Wall clock time and date at job start Tue Mar 31 2020 13:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46802 * 2 1 4 4 C 1.42902 * 114.00197 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47299 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47392 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47356 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47121 * 179.97438 * 7 6 5 9 9 C 1.34769 * 119.99929 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00091 * 0.02562 * 9 8 7 11 11 C 1.50703 * 120.00156 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47348 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47385 * 53.81101 * 12 11 9 14 14 C 1.50707 * 109.46800 * 293.80633 * 12 11 9 15 15 H 1.07996 * 119.99939 * 324.79144 * 14 12 11 16 16 C 1.37876 * 119.99516 * 144.79724 * 14 12 11 17 17 N 1.31517 * 119.99498 * 181.40280 * 16 14 12 18 18 Si 1.86799 * 120.00347 * 1.40222 * 16 14 12 19 19 H 1.48496 * 109.47059 * 267.09616 * 18 16 14 20 20 H 1.48498 * 109.46945 * 27.10055 * 18 16 14 21 21 H 1.48502 * 109.46861 * 147.09689 * 18 16 14 22 22 C 1.50699 * 109.46966 * 173.80920 * 12 11 9 23 23 C 1.38237 * 120.00135 * 66.64777 * 22 12 11 24 24 C 1.38237 * 120.00124 * 179.80917 * 23 22 12 25 25 C 1.38241 * 119.99834 * 0.39586 * 24 23 22 26 26 C 1.38239 * 119.99727 * 359.85702 * 25 24 23 27 27 C 1.38229 * 120.00171 * 359.95425 * 26 25 24 28 28 H 1.08995 * 109.47512 * 299.99952 * 1 2 3 29 29 H 1.09001 * 109.47053 * 60.00497 * 1 2 3 30 30 H 1.09007 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47512 * 240.00048 * 2 1 3 32 32 H 1.09001 * 109.47053 * 119.99503 * 2 1 3 33 33 H 1.08999 * 109.46693 * 60.00384 * 4 3 2 34 34 H 1.08996 * 109.47294 * 300.00087 * 4 3 2 35 35 H 1.09004 * 109.46991 * 60.00185 * 5 4 3 36 36 H 1.09002 * 109.47337 * 300.00721 * 5 4 3 37 37 H 1.09004 * 109.46707 * 59.99678 * 6 5 4 38 38 H 1.09003 * 109.46778 * 300.00789 * 6 5 4 39 39 H 1.08999 * 109.47126 * 60.00134 * 7 6 5 40 40 H 1.09003 * 109.46688 * 299.99513 * 7 6 5 41 41 H 0.97005 * 119.99423 * 0.02562 * 8 7 6 42 42 H 1.09004 * 109.46561 * 60.00018 * 11 9 8 43 43 H 1.09003 * 109.46933 * 300.01124 * 11 9 8 44 44 H 0.96996 * 119.99967 * 179.97438 * 17 16 14 45 45 H 1.07999 * 120.00352 * 359.97438 * 23 22 12 46 46 H 1.07995 * 120.00255 * 180.23001 * 24 23 22 47 47 H 1.07995 * 119.99860 * 179.82910 * 25 24 23 48 48 H 1.08003 * 119.99758 * 179.97438 * 26 25 24 49 49 H 1.08004 * 119.99873 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8252 2.9385 -0.0001 6 6 5.3504 3.0595 -0.0001 7 6 5.7448 4.5377 -0.0002 8 7 7.2053 4.6535 0.0004 9 6 7.7848 5.8702 0.0000 10 8 7.0973 6.8694 -0.0005 11 6 9.2871 5.9894 0.0011 12 6 9.6815 7.4676 0.0010 13 1 9.1882 7.9754 0.8297 14 6 9.2579 8.1003 -1.2996 15 1 9.2981 7.5301 -2.2158 16 6 8.8191 9.4073 -1.3196 17 7 8.4234 9.9507 -2.4500 18 14 8.7868 10.4060 0.2586 19 1 7.4472 10.2919 0.8892 20 1 9.8193 9.8894 1.1925 21 1 9.0682 11.8308 -0.0514 22 6 11.1756 7.5889 0.1554 23 6 12.0130 7.1408 -0.8491 24 6 13.3834 7.2556 -0.7092 25 6 13.9169 7.8111 0.4388 26 6 13.0796 8.2544 1.4456 27 6 11.7091 8.1431 1.3039 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8339 0.9767 -0.8892 34 1 3.8332 0.9769 0.8908 35 1 3.4220 3.4225 0.8894 36 1 3.4227 3.4216 -0.8905 37 1 5.7532 2.5755 -0.8899 38 1 5.7532 2.5763 0.8901 39 1 5.3421 5.0213 0.8898 40 1 5.3420 5.0211 -0.8903 41 1 7.7551 3.8543 0.0004 42 1 9.6906 5.5052 -0.8882 43 1 9.6891 5.5064 0.8918 44 1 8.1143 10.8700 -2.4641 45 1 11.5964 6.7034 -1.7444 46 1 14.0375 6.9089 -1.4955 47 1 14.9876 7.8982 0.5494 48 1 13.4964 8.6880 2.3427 49 1 11.0550 8.4899 2.0903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354720740.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:20 Heat of formation + Delta-G solvation = -105.157239 kcal Electronic energy + Delta-G solvation = -25825.207496 eV Core-core repulsion = 22136.416337 eV Total energy + Delta-G solvation = -3688.791159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75305 -39.80790 -39.11468 -36.91468 -35.77670 -34.31474 -33.68314 -32.03716 -31.58204 -30.57046 -28.97557 -27.45847 -24.63117 -23.75322 -23.63204 -23.22223 -22.28796 -21.56199 -20.66283 -19.00001 -18.05010 -17.55086 -17.42804 -17.15254 -16.89132 -16.60110 -16.32873 -15.87946 -15.50378 -15.41960 -15.23324 -14.80432 -14.55644 -14.39331 -14.13073 -13.88815 -13.63199 -13.54381 -13.28301 -13.20478 -13.14230 -12.86919 -12.66695 -12.63501 -12.25037 -12.21545 -12.02979 -11.88296 -11.81920 -11.77510 -11.63076 -11.47775 -11.03496 -10.71498 -10.53617 -10.50024 -9.93248 -9.59237 -9.27970 -8.21337 -6.18006 0.70500 0.75281 1.32033 1.37419 1.42433 1.95172 2.32633 2.42252 2.81207 3.10416 3.25499 3.86035 3.94075 4.10289 4.16020 4.16447 4.25106 4.31070 4.32338 4.33274 4.34310 4.46973 4.47855 4.49348 4.51381 4.60000 4.67331 4.72775 4.81458 4.87532 4.88886 4.89136 4.97777 5.02542 5.13412 5.22139 5.25278 5.26000 5.31636 5.40364 5.43247 5.63768 5.70860 5.79133 5.85136 6.04974 6.30410 6.34929 6.38423 6.79611 6.81726 7.46286 7.58411 8.95748 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.002267 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.068149 B =12345.784978 C =13329.380375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.419 6.419 4 C 0.064 3.936 5 C -0.115 4.115 6 C -0.109 4.109 7 C 0.120 3.880 8 N -0.726 5.726 9 C 0.507 3.493 10 O -0.566 6.566 11 C -0.112 4.112 12 C 0.056 3.944 13 H 0.032 0.968 14 C -0.462 4.462 15 H 0.034 0.966 16 C 0.019 3.981 17 N -0.955 5.955 18 Si 0.920 3.080 19 H -0.292 1.292 20 H -0.222 1.222 21 H -0.297 1.297 22 C -0.064 4.064 23 C -0.117 4.117 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.125 4.125 27 C -0.151 4.151 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.039 0.961 41 H 0.415 0.585 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.257 0.743 45 H 0.109 0.891 46 H 0.138 0.862 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -22.168 8.953 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.340 6.340 4 C -0.012 4.012 5 C -0.154 4.154 6 C -0.146 4.146 7 C -0.004 4.004 8 N -0.381 5.381 9 C 0.294 3.706 10 O -0.443 6.443 11 C -0.152 4.152 12 C 0.036 3.964 13 H 0.050 0.950 14 C -0.500 4.500 15 H 0.053 0.947 16 C -0.177 4.177 17 N -0.597 5.597 18 Si 0.747 3.253 19 H -0.219 1.219 20 H -0.145 1.145 21 H -0.224 1.224 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.157 4.157 26 C -0.143 4.143 27 C -0.169 4.169 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.252 0.748 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.156 0.844 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.065 -21.145 8.886 23.029 hybrid contribution -0.397 0.719 -0.030 0.822 sum -2.463 -20.427 8.856 22.400 Atomic orbital electron populations 1.21784 0.93308 1.03348 1.02500 1.22649 0.96141 0.82875 1.00980 1.87860 1.22322 1.28162 1.95645 1.22528 0.80556 0.96758 1.01351 1.21374 0.95172 0.95814 1.03004 1.21546 0.95102 0.93444 1.04545 1.21240 0.80493 0.98024 1.00662 1.45882 1.07489 1.08089 1.76682 1.21121 0.91730 0.82871 0.74837 1.90730 1.66130 1.38342 1.49143 1.21593 0.90569 0.98708 1.04295 1.18021 0.88954 0.93249 0.96149 0.95003 1.20825 1.39843 0.96554 0.92806 0.94737 1.25653 0.94570 0.99296 0.98143 1.70033 1.47134 1.14433 1.28095 0.86155 0.79140 0.77444 0.82580 1.21927 1.14477 1.22414 1.20487 0.96565 0.95917 0.93453 1.21008 0.93736 1.00746 0.98066 1.21394 0.94560 0.99856 0.98575 1.21333 1.00567 0.99981 0.93857 1.21332 0.92726 1.00128 1.00094 1.21254 0.96148 1.01774 0.97735 0.92476 0.92616 0.89056 0.92531 0.92322 0.92217 0.91810 0.91521 0.92088 0.89675 0.88962 0.93069 0.94240 0.74835 0.88557 0.87476 0.93413 0.87320 0.84384 0.83639 0.84255 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.42 -8.31 10.34 -148.98 -1.54 -9.85 16 4 C 0.06 0.99 5.94 71.98 0.43 1.42 16 5 C -0.12 -2.07 5.58 30.59 0.17 -1.90 16 6 C -0.11 -1.78 5.33 30.59 0.16 -1.61 16 7 C 0.12 3.19 5.67 86.38 0.49 3.68 16 8 N -0.73 -20.29 5.56 -463.06 -2.57 -22.86 16 9 C 0.51 20.04 7.58 87.66 0.66 20.70 16 10 O -0.57 -29.52 15.02 -3.04 -0.05 -29.56 16 11 C -0.11 -4.05 4.96 29.85 0.15 -3.90 16 12 C 0.06 2.55 1.17 -12.29 -0.01 2.54 16 13 H 0.03 1.57 4.94 -2.39 -0.01 1.56 16 14 C -0.46 -26.50 6.88 25.60 0.18 -26.32 16 15 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 16 C 0.02 1.19 5.47 84.65 0.46 1.65 16 17 N -0.96 -63.63 13.96 21.45 0.30 -63.34 16 18 Si 0.92 48.78 27.00 68.60 1.85 50.63 16 19 H -0.29 -16.10 7.11 99.48 0.71 -15.39 16 20 H -0.22 -10.41 4.72 99.48 0.47 -9.94 16 21 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 22 C -0.06 -2.59 4.65 -19.87 -0.09 -2.68 16 23 C -0.12 -4.40 8.93 22.27 0.20 -4.20 16 24 C -0.13 -3.84 10.05 22.27 0.22 -3.61 16 25 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 27 C -0.15 -5.52 8.70 22.27 0.19 -5.33 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.41 7.91 8.47 -92.70 -0.79 7.13 16 42 H 0.10 3.25 8.05 -2.38 -0.02 3.23 16 43 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 45 H 0.11 4.20 7.87 -2.91 -0.02 4.18 16 46 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 47 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 48 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 49 H 0.11 3.96 7.12 -2.91 -0.02 3.94 16 Total: -1.00 -81.91 399.75 2.76 -79.15 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.11 Total: 22.43 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 4.88 Total: -26.60 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -2.27 Total: -86.20 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.59 Total: -39.41 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 1.85 Total: 50.63 kcal Total: -81.91 2.76 -79.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354720740.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.009 kcal (2) G-P(sol) polarization free energy of solvation -81.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds