87315 1.21567 1.04427 0.99961 0.92034 1.22497 1.02119 0.95163 0.80123 1.85971 1.82542 1.41892 1.12878 1.19016 0.95090 0.90646 0.86499 1.20398 1.06170 1.01079 0.89578 1.20805 0.98006 0.93625 0.97478 1.19730 1.02992 0.94792 0.94660 1.20034 0.95755 0.96278 0.94866 1.21872 0.99614 0.96958 1.01781 1.21871 0.95173 1.01406 1.01786 1.20767 0.97747 0.99386 0.91256 1.21405 1.06169 0.94612 1.00071 0.92038 0.92083 0.93013 0.89853 0.91525 0.94903 0.93846 0.92698 0.88380 0.88489 0.91118 0.90993 0.85337 0.85709 0.90703 0.92558 0.92567 0.92441 0.92567 0.92536 0.92442 0.85984 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.29 2.46 -175.06 -0.43 -12.72 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 10.33 7.67 -10.98 -0.08 10.24 16 14 O -0.54 -13.31 15.56 5.56 0.09 -13.22 16 15 C -0.14 -2.07 4.62 -27.88 -0.13 -2.19 16 16 C 0.08 1.12 4.03 37.16 0.15 1.27 16 17 O -0.32 -4.47 10.14 -19.44 -0.20 -4.67 16 18 C 0.13 1.75 6.69 -39.22 -0.26 1.49 16 19 C -0.15 -1.73 9.99 -39.43 -0.39 -2.12 16 20 C -0.08 -0.79 9.66 -39.61 -0.38 -1.17 16 21 C -0.12 -1.19 4.78 -104.60 -0.50 -1.69 16 22 C -0.05 -0.39 3.09 -91.77 -0.28 -0.67 16 23 C -0.14 -1.02 9.00 37.16 0.33 -0.69 16 24 C -0.15 -1.04 9.01 37.16 0.33 -0.70 16 25 C -0.07 -0.80 8.70 -39.60 -0.34 -1.14 16 26 C -0.20 -2.57 9.04 -39.44 -0.36 -2.93 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.65 7.22 -51.93 -0.38 0.27 16 30 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.10 1.31 7.40 -51.93 -0.38 0.93 16 36 H 0.10 1.24 7.19 -51.93 -0.37 0.86 16 37 H 0.07 1.05 7.62 -51.93 -0.40 0.66 16 38 H 0.07 1.11 7.62 -51.93 -0.40 0.72 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.12 0.91 7.94 -52.49 -0.42 0.49 16 41 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.42 7.37 -51.93 -0.38 0.04 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.43 7.40 -51.93 -0.38 0.04 16 48 H 0.12 1.15 7.09 -52.49 -0.37 0.77 16 49 H 0.13 1.69 6.30 -52.48 -0.33 1.36 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -32.53 398.82 -9.11 -41.63 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.28 Total: -0.32 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.01 Total: -7.75 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.31 Total: -38.48 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.11 Total: -17.89 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.53 -9.11 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343875335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.500 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds