Wall clock time and date at job start Tue Mar 31 2020 13:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00150 * 2 1 4 4 C 1.50696 * 109.46751 * 72.02927 * 3 2 1 5 5 C 1.38288 * 119.97543 * 90.00158 * 4 3 2 6 6 C 1.38245 * 120.11689 * 179.97438 * 5 4 3 7 7 C 1.38164 * 120.05232 * 0.02562 * 6 5 4 8 8 C 1.38717 * 119.94638 * 359.97438 * 7 6 5 9 9 O 1.35898 * 120.05529 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00088 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.46762 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46662 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99884 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99681 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 119.99794 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47486 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47340 * 119.99922 * 16 14 12 19 19 H 1.48506 * 109.47047 * 239.99843 * 16 14 12 20 20 C 1.38120 * 119.97218 * 269.72089 * 4 3 2 21 21 C 1.46906 * 110.99745 * 236.04545 * 2 1 3 22 22 H 1.08996 * 110.01456 * 75.73994 * 21 2 1 23 23 C 1.54259 * 110.03619 * 314.34635 * 21 2 1 24 24 C 1.54888 * 104.19881 * 217.10656 * 23 21 2 25 25 C 1.54892 * 102.74963 * 37.93582 * 24 23 21 26 26 C 1.53877 * 110.03093 * 197.17401 * 21 2 1 27 27 H 1.09001 * 110.03508 * 238.57194 * 26 21 2 28 28 O 1.42896 * 110.03414 * 0.02562 * 26 21 2 29 29 H 1.09010 * 109.47117 * 189.45935 * 1 2 3 30 30 H 1.09004 * 109.46820 * 309.45741 * 1 2 3 31 31 H 1.08997 * 109.47302 * 69.45646 * 1 2 3 32 32 H 1.09005 * 109.47185 * 192.02740 * 3 2 1 33 33 H 1.08999 * 109.46869 * 312.03052 * 3 2 1 34 34 H 1.08003 * 119.93959 * 359.97438 * 5 4 3 35 35 H 1.07995 * 119.97101 * 179.97438 * 6 5 4 36 36 H 1.08003 * 120.02974 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.46993 * 300.00214 * 10 9 8 38 38 H 1.08997 * 109.46745 * 60.00715 * 10 9 8 39 39 H 1.08995 * 109.47507 * 299.99857 * 11 10 9 40 40 H 1.09005 * 109.46974 * 60.00513 * 11 10 9 41 41 H 0.97006 * 120.00129 * 180.02562 * 15 14 12 42 42 H 1.07999 * 120.02681 * 0.02562 * 20 4 3 43 43 H 1.08993 * 110.49129 * 98.42359 * 23 21 2 44 44 H 1.09008 * 110.59674 * 335.83477 * 23 21 2 45 45 H 1.09003 * 110.75361 * 279.63156 * 24 23 21 46 46 H 1.08997 * 110.76072 * 156.25539 * 24 23 21 47 47 H 1.09005 * 110.48504 * 80.73651 * 25 24 23 48 48 H 1.08990 * 110.49247 * 203.38167 * 25 24 23 49 49 H 0.96703 * 114.00420 * 178.62394 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7662 1.9974 1.3515 5 6 2.7249 1.8760 2.3407 6 6 2.5178 2.4496 3.5814 7 6 1.3516 3.1453 3.8362 8 6 0.3884 3.2685 2.8456 9 8 -0.7593 3.9528 3.0936 10 6 -0.9081 4.5193 4.3971 11 6 -2.2522 5.2447 4.4874 12 6 -2.4088 5.8427 5.8619 13 1 -1.6277 5.7181 6.5972 14 6 -3.5494 6.5487 6.1805 15 7 -4.5008 6.6999 5.2852 16 14 -3.7433 7.2905 7.8839 17 1 -2.5415 6.9797 8.6989 18 1 -3.8961 8.7630 7.7681 19 1 -4.9467 6.7179 8.5390 20 6 0.6013 2.6968 1.5993 21 6 1.9954 -0.7660 -1.1376 22 1 1.8935 -0.1877 -2.0559 23 6 1.2390 -2.1040 -1.2692 24 6 2.3284 -3.1150 -1.7052 25 6 3.5641 -2.6586 -0.8904 26 6 3.4737 -1.1185 -0.8968 27 1 4.0900 -0.7117 -1.6986 28 8 3.9021 -0.5982 0.3632 29 1 -0.3634 -1.0138 0.1689 30 1 -0.3633 0.6531 0.7935 31 1 -0.3634 0.3606 -0.9623 32 1 3.0640 1.3504 -0.2142 33 1 1.4833 1.9572 -0.7633 34 1 3.6370 1.3322 2.1436 35 1 3.2679 2.3530 4.3524 36 1 1.1901 3.5929 4.8057 37 1 -0.8726 3.7263 5.1441 38 1 -0.0998 5.2272 4.5799 39 1 -2.2881 6.0376 3.7404 40 1 -3.0603 4.5364 4.3047 41 1 -5.3031 7.1970 5.5093 42 1 -0.1454 2.7948 0.8251 43 1 0.4614 -2.0296 -2.0293 44 1 0.8083 -2.3968 -0.3115 45 1 2.5213 -3.0375 -2.7752 46 1 2.0421 -4.1316 -1.4358 47 1 3.5106 -3.0395 0.1295 48 1 4.4833 -2.9887 -1.3742 49 1 4.8208 -0.8056 0.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348561705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:41 Heat of formation + Delta-G solvation = -65.822930 kcal Electronic energy + Delta-G solvation = -26636.237261 eV Core-core repulsion = 22949.151766 eV Total energy + Delta-G solvation = -3687.085495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.03661 -39.38736 -37.36312 -35.96841 -34.85699 -33.34173 -31.29241 -30.69294 -29.12277 -28.27425 -27.99107 -26.61881 -25.00208 -23.47720 -22.17779 -21.47178 -21.10498 -19.99008 -19.80499 -17.78160 -17.46934 -16.34975 -16.08845 -15.69214 -15.52891 -15.42365 -15.19193 -14.85794 -14.68242 -14.46042 -14.07749 -13.91146 -13.40744 -12.87724 -12.78768 -12.63793 -12.49808 -12.29576 -12.26217 -12.00311 -11.63035 -11.57501 -11.35631 -11.28301 -11.16071 -11.06870 -10.96981 -10.84972 -10.70594 -10.61269 -10.33353 -10.09563 -9.78994 -9.61834 -9.25459 -8.60689 -8.42994 -8.25537 -7.68489 -6.08352 -4.12613 1.58942 1.86558 3.27977 3.34957 3.38883 3.63931 3.92921 4.05742 4.14186 4.24373 4.33291 4.43699 4.70709 4.89862 4.92278 5.02329 5.05631 5.13390 5.23537 5.27754 5.28092 5.31646 5.37485 5.48371 5.49827 5.56560 5.60267 5.68181 5.71528 5.74213 5.78202 5.85116 5.91758 5.97121 6.04402 6.09659 6.15534 6.33708 6.64725 6.71580 6.83567 6.88704 6.97307 7.06015 7.16583 7.54270 7.55202 7.67586 7.85704 8.14240 8.27284 8.93272 9.51535 11.03307 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.002143 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.944718 B =13061.333615 C =13634.342490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.508 5.508 3 C 0.104 3.896 4 C -0.037 4.037 5 C -0.139 4.139 6 C -0.086 4.086 7 C -0.213 4.213 8 C 0.141 3.859 9 O -0.318 6.318 10 C 0.066 3.934 11 C 0.025 3.975 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.160 4.160 21 C 0.086 3.914 22 H 0.048 0.952 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.155 4.155 26 C 0.108 3.892 27 H 0.052 0.948 28 O -0.535 6.535 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.021 0.979 32 H 0.091 0.909 33 H 0.033 0.967 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.027 0.973 41 H 0.262 0.738 42 H 0.121 0.879 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.372 -18.837 -15.238 30.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.231 5.231 3 C -0.023 4.023 4 C -0.038 4.038 5 C -0.158 4.158 6 C -0.104 4.104 7 C -0.232 4.232 8 C 0.094 3.906 9 O -0.232 6.232 10 C -0.008 4.008 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.179 4.179 21 C -0.023 4.023 22 H 0.065 0.935 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.193 4.193 26 C 0.049 3.951 27 H 0.070 0.930 28 O -0.338 6.338 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 17.550 -18.708 -14.951 29.690 hybrid contribution 0.142 0.635 0.361 0.744 sum 17.692 -18.073 -14.590 29.197 Atomic orbital electron populations 1.22601 0.87603 1.02721 1.00647 1.61881 1.07056 1.13007 1.41195 1.20990 1.00931 0.87417 0.92990 1.19329 0.93257 0.95732 0.95468 1.20787 1.00067 1.01967 0.92975 1.20896 0.96325 0.96382 0.96800 1.21350 0.95893 1.05893 1.00044 1.19124 0.86308 0.91518 0.93603 1.86154 1.34949 1.65456 1.36614 1.23289 1.01912 0.95824 0.79753 1.19128 0.89044 0.95355 0.97703 1.21021 1.03654 1.34214 0.97387 0.92313 1.24999 0.95687 0.96116 0.97490 1.69990 1.07802 1.41010 1.34004 0.86430 0.78160 0.78883 0.83907 1.19632 1.20859 1.20851 1.20291 0.98802 1.03122 0.95695 1.22368 0.93137 0.94735 0.92077 0.93459 1.22555 0.97555 0.93595 1.02264 1.22373 0.95070 0.99051 0.99511 1.23103 0.98337 0.96314 1.01551 1.22428 0.94369 0.92142 0.86211 0.93038 1.86813 1.32031 1.78166 1.36761 0.91291 0.90360 0.95997 0.89112 0.94865 0.85969 0.86454 0.85538 0.93227 0.93240 0.95451 0.95434 0.92794 0.86091 0.91535 0.89865 0.91513 0.91174 0.90221 0.91718 0.78881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.77 60.06 0.53 0.66 16 2 N -0.51 -5.62 3.93 -234.98 -0.92 -6.54 16 3 C 0.10 1.21 4.47 -4.98 -0.02 1.19 16 4 C -0.04 -0.52 5.06 -104.65 -0.53 -1.05 16 5 C -0.14 -1.90 9.70 -39.56 -0.38 -2.28 16 6 C -0.09 -1.23 10.04 -39.61 -0.40 -1.62 16 7 C -0.21 -3.57 9.04 -39.43 -0.36 -3.93 16 8 C 0.14 2.61 6.69 -39.21 -0.26 2.35 16 9 O -0.32 -6.86 10.14 -19.42 -0.20 -7.06 16 10 C 0.07 1.48 4.68 37.16 0.17 1.65 16 11 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 12 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.16 -2.59 8.04 -39.43 -0.32 -2.91 16 21 C 0.09 0.75 2.71 -66.59 -0.18 0.57 16 22 H 0.05 0.41 8.07 -51.93 -0.42 -0.01 16 23 C -0.12 -0.92 5.24 -25.08 -0.13 -1.05 16 24 C -0.12 -0.73 6.91 -24.74 -0.17 -0.90 16 25 C -0.16 -0.94 6.55 -25.07 -0.16 -1.11 16 26 C 0.11 0.79 3.87 -25.61 -0.10 0.69 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 O -0.53 -4.39 10.14 -35.23 -0.36 -4.75 16 29 H 0.07 0.70 6.37 -51.92 -0.33 0.37 16 30 H 0.08 1.02 5.71 -51.93 -0.30 0.73 16 31 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 32 H 0.09 0.99 6.21 -51.93 -0.32 0.67 16 33 H 0.03 0.38 7.99 -51.93 -0.42 -0.03 16 34 H 0.12 1.45 7.72 -52.48 -0.41 1.04 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.13 2.09 6.30 -52.48 -0.33 1.76 16 37 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 38 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.12 1.88 7.75 -52.49 -0.41 1.48 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.73 6.77 -51.92 -0.35 0.38 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.37 1.63 9.10 45.56 0.41 2.04 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -31.87 384.63 -10.26 -42.14 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.42 Total: 0.77 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -2.87 Total: -20.81 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: -0.19 Total: -32.61 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.55 Total: -11.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.87 -10.26 -42.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348561705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.686 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds