Wall clock time and date at job start Tue Mar 31 2020 12:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46808 * 2 1 4 4 C 1.46503 * 120.00025 * 269.99786 * 3 2 1 5 5 C 1.52999 * 109.47222 * 270.00579 * 4 3 2 6 6 C 1.52999 * 109.47129 * 60.00170 * 5 4 3 7 7 C 1.53004 * 109.46834 * 180.02562 * 5 4 3 8 8 O 1.42897 * 109.47132 * 299.99660 * 5 4 3 9 9 C 1.34774 * 120.00023 * 90.00474 * 3 2 1 10 10 O 1.21284 * 120.00090 * 179.97438 * 9 3 2 11 11 C 1.50706 * 119.99980 * 359.97438 * 9 3 2 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 3 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47580 * 294.05539 * 12 11 9 15 15 H 1.08002 * 119.99831 * 330.08444 * 14 12 11 16 16 C 1.37873 * 120.00048 * 150.07660 * 14 12 11 17 17 N 1.31512 * 120.00113 * 6.56299 * 16 14 12 18 18 Si 1.86803 * 120.00014 * 186.55463 * 16 14 12 19 19 H 1.48500 * 109.47204 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47194 * 300.00656 * 18 16 14 21 21 H 1.48508 * 109.46834 * 60.00612 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38229 * 119.99815 * 64.29763 * 22 12 11 24 24 C 1.38236 * 120.00027 * 179.81055 * 23 22 12 25 25 C 1.38243 * 119.99804 * 0.40118 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85403 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.08998 * 109.46959 * 299.99894 * 1 2 3 29 29 H 1.08993 * 109.46970 * 59.99574 * 1 2 3 30 30 H 1.08994 * 109.47274 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46808 * 240.00400 * 2 1 3 32 32 H 1.08994 * 109.47456 * 120.00223 * 2 1 3 33 33 H 1.08997 * 109.47072 * 30.00658 * 4 3 2 34 34 H 1.09005 * 109.46718 * 150.00389 * 4 3 2 35 35 H 1.08997 * 109.47218 * 59.99888 * 6 5 4 36 36 H 1.09001 * 109.46574 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47195 * 299.99651 * 6 5 4 38 38 H 1.08995 * 109.47586 * 59.99838 * 7 5 4 39 39 H 1.08998 * 109.46678 * 180.02562 * 7 5 4 40 40 H 1.08997 * 109.47092 * 299.99854 * 7 5 4 41 41 H 0.96699 * 114.00368 * 300.00111 * 8 5 4 42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 3 43 43 H 1.08991 * 109.47084 * 300.00132 * 11 9 3 44 44 H 0.97005 * 119.99786 * 354.72486 * 17 16 14 45 45 H 1.08001 * 120.00499 * 0.02562 * 23 22 12 46 46 H 1.08004 * 120.00446 * 180.23518 * 24 23 22 47 47 H 1.08002 * 119.99679 * 179.83458 * 25 24 23 48 48 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7105 6 6 3.9418 0.3306 -1.8935 7 6 3.9626 2.5533 -3.0352 8 8 4.6000 2.3350 -0.7146 9 6 2.2430 2.0166 1.1672 10 8 2.6477 3.1599 1.1672 11 6 1.9914 1.3063 2.4723 12 6 2.3236 2.2434 3.6352 13 1 1.7714 3.1760 3.5194 14 6 3.8026 2.5327 3.6406 15 1 4.4983 1.7960 3.2668 16 6 4.2675 3.7379 4.1226 17 7 3.4370 4.5815 4.6954 18 14 6.0772 4.1724 3.9623 19 1 6.3189 5.5124 4.5550 20 1 6.8946 3.1602 4.6782 21 1 6.4568 4.1898 2.5267 22 6 1.9353 1.5877 4.9354 23 6 2.5733 0.4315 5.3439 24 6 2.2199 -0.1678 6.5384 25 6 1.2226 0.3846 7.3204 26 6 0.5810 1.5380 6.9092 27 6 0.9372 2.1393 5.7166 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0284 34 1 2.0955 3.1411 -1.1383 35 1 3.2610 -0.0535 -2.6531 36 1 4.9714 0.1594 -2.2077 37 1 3.7602 -0.1833 -0.9495 38 1 3.7957 3.6224 -2.9045 39 1 4.9919 2.3816 -3.3501 40 1 3.2818 2.1696 -3.7950 41 1 4.5071 3.2827 -0.5461 42 1 2.6213 0.4186 2.5301 43 1 0.9434 1.0125 2.5299 44 1 2.4860 4.3908 4.7108 45 1 3.3503 -0.0018 4.7316 46 1 2.7210 -1.0690 6.8595 47 1 0.9447 -0.0851 8.2523 48 1 -0.1983 1.9692 7.5199 49 1 0.4362 3.0406 5.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356270821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:49 Heat of formation + Delta-G solvation = -72.326221 kcal Electronic energy + Delta-G solvation = -28583.782692 eV Core-core repulsion = 24896.415193 eV Total energy + Delta-G solvation = -3687.367499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.79458 -38.48440 -37.39533 -35.32494 -34.20555 -32.21712 -31.23134 -30.26093 -30.08373 -29.02185 -27.43295 -26.43253 -24.59372 -23.14493 -22.57219 -21.62871 -20.43997 -19.85657 -18.48166 -16.81867 -16.67306 -16.40452 -15.79189 -15.76447 -14.77121 -14.67551 -14.42776 -14.07528 -13.82433 -13.71637 -13.59496 -13.24100 -12.84275 -12.66878 -12.57289 -12.37601 -12.28653 -12.19852 -12.09921 -12.00804 -11.63696 -11.59356 -11.46110 -11.34274 -11.06885 -10.73773 -10.64377 -10.64128 -10.39152 -10.09439 -9.98536 -9.91151 -9.57126 -8.89324 -8.56323 -8.20849 -8.11358 -8.10247 -7.59178 -6.16653 -3.83026 2.21702 2.27842 3.40053 3.54535 3.57227 3.61492 3.76685 4.48477 4.64957 4.71703 4.83862 4.95308 4.98248 5.05811 5.19551 5.31948 5.41839 5.50399 5.52333 5.61703 5.65099 5.66097 5.69643 5.75243 5.78999 5.82385 5.85397 5.92938 6.03336 6.06808 6.09999 6.15961 6.17839 6.22710 6.30405 6.34837 6.46789 6.72989 6.81568 6.93523 7.00226 7.23834 7.25787 7.41861 7.76710 7.88799 7.96958 8.10656 8.30003 8.59266 9.04197 9.09669 9.85319 11.23653 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.005198 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.871385 B = 5385.817949 C = 6997.426938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.621 5.621 4 C 0.094 3.906 5 C 0.109 3.891 6 C -0.138 4.138 7 C -0.176 4.176 8 O -0.546 6.546 9 C 0.525 3.475 10 O -0.498 6.498 11 C -0.113 4.113 12 C 0.072 3.928 13 H 0.049 0.951 14 C -0.560 4.560 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.908 5.908 18 Si 1.062 2.938 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.286 1.286 22 C -0.029 4.029 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.383 0.617 42 H 0.076 0.924 43 H 0.061 0.939 44 H 0.268 0.732 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.716 -10.295 -11.255 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.357 5.357 4 C -0.030 4.030 5 C 0.066 3.934 6 C -0.195 4.195 7 C -0.234 4.234 8 O -0.352 6.352 9 C 0.314 3.686 10 O -0.370 6.370 11 C -0.154 4.154 12 C 0.053 3.947 13 H 0.067 0.933 14 C -0.598 4.598 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.544 5.544 18 Si 0.892 3.108 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.213 1.213 22 C -0.030 4.030 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.172 4.172 26 C -0.143 4.143 27 C -0.149 4.149 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.231 0.769 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.132 0.868 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.165 -9.099 -10.816 14.735 hybrid contribution -1.289 -0.693 -0.430 1.525 sum -5.454 -9.791 -11.245 15.877 Atomic orbital electron populations 1.22236 0.96565 1.01769 1.02415 1.21567 0.93847 0.83546 1.02973 1.47962 1.68335 1.13874 1.05558 1.21993 0.95766 0.99004 0.86193 1.21574 0.89650 0.94591 0.87552 1.21800 1.01820 0.93871 1.02042 1.22458 1.02406 1.00937 0.97631 1.86554 1.59966 1.29721 1.58999 1.20716 0.76370 0.86956 0.84569 1.90672 1.42037 1.17810 1.86441 1.21698 0.99974 1.00153 0.93536 1.17874 0.98646 0.93020 0.85130 0.93272 1.21506 0.89693 1.03233 1.45343 0.93656 1.25538 1.06008 0.92985 0.92748 1.70767 1.04825 1.39630 1.39216 0.83652 0.74940 0.75909 0.76344 1.21212 1.21941 1.21297 1.20844 0.90775 0.92462 0.98913 1.20916 0.99269 0.96283 0.96152 1.21010 0.98159 0.99963 0.95620 1.20815 0.98928 0.97656 0.99806 1.20956 1.00191 0.96318 0.96796 1.21058 0.98410 0.99958 0.95449 0.92182 0.92773 0.91927 0.90763 0.90330 0.90966 0.90058 0.91906 0.92323 0.91360 0.92242 0.91819 0.92025 0.76870 0.90526 0.92046 0.91995 0.86794 0.87495 0.87630 0.87521 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.10 1.21 4.84 -4.04 -0.02 1.19 16 3 N -0.62 -9.37 2.15 -173.68 -0.37 -9.75 16 4 C 0.09 1.26 4.70 -4.04 -0.02 1.24 16 5 C 0.11 1.43 1.17 -90.62 -0.11 1.33 16 6 C -0.14 -1.61 7.60 37.16 0.28 -1.33 16 7 C -0.18 -1.86 8.82 37.16 0.33 -1.53 16 8 O -0.55 -9.63 11.79 -44.00 -0.52 -10.15 16 9 C 0.53 10.46 6.94 -10.98 -0.08 10.39 16 10 O -0.50 -11.99 13.38 -3.21 -0.04 -12.03 16 11 C -0.11 -2.25 3.49 -27.88 -0.10 -2.35 16 12 C 0.07 1.75 1.31 -92.92 -0.12 1.62 16 13 H 0.05 1.34 6.23 -51.93 -0.32 1.01 16 14 C -0.56 -15.36 6.40 -34.44 -0.22 -15.58 16 15 H 0.05 1.27 7.82 -52.49 -0.41 0.86 16 16 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 17 N -0.91 -27.88 13.63 55.43 0.76 -27.13 16 18 Si 1.06 26.76 29.91 -169.99 -5.08 21.68 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.03 -0.65 4.77 -104.63 -0.50 -1.15 16 23 C -0.11 -2.24 8.88 -39.59 -0.35 -2.59 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.15 -2.71 10.05 -39.58 -0.40 -3.11 16 26 C -0.12 -2.32 10.05 -39.59 -0.40 -2.71 16 27 C -0.13 -2.76 9.67 -39.59 -0.38 -3.15 16 28 H 0.06 0.71 7.22 -51.93 -0.37 0.33 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.71 6.05 -51.93 -0.31 0.40 16 32 H 0.08 0.95 6.44 -51.93 -0.33 0.62 16 33 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.88 5.99 -51.93 -0.31 0.57 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.38 6.75 8.45 45.56 0.38 7.14 16 42 H 0.08 1.46 7.12 -51.93 -0.37 1.09 16 43 H 0.06 1.08 7.18 -51.93 -0.37 0.71 16 44 H 0.27 8.17 6.68 -40.82 -0.27 7.90 16 45 H 0.11 2.32 7.80 -52.49 -0.41 1.92 16 46 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 47 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 49 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.42 388.12 -8.96 -42.37 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.35 Total: 10.17 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.19 Total: -21.01 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.38 Total: -36.87 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.56 Total: -22.18 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -5.08 Total: 21.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.42 -8.96 -42.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356270821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.952 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds