Wall clock time and date at job start Tue Mar 31 2020 13:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00150 * 2 1 4 4 C 1.50696 * 109.46751 * 72.02927 * 3 2 1 5 5 C 1.38288 * 119.97543 * 90.00158 * 4 3 2 6 6 C 1.38245 * 120.11689 * 179.97438 * 5 4 3 7 7 C 1.38164 * 120.05232 * 0.02562 * 6 5 4 8 8 C 1.38717 * 119.94638 * 359.97438 * 7 6 5 9 9 O 1.35898 * 120.05529 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00088 * 359.97438 * 9 8 7 11 11 C 1.53001 * 109.46762 * 180.02562 * 10 9 8 12 12 C 1.50708 * 109.46662 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99884 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99681 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99938 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 119.99794 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47486 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47340 * 119.99922 * 16 14 12 19 19 H 1.48506 * 109.47047 * 239.99843 * 16 14 12 20 20 C 1.38120 * 119.97218 * 269.72089 * 4 3 2 21 21 C 1.46906 * 110.99745 * 236.04545 * 2 1 3 22 22 H 1.08996 * 110.01456 * 75.73994 * 21 2 1 23 23 C 1.54259 * 110.03619 * 314.34635 * 21 2 1 24 24 C 1.54888 * 104.19881 * 217.10656 * 23 21 2 25 25 C 1.54892 * 102.74963 * 37.93582 * 24 23 21 26 26 C 1.53877 * 110.03093 * 197.17401 * 21 2 1 27 27 H 1.09001 * 110.03508 * 238.57194 * 26 21 2 28 28 O 1.42896 * 110.03414 * 0.02562 * 26 21 2 29 29 H 1.09010 * 109.47117 * 189.45935 * 1 2 3 30 30 H 1.09004 * 109.46820 * 309.45741 * 1 2 3 31 31 H 1.08997 * 109.47302 * 69.45646 * 1 2 3 32 32 H 1.09005 * 109.47185 * 192.02740 * 3 2 1 33 33 H 1.08999 * 109.46869 * 312.03052 * 3 2 1 34 34 H 1.08003 * 119.93959 * 359.97438 * 5 4 3 35 35 H 1.07995 * 119.97101 * 179.97438 * 6 5 4 36 36 H 1.08003 * 120.02974 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.46993 * 300.00214 * 10 9 8 38 38 H 1.08997 * 109.46745 * 60.00715 * 10 9 8 39 39 H 1.08995 * 109.47507 * 299.99857 * 11 10 9 40 40 H 1.09005 * 109.46974 * 60.00513 * 11 10 9 41 41 H 0.97006 * 120.00129 * 180.02562 * 15 14 12 42 42 H 1.07999 * 120.02681 * 0.02562 * 20 4 3 43 43 H 1.08993 * 110.49129 * 98.42359 * 23 21 2 44 44 H 1.09008 * 110.59674 * 335.83477 * 23 21 2 45 45 H 1.09003 * 110.75361 * 279.63156 * 24 23 21 46 46 H 1.08997 * 110.76072 * 156.25539 * 24 23 21 47 47 H 1.09005 * 110.48504 * 80.73651 * 25 24 23 48 48 H 1.08990 * 110.49247 * 203.38167 * 25 24 23 49 49 H 0.96703 * 114.00420 * 178.62394 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7662 1.9974 1.3515 5 6 2.7249 1.8760 2.3407 6 6 2.5178 2.4496 3.5814 7 6 1.3516 3.1453 3.8362 8 6 0.3884 3.2685 2.8456 9 8 -0.7593 3.9528 3.0936 10 6 -0.9081 4.5193 4.3971 11 6 -2.2522 5.2447 4.4874 12 6 -2.4088 5.8427 5.8619 13 1 -1.6277 5.7181 6.5972 14 6 -3.5494 6.5487 6.1805 15 7 -4.5008 6.6999 5.2852 16 14 -3.7433 7.2905 7.8839 17 1 -2.5415 6.9797 8.6989 18 1 -3.8961 8.7630 7.7681 19 1 -4.9467 6.7179 8.5390 20 6 0.6013 2.6968 1.5993 21 6 1.9954 -0.7660 -1.1376 22 1 1.8935 -0.1877 -2.0559 23 6 1.2390 -2.1040 -1.2692 24 6 2.3284 -3.1150 -1.7052 25 6 3.5641 -2.6586 -0.8904 26 6 3.4737 -1.1185 -0.8968 27 1 4.0900 -0.7117 -1.6986 28 8 3.9021 -0.5982 0.3632 29 1 -0.3634 -1.0138 0.1689 30 1 -0.3633 0.6531 0.7935 31 1 -0.3634 0.3606 -0.9623 32 1 3.0640 1.3504 -0.2142 33 1 1.4833 1.9572 -0.7633 34 1 3.6370 1.3322 2.1436 35 1 3.2679 2.3530 4.3524 36 1 1.1901 3.5929 4.8057 37 1 -0.8726 3.7263 5.1441 38 1 -0.0998 5.2272 4.5799 39 1 -2.2881 6.0376 3.7404 40 1 -3.0603 4.5364 4.3047 41 1 -5.3031 7.1970 5.5093 42 1 -0.1454 2.7948 0.8251 43 1 0.4614 -2.0296 -2.0293 44 1 0.8083 -2.3968 -0.3115 45 1 2.5213 -3.0375 -2.7752 46 1 2.0421 -4.1316 -1.4358 47 1 3.5106 -3.0395 0.1295 48 1 4.4833 -2.9887 -1.3742 49 1 4.8208 -0.8056 0.5827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348561705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:40 Heat of formation + Delta-G solvation = -85.767053 kcal Electronic energy + Delta-G solvation = -26637.102103 eV Core-core repulsion = 22949.151766 eV Total energy + Delta-G solvation = -3687.950337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15653 -40.32029 -38.64670 -36.78207 -35.57474 -35.39709 -32.58552 -32.32655 -30.62389 -28.97038 -28.66179 -27.53895 -26.93196 -24.53367 -23.44842 -23.11699 -21.74405 -21.31867 -20.46426 -19.06414 -18.37278 -18.11480 -17.00039 -16.95743 -16.85662 -16.79980 -16.42395 -16.21462 -15.60252 -15.53399 -14.87528 -14.75252 -14.36718 -14.32872 -14.30698 -14.20126 -13.73179 -13.26194 -13.24312 -13.00322 -12.94535 -12.77730 -12.55826 -12.53359 -12.49431 -12.24079 -12.06257 -11.88612 -11.70885 -11.59489 -11.57131 -11.50820 -11.35965 -11.28102 -10.64092 -10.61243 -9.77592 -9.12238 -9.03275 -8.27929 -6.41702 0.39385 0.60545 1.40045 1.41279 1.54906 2.27364 2.51607 2.72165 3.06316 3.17622 3.55699 3.59900 3.76977 3.90936 3.94127 4.16015 4.20716 4.23630 4.25830 4.32401 4.39746 4.42626 4.44029 4.53676 4.54724 4.60388 4.62039 4.72249 4.73625 4.81178 4.84143 4.93880 5.01786 5.07243 5.13904 5.16957 5.18498 5.26080 5.31078 5.45057 5.46581 5.47689 5.58569 5.67373 5.75068 5.95140 6.07275 6.15181 6.23884 6.59698 6.73129 7.16155 7.28371 8.85515 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028920 B = 0.002143 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.944718 B =13061.333615 C =13634.342490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.515 5.515 3 C 0.109 3.891 4 C -0.034 4.034 5 C -0.129 4.129 6 C -0.082 4.082 7 C -0.224 4.224 8 C 0.104 3.896 9 O -0.344 6.344 10 C 0.086 3.914 11 C 0.028 3.972 12 C -0.545 4.545 13 H 0.070 0.930 14 C 0.000 4.000 15 N -0.931 5.931 16 Si 0.978 3.022 17 H -0.258 1.258 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.167 4.167 21 C 0.078 3.922 22 H 0.050 0.950 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.149 4.149 26 C 0.110 3.890 27 H 0.066 0.934 28 O -0.555 6.555 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.105 0.895 33 H 0.031 0.969 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.125 0.875 37 H 0.058 0.942 38 H 0.059 0.941 39 H -0.002 1.002 40 H -0.003 1.003 41 H 0.267 0.733 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.057 -20.088 -14.945 32.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.239 5.239 3 C -0.018 4.018 4 C -0.035 4.035 5 C -0.148 4.148 6 C -0.100 4.100 7 C -0.243 4.243 8 C 0.059 3.941 9 O -0.259 6.259 10 C 0.012 3.988 11 C -0.009 4.009 12 C -0.583 4.583 13 H 0.089 0.911 14 C -0.199 4.199 15 N -0.570 5.570 16 Si 0.801 3.199 17 H -0.181 1.181 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.186 4.186 21 C -0.030 4.030 22 H 0.068 0.932 23 C -0.159 4.159 24 C -0.157 4.157 25 C -0.187 4.187 26 C 0.050 3.950 27 H 0.084 0.916 28 O -0.361 6.361 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.123 0.877 33 H 0.049 0.951 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.143 0.857 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.076 0.924 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 20.270 -19.984 -14.671 32.023 hybrid contribution -0.622 0.923 0.144 1.122 sum 19.648 -19.061 -14.527 30.990 Atomic orbital electron populations 1.22536 0.88210 1.02568 1.00014 1.61871 1.06633 1.12628 1.42746 1.20961 1.01737 0.87728 0.91377 1.19636 0.92273 0.94669 0.96886 1.21145 1.00498 1.00810 0.92327 1.21248 0.95823 0.95025 0.97890 1.21463 0.96562 1.06687 0.99574 1.19449 0.86155 0.93254 0.95264 1.86068 1.37181 1.66722 1.35880 1.22832 0.99347 0.95897 0.80768 1.18970 0.90888 0.94196 0.96822 1.21422 1.04307 1.34512 0.98025 0.91135 1.26073 0.95144 0.96413 1.02238 1.70133 1.08519 1.41822 1.36571 0.85207 0.78639 0.77908 0.78118 1.18117 1.20154 1.20176 1.20412 0.99760 1.03485 0.94925 1.22550 0.94468 0.94777 0.91229 0.93227 1.22532 0.98156 0.93581 1.01649 1.22383 0.94348 0.98713 1.00219 1.23049 0.99128 0.95445 1.01071 1.22452 0.93314 0.92849 0.86395 0.91612 1.86735 1.33650 1.78507 1.37182 0.90576 0.92773 0.95455 0.87715 0.95079 0.83353 0.83318 0.85701 0.92426 0.92296 0.98368 0.98417 0.92423 0.86554 0.91113 0.91425 0.90304 0.90756 0.91381 0.89948 0.76966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 8.77 127.69 1.12 1.45 16 2 N -0.51 -10.81 3.93 -897.34 -3.53 -14.34 16 3 C 0.11 2.39 4.47 85.56 0.38 2.77 16 4 C -0.03 -0.92 5.06 -19.88 -0.10 -1.02 16 5 C -0.13 -3.21 9.70 22.28 0.22 -2.99 16 6 C -0.08 -2.16 10.04 22.25 0.22 -1.94 16 7 C -0.22 -7.43 9.04 22.37 0.20 -7.23 16 8 C 0.10 3.96 6.69 22.51 0.15 4.11 16 9 O -0.34 -15.61 10.14 -92.40 -0.94 -16.55 16 10 C 0.09 3.97 4.68 71.98 0.34 4.31 16 11 C 0.03 1.61 5.34 29.85 0.16 1.77 16 12 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 13 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 14 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 15 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 16 Si 0.98 44.26 29.54 68.60 2.03 46.29 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 20 C -0.17 -5.53 8.04 22.37 0.18 -5.35 16 21 C 0.08 1.22 2.71 45.64 0.12 1.35 16 22 H 0.05 0.76 8.07 -2.39 -0.02 0.74 16 23 C -0.12 -1.66 5.24 31.67 0.17 -1.49 16 24 C -0.12 -1.15 6.91 31.89 0.22 -0.93 16 25 C -0.15 -1.43 6.55 31.67 0.21 -1.22 16 26 C 0.11 1.30 3.87 31.32 0.12 1.42 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 O -0.55 -7.54 10.14 -148.98 -1.51 -9.05 16 29 H 0.08 1.56 6.37 -2.38 -0.02 1.54 16 30 H 0.05 1.47 5.71 -2.39 -0.01 1.46 16 31 H 0.03 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.10 2.02 6.21 -2.38 -0.01 2.01 16 33 H 0.03 0.69 7.99 -2.39 -0.02 0.67 16 34 H 0.15 2.94 7.72 -2.91 -0.02 2.92 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.13 4.10 6.30 -2.91 -0.02 4.08 16 37 H 0.06 2.53 7.66 -2.39 -0.02 2.51 16 38 H 0.06 2.57 7.66 -2.39 -0.02 2.55 16 39 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 41 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 42 H 0.12 3.84 7.75 -2.91 -0.02 3.82 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 1.14 6.77 -2.38 -0.02 1.12 16 45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 48 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.38 2.21 9.10 -74.05 -0.67 1.53 16 Total: -1.00 -70.51 384.63 1.00 -69.51 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.26 Total: 17.31 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.40 Total: -35.84 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -3.24 Total: -71.68 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -2.45 Total: -25.60 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.51 1.00 -69.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348561705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.253 kcal (2) G-P(sol) polarization free energy of solvation -70.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds