Wall clock time and date at job start Tue Mar 31 2020 13:50:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46503 * 120.00046 * 2 1
4 4 C 1.52999 * 109.46669 * 269.99626 * 3 2 1
5 5 C 1.53001 * 109.47094 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47407 * 180.02562 * 5 4 3
7 7 C 1.53001 * 109.47407 * 180.02562 * 6 5 4
8 8 O 1.42898 * 109.47311 * 179.97438 * 7 6 5
9 9 C 1.34774 * 120.00015 * 179.97438 * 2 1 3
10 10 O 1.21284 * 120.00090 * 180.02562 * 9 2 1
11 11 C 1.50706 * 119.99980 * 0.02562 * 9 2 1
12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 2
13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9
14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9
15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11
16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11
17 17 N 1.31515 * 120.00158 * 6.56401 * 16 14 12
18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12
19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14
20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14
21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14
22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9
23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11
24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12
25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22
26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23
27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24
28 28 H 1.09001 * 109.47153 * 270.00340 * 1 2 3
29 29 H 1.09005 * 109.47231 * 29.99977 * 1 2 3
30 30 H 1.08993 * 109.47434 * 150.00596 * 1 2 3
31 31 H 1.08997 * 109.47337 * 29.99529 * 3 2 1
32 32 H 1.08998 * 109.47138 * 150.00271 * 3 2 1
33 33 H 1.08996 * 109.47480 * 300.00452 * 4 3 2
34 34 H 1.09005 * 109.47430 * 60.00231 * 4 3 2
35 35 H 1.08997 * 109.47169 * 300.00060 * 5 4 3
36 36 H 1.08995 * 109.47249 * 59.99886 * 5 4 3
37 37 H 1.08996 * 109.47170 * 300.00507 * 6 5 4
38 38 H 1.09007 * 109.46797 * 59.99690 * 6 5 4
39 39 H 1.09004 * 109.46846 * 300.00050 * 7 6 5
40 40 H 1.08996 * 109.46742 * 59.99837 * 7 6 5
41 41 H 0.96700 * 114.00337 * 180.02562 * 8 7 6
42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 2
43 43 H 1.09002 * 109.46876 * 299.99722 * 11 9 2
44 44 H 0.96995 * 120.00002 * 354.72529 * 17 16 14
45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12
46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22
47 47 H 1.08006 * 119.99774 * 179.83158 * 25 24 23
48 48 H 1.08002 * 119.99968 * 179.97438 * 26 25 24
49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7103 -1.4425
5 6 3.2170 3.0356 -1.4426
6 6 3.4715 3.4775 -2.8852
7 6 4.2365 4.8025 -2.8853
8 8 4.4747 5.2150 -4.2326
9 6 2.1389 -1.1672 0.0005
10 8 3.3517 -1.1672 0.0010
11 6 1.3853 -2.4723 0.0005
12 6 2.3796 -3.6352 0.0005
13 1 3.0742 -3.5194 0.8325
14 6 3.1463 -3.6406 -1.2969
15 1 2.6842 -3.2669 -2.1987
16 6 4.4374 -4.1228 -1.3326
17 7 4.9551 -4.6958 -0.2680
18 14 5.4516 -3.9622 -2.8932
19 1 5.2444 -5.1617 -3.7438
20 1 5.0271 -2.7488 -3.6367
21 1 6.8894 -3.8484 -2.5396
22 6 1.6319 -4.9354 0.1476
23 6 0.7552 -5.3441 -0.8399
24 6 0.0723 -6.5385 -0.7068
25 6 0.2599 -7.3204 0.4176
26 6 1.1326 -6.9091 1.4077
27 6 1.8184 -5.7165 1.2727
28 1 -0.3633 0.0001 1.0277
29 1 -0.3634 0.8900 -0.5138
30 1 -0.3634 -0.8900 -0.5137
31 1 1.6085 2.0284 0.5137
32 1 3.1499 1.1384 0.5138
33 1 3.0415 0.9506 -1.9563
34 1 1.5001 1.8406 -1.9565
35 1 2.6276 3.7951 -0.9290
36 1 4.1693 2.9058 -0.9287
37 1 4.0607 2.7182 -3.3992
38 1 2.5188 3.6075 -3.3988
39 1 3.6476 5.5621 -2.3711
40 1 5.1891 4.6721 -2.3718
41 1 4.9571 6.0496 -4.3090
42 1 0.7590 -2.5302 -0.8897
43 1 0.7584 -2.5298 0.8903
44 1 4.4578 -4.7112 0.5646
45 1 0.6057 -4.7314 -1.7167
46 1 -0.6099 -6.8597 -1.4802
47 1 -0.2757 -8.2523 0.5229
48 1 1.2789 -7.5197 2.2864
49 1 2.5005 -5.3954 2.0460
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000357172929.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:50:50
Heat of formation + Delta-G solvation = -84.384894 kcal
Electronic energy + Delta-G solvation = -26869.398267 eV
Core-core repulsion = 23181.507865 eV
Total energy + Delta-G solvation = -3687.890402 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.43874 -38.37434 -37.46928 -35.87389 -34.33391 -34.17751 -31.41621 -30.51520
-30.10168 -28.76224 -26.72808 -25.75108 -24.37786 -22.91375 -21.88778 -21.59296
-21.14070 -19.95879 -18.49596 -17.51362 -16.87053 -16.53284 -16.07506 -15.73063
-15.64723 -15.05604 -14.53733 -14.38618 -14.16282 -14.04995 -13.64679 -13.25224
-13.01543 -12.78199 -12.61496 -12.56334 -12.39483 -12.23420 -12.16360 -11.93822
-11.69903 -11.50546 -11.30057 -11.19368 -11.02322 -10.86929 -10.68721 -10.51338
-10.41368 -10.18773 -10.12737 -10.02757 -9.62110 -8.96713 -8.61364 -8.26876
-8.21053 -8.13311 -7.62107 -6.21313 -3.88613 2.19759 2.25700 3.39236
3.48468 3.51332 3.57970 3.71063 3.99453 4.61834 4.68082 4.75643
4.89731 4.99809 5.04432 5.18871 5.22935 5.29265 5.44025 5.48019
5.51872 5.60165 5.63835 5.64831 5.71343 5.75906 5.76667 5.77337
5.77859 5.98868 6.01588 6.09045 6.12880 6.17253 6.29750 6.32369
6.40204 6.43424 6.68698 6.79175 6.91520 6.97910 7.21439 7.23339
7.37707 7.39225 7.73455 7.86190 7.90653 8.24813 8.53173 8.98158
9.01877 9.80557 11.19202
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013375 B = 0.003266 C = 0.002826
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2092.905522 B = 8570.447844 C = 9907.247483
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.636 5.636
3 C 0.120 3.880
4 C -0.134 4.134
5 C -0.112 4.112
6 C -0.121 4.121
7 C 0.075 3.925
8 O -0.577 6.577
9 C 0.515 3.485
10 O -0.497 6.497
11 C -0.115 4.115
12 C 0.072 3.928
13 H 0.050 0.950
14 C -0.566 4.566
15 H 0.045 0.955
16 C 0.033 3.967
17 N -0.907 5.907
18 Si 1.064 2.936
19 H -0.291 1.291
20 H -0.290 1.290
21 H -0.285 1.285
22 C -0.030 4.030
23 C -0.108 4.108
24 C -0.129 4.129
25 C -0.153 4.153
26 C -0.124 4.124
27 C -0.130 4.130
28 H 0.048 0.952
29 H 0.062 0.938
30 H 0.071 0.929
31 H 0.066 0.934
32 H 0.080 0.920
33 H 0.073 0.927
34 H 0.060 0.940
35 H 0.061 0.939
36 H 0.066 0.934
37 H 0.072 0.928
38 H 0.067 0.933
39 H 0.043 0.957
40 H 0.046 0.954
41 H 0.377 0.623
42 H 0.078 0.922
43 H 0.064 0.936
44 H 0.270 0.730
45 H 0.114 0.886
46 H 0.107 0.893
47 H 0.106 0.894
48 H 0.107 0.893
49 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.689 13.592 0.566 16.702
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 N -0.373 5.373
3 C -0.003 4.003
4 C -0.173 4.173
5 C -0.150 4.150
6 C -0.159 4.159
7 C -0.003 4.003
8 O -0.382 6.382
9 C 0.303 3.697
10 O -0.368 6.368
11 C -0.155 4.155
12 C 0.053 3.947
13 H 0.068 0.932
14 C -0.604 4.604
15 H 0.063 0.937
16 C -0.173 4.173
17 N -0.542 5.542
18 Si 0.894 3.106
19 H -0.218 1.218
20 H -0.216 1.216
21 H -0.211 1.211
22 C -0.031 4.031
23 C -0.126 4.126
24 C -0.148 4.148
25 C -0.171 4.171
26 C -0.142 4.142
27 C -0.148 4.148
28 H 0.067 0.933
29 H 0.081 0.919
30 H 0.090 0.910
31 H 0.084 0.916
32 H 0.099 0.901
33 H 0.091 0.909
34 H 0.078 0.922
35 H 0.080 0.920
36 H 0.085 0.915
37 H 0.090 0.910
38 H 0.086 0.914
39 H 0.062 0.938
40 H 0.064 0.936
41 H 0.224 0.776
42 H 0.096 0.904
43 H 0.082 0.918
44 H 0.082 0.918
45 H 0.132 0.868
46 H 0.125 0.875
47 H 0.124 0.876
48 H 0.125 0.875
49 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -7.854 12.610 -0.222 14.857
hybrid contribution -1.288 0.868 0.697 1.702
sum -9.142 13.477 0.475 16.292
Atomic orbital electron populations
1.21658 0.80502 1.02698 1.01077 1.48060 1.06365 1.06079 1.76832
1.21296 0.97760 0.84931 0.96326 1.21942 1.00457 0.96982 0.97946
1.21408 1.00868 0.97019 0.95731 1.21532 1.00798 0.95980 0.97557
1.22240 0.98688 0.96389 0.82945 1.86498 1.79887 1.44417 1.27378
1.20895 0.88505 0.84792 0.75512 1.90735 1.13686 1.86532 1.45830
1.21704 0.99195 0.93393 1.01184 1.17879 0.91561 0.85161 1.00144
0.93154 1.21539 0.99757 1.45824 0.93270 0.93707 1.25555 0.95688
0.92685 1.03329 1.70725 1.42500 1.38995 1.02007 0.83619 0.76372
0.75838 0.74781 1.21829 1.21628 1.21104 1.20835 0.92075 0.98881
0.91328 1.20909 0.96850 0.96177 0.98701 1.21009 1.00580 0.95612
0.97551 1.20821 1.01004 0.99803 0.95510 1.20963 0.97768 0.96779
0.98723 1.21064 1.00071 0.95434 0.98258 0.93326 0.91900 0.91017
0.91571 0.90141 0.90861 0.92165 0.92031 0.91483 0.90961 0.91391
0.93847 0.93591 0.77623 0.90361 0.91809 0.91843 0.86784 0.87460
0.87597 0.87476 0.87197
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.95 10.24 59.85 0.61 1.56 16
2 N -0.64 -9.83 2.87 -181.57 -0.52 -10.35 16
3 C 0.12 1.63 5.41 -4.04 -0.02 1.60 16
4 C -0.13 -1.74 5.54 -26.73 -0.15 -1.89 16
5 C -0.11 -1.18 5.21 -26.73 -0.14 -1.31 16
6 C -0.12 -1.32 5.58 -26.73 -0.15 -1.47 16
7 C 0.07 0.70 7.05 37.16 0.26 0.96 16
8 O -0.58 -5.90 13.66 -35.23 -0.48 -6.38 16
9 C 0.51 10.46 7.43 -10.98 -0.08 10.38 16
10 O -0.50 -12.47 14.60 5.55 0.08 -12.39 16
11 C -0.11 -2.26 3.49 -27.88 -0.10 -2.36 16
12 C 0.07 1.73 1.31 -92.92 -0.12 1.61 16
13 H 0.05 1.37 6.23 -51.93 -0.32 1.05 16
14 C -0.57 -15.52 6.40 -34.44 -0.22 -15.75 16
15 H 0.04 1.24 7.82 -52.49 -0.41 0.83 16
16 C 0.03 0.96 5.45 -17.82 -0.10 0.86 16
17 N -0.91 -27.88 13.63 55.43 0.76 -27.13 16
18 Si 1.06 26.73 29.91 -169.99 -5.08 21.65 16
19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
22 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16
23 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16
24 C -0.13 -2.34 10.05 -39.59 -0.40 -2.73 16
25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16
26 C -0.12 -2.29 10.05 -39.59 -0.40 -2.69 16
27 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16
28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
29 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16
30 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16
31 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16
32 H 0.08 1.26 7.42 -51.93 -0.39 0.87 16
33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16
38 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16
39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.38 1.99 9.12 45.56 0.42 2.40 16
42 H 0.08 1.45 7.12 -51.93 -0.37 1.08 16
43 H 0.06 1.11 8.11 -51.93 -0.42 0.69 16
44 H 0.27 8.21 6.68 -40.82 -0.27 7.94 16
45 H 0.11 2.28 7.80 -52.48 -0.41 1.87 16
46 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16
47 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16
48 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16
49 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16
LS Contribution 400.86 15.07 6.04 6.04
Total: -1.00 -35.02 400.86 -9.47 -44.50
By element:
Atomic # 1 Polarization: 12.87 SS G_CDS: -7.64 Total: 5.24 kcal
Atomic # 6 Polarization: -18.54 SS G_CDS: -2.63 Total: -21.17 kcal
Atomic # 7 Polarization: -37.72 SS G_CDS: 0.23 Total: -37.48 kcal
Atomic # 8 Polarization: -18.38 SS G_CDS: -0.40 Total: -18.78 kcal
Atomic # 14 Polarization: 26.73 SS G_CDS: -5.08 Total: 21.65 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -35.02 -9.47 -44.50 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000357172929.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.886 kcal
(2) G-P(sol) polarization free energy of solvation -35.024 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.385 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds