Wall clock time and date at job start Tue Mar 31 2020 12:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46496 * 109.47210 * 2 1 4 4 C 1.46497 * 120.00200 * 270.00246 * 3 2 1 5 5 C 1.50707 * 109.47202 * 270.00026 * 4 3 2 6 6 H 1.07999 * 119.99508 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00285 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99964 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00199 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46766 * 90.00084 * 9 7 5 11 11 H 1.48501 * 109.47314 * 210.00240 * 9 7 5 12 12 H 1.48494 * 109.46987 * 330.00597 * 9 7 5 13 13 C 1.34778 * 120.00131 * 90.00026 * 3 2 1 14 14 O 1.21280 * 120.00319 * 179.97438 * 13 3 2 15 15 C 1.50706 * 119.99488 * 0.02562 * 13 3 2 16 16 C 1.53001 * 109.46640 * 179.97438 * 15 13 3 17 17 O 1.42902 * 109.46925 * 180.02562 * 16 15 13 18 18 C 1.35905 * 116.99941 * 180.02562 * 17 16 15 19 19 C 1.38738 * 120.05455 * 179.97438 * 18 17 16 20 20 C 1.38139 * 119.94262 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.05734 * 0.02562 * 20 19 18 22 22 C 1.50699 * 119.94544 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47083 * 239.99774 * 22 21 20 24 24 C 1.52997 * 109.47078 * 119.99901 * 22 21 20 25 25 C 1.38274 * 120.11129 * 0.25057 * 21 20 19 26 26 C 1.38140 * 120.05195 * 359.45387 * 25 21 20 27 27 H 1.09001 * 109.47329 * 59.99751 * 1 2 3 28 28 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46752 * 299.99833 * 1 2 3 30 30 H 1.09000 * 109.46752 * 240.00167 * 2 1 3 31 31 H 1.08996 * 109.46889 * 120.00094 * 2 1 3 32 32 H 1.09001 * 109.47337 * 29.99763 * 4 3 2 33 33 H 1.08993 * 109.47322 * 150.00240 * 4 3 2 34 34 H 0.97002 * 120.00614 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47325 * 59.99912 * 15 13 3 36 36 H 1.08993 * 109.47420 * 299.99612 * 15 13 3 37 37 H 1.08994 * 109.47430 * 59.99670 * 16 15 13 38 38 H 1.09006 * 109.47273 * 299.99802 * 16 15 13 39 39 H 1.07997 * 120.02456 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.97261 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46959 * 359.97438 * 22 21 20 42 42 H 1.09004 * 109.46724 * 60.00424 * 23 22 21 43 43 H 1.09001 * 109.47194 * 179.97438 * 23 22 21 44 44 H 1.08992 * 109.47399 * 299.99938 * 23 22 21 45 45 H 1.08998 * 109.47533 * 179.97438 * 24 22 21 46 46 H 1.08996 * 109.47853 * 300.00179 * 24 22 21 47 47 H 1.09002 * 109.47153 * 60.00207 * 24 22 21 48 48 H 1.08000 * 119.96815 * 179.70256 * 25 21 20 49 49 H 1.08005 * 120.02747 * 180.24921 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3491 3.1257 -3.6180 9 14 5.9136 2.0967 -3.4169 10 1 5.9775 0.8753 -4.2592 11 1 6.3922 3.2639 -4.2003 12 1 6.7736 1.9178 -2.2197 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9924 1.3058 2.4723 16 6 2.3243 2.2431 3.6352 17 8 2.0872 1.5690 4.8728 18 6 2.3340 2.2668 6.0126 19 6 2.1249 1.6739 7.2493 20 6 2.3760 2.3855 8.4064 21 6 2.8348 3.6878 8.3327 22 6 3.1074 4.4619 9.5966 23 6 2.2224 5.7096 9.6313 24 6 4.5789 4.8793 9.6317 25 6 3.0385 4.2829 7.1013 26 6 2.7947 3.5735 5.9413 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 3.6749 3.5157 -4.4443 35 1 2.6229 0.4185 2.5298 36 1 0.9446 1.0113 2.5303 37 1 1.6942 3.1306 3.5779 38 1 3.3723 2.5372 3.5771 39 1 1.7662 0.6569 7.3073 40 1 2.2139 1.9243 9.3694 41 1 2.8862 3.8358 10.4610 42 1 1.1740 5.4121 9.6064 43 1 2.4192 6.2693 10.5457 44 1 2.4431 6.3358 8.7670 45 1 4.7760 5.4397 10.5456 46 1 5.2094 3.9906 9.6069 47 1 4.7996 5.5056 8.7673 48 1 3.3923 5.3018 7.0465 49 1 2.9578 4.0374 4.9797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343875335.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:42 Heat of formation + Delta-G solvation = -89.494231 kcal Electronic energy + Delta-G solvation = -26132.129480 eV Core-core repulsion = 22444.017521 eV Total energy + Delta-G solvation = -3688.111960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.33552 -40.70994 -39.07423 -37.03936 -35.75194 -34.96208 -33.05538 -31.95258 -31.55363 -29.83360 -29.00388 -27.94887 -26.13803 -24.65354 -24.26369 -23.89548 -22.58609 -20.92684 -19.99825 -19.23890 -18.62168 -17.86044 -17.45648 -17.14935 -16.96524 -16.37540 -16.22930 -15.92098 -15.36128 -15.18997 -14.72885 -14.68473 -14.46911 -14.44382 -14.32240 -14.16460 -13.78431 -13.60456 -13.54104 -13.26440 -13.15402 -13.07682 -12.78962 -12.70569 -12.67074 -12.43590 -12.19174 -12.08145 -12.02097 -11.85717 -11.73347 -11.66643 -11.58314 -11.43657 -10.71344 -10.65629 -9.95253 -9.48669 -9.03066 -8.24127 -6.38851 0.39144 0.45340 1.35203 1.38151 1.48287 1.73987 1.84622 2.35256 2.61093 2.79036 3.05571 3.58695 3.78838 3.80976 3.87697 3.91886 3.96587 4.12756 4.17421 4.32813 4.36590 4.41251 4.43994 4.50186 4.58817 4.59404 4.66612 4.72782 4.81922 4.83027 4.95720 4.98268 4.98752 5.02533 5.05103 5.11157 5.13594 5.20817 5.35581 5.38517 5.40013 5.41536 5.47166 5.55938 5.74361 5.82510 5.85376 6.04335 6.38710 6.66686 6.74941 7.24904 7.41058 8.83060 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016649 B = 0.002333 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.415499 B =11997.015926 C =13026.608123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.261 3.739 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.502 3.498 14 O -0.598 6.598 15 C -0.122 4.122 16 C 0.085 3.915 17 O -0.320 6.320 18 C 0.105 3.895 19 C -0.156 4.156 20 C -0.079 4.079 21 C -0.118 4.118 22 C -0.049 4.049 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.082 4.082 26 C -0.221 4.221 27 H 0.038 0.962 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.024 0.976 33 H -0.003 1.003 34 H 0.267 0.733 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.131 0.869 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -4.631 26.744 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.480 6.480 15 C -0.161 4.161 16 C 0.010 3.990 17 O -0.234 6.234 18 C 0.060 3.940 19 C -0.174 4.174 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.202 4.202 24 C -0.202 4.202 25 C -0.100 4.100 26 C -0.240 4.240 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.015 0.985 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.148 0.852 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.089 -4.159 26.514 27.148 hybrid contribution 0.908 0.587 -1.347 1.727 sum -3.181 -3.572 25.167 25.617 Atomic orbital electron populations 1.22160 0.94523 1.03602 1.01714 1.21805 0.95371 0.81128 1.04195 1.48254 1.63445 1.15219 1.06088 1.18731 0.95377 0.91570 0.80337 1.21703 0.97861 1.31989 1.06540 0.92817 1.25869 1.02430 0.94480 0.96470 1.70050 1.37806 1.34190 1.14769 0.85412 0.78956 0.78217 0.78209 1.18744 1.20661 1.19802 1.20888 0.77321 0.86359 0.86383 1.90653 1.48443 1.20713 1.88212 1.21437 1.06699 0.99641 0.88330 1.22244 1.00936 0.94948 0.80914 1.85922 1.82999 1.41784 1.12697 1.19308 0.96832 0.91086 0.86808 1.20682 1.05692 1.01900 0.89123 1.21194 0.96757 0.93428 0.98306 1.20072 1.01555 0.95117 0.95076 1.20100 0.96057 0.96464 0.94140 1.21869 0.99290 0.96771 1.02253 1.21870 0.94782 1.01310 1.02253 1.20942 0.97880 0.99859 0.91357 1.21429 1.07305 0.95056 1.00214 0.94293 0.88552 0.92050 0.90814 0.87876 0.95826 0.98468 0.92395 0.85943 0.85502 0.92195 0.92642 0.83798 0.82633 0.89033 0.92845 0.91085 0.93162 0.91070 0.92917 0.93192 0.85157 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.10 2.89 5.93 86.38 0.51 3.40 16 3 N -0.60 -25.22 2.46 -826.16 -2.03 -27.24 16 4 C 0.26 14.15 5.16 85.64 0.44 14.59 16 5 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 9 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.50 20.69 7.67 87.66 0.67 21.36 16 14 O -0.60 -30.85 15.56 -3.03 -0.05 -30.90 16 15 C -0.12 -3.43 4.62 29.85 0.14 -3.30 16 16 C 0.09 2.54 4.03 71.98 0.29 2.83 16 17 O -0.32 -8.77 10.14 -92.48 -0.94 -9.70 16 18 C 0.10 2.72 6.69 22.51 0.15 2.87 16 19 C -0.16 -3.23 9.99 22.37 0.22 -3.00 16 20 C -0.08 -1.35 9.66 22.25 0.22 -1.13 16 21 C -0.12 -2.12 4.78 -19.85 -0.09 -2.21 16 22 C -0.05 -0.63 3.09 -11.54 -0.04 -0.67 16 23 C -0.14 -1.76 9.00 71.98 0.65 -1.11 16 24 C -0.14 -1.80 9.01 71.98 0.65 -1.15 16 25 C -0.08 -1.78 8.70 22.26 0.19 -1.59 16 26 C -0.22 -5.77 9.04 22.36 0.20 -5.56 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.37 7.22 -2.39 -0.02 1.36 16 30 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 31 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 32 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 33 H 0.00 -0.18 7.42 -2.39 -0.02 -0.19 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.12 2.92 7.40 -2.39 -0.02 2.90 16 36 H 0.13 2.87 7.19 -2.39 -0.02 2.85 16 37 H 0.06 1.88 7.62 -2.39 -0.02 1.86 16 38 H 0.06 1.81 7.62 -2.38 -0.02 1.79 16 39 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.16 1.66 7.94 -2.91 -0.02 1.63 16 41 H 0.09 0.91 7.87 -2.39 -0.02 0.89 16 42 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 0.68 7.37 -2.39 -0.02 0.66 16 45 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 0.69 7.40 -2.39 -0.02 0.67 16 48 H 0.13 2.48 7.09 -2.91 -0.02 2.46 16 49 H 0.12 3.31 6.30 -2.91 -0.02 3.29 16 Total: -1.00 -74.32 398.82 5.85 -68.46 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.91 Total: 16.62 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 5.64 Total: -8.19 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -1.74 Total: -83.48 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.98 Total: -40.60 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -74.32 5.85 -68.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343875335.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.032 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds