Wall clock time and date at job start Tue Mar 31 2020 13:50:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46503 * 120.00046 * 2 1
4 4 C 1.52999 * 109.46669 * 269.99626 * 3 2 1
5 5 C 1.53001 * 109.47094 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47407 * 180.02562 * 5 4 3
7 7 C 1.53001 * 109.47407 * 180.02562 * 6 5 4
8 8 O 1.42898 * 109.47311 * 179.97438 * 7 6 5
9 9 C 1.34774 * 120.00015 * 179.97438 * 2 1 3
10 10 O 1.21284 * 120.00090 * 180.02562 * 9 2 1
11 11 C 1.50706 * 119.99980 * 0.02562 * 9 2 1
12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 2
13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9
14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9
15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11
16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11
17 17 N 1.31515 * 120.00158 * 6.56401 * 16 14 12
18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12
19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14
20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14
21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14
22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9
23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11
24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12
25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22
26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23
27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24
28 28 H 1.09001 * 109.47153 * 270.00340 * 1 2 3
29 29 H 1.09005 * 109.47231 * 29.99977 * 1 2 3
30 30 H 1.08993 * 109.47434 * 150.00596 * 1 2 3
31 31 H 1.08997 * 109.47337 * 29.99529 * 3 2 1
32 32 H 1.08998 * 109.47138 * 150.00271 * 3 2 1
33 33 H 1.08996 * 109.47480 * 300.00452 * 4 3 2
34 34 H 1.09005 * 109.47430 * 60.00231 * 4 3 2
35 35 H 1.08997 * 109.47169 * 300.00060 * 5 4 3
36 36 H 1.08995 * 109.47249 * 59.99886 * 5 4 3
37 37 H 1.08996 * 109.47170 * 300.00507 * 6 5 4
38 38 H 1.09007 * 109.46797 * 59.99690 * 6 5 4
39 39 H 1.09004 * 109.46846 * 300.00050 * 7 6 5
40 40 H 1.08996 * 109.46742 * 59.99837 * 7 6 5
41 41 H 0.96700 * 114.00337 * 180.02562 * 8 7 6
42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 2
43 43 H 1.09002 * 109.46876 * 299.99722 * 11 9 2
44 44 H 0.96995 * 120.00002 * 354.72529 * 17 16 14
45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12
46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22
47 47 H 1.08006 * 119.99774 * 179.83158 * 25 24 23
48 48 H 1.08002 * 119.99968 * 179.97438 * 26 25 24
49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7103 -1.4425
5 6 3.2170 3.0356 -1.4426
6 6 3.4715 3.4775 -2.8852
7 6 4.2365 4.8025 -2.8853
8 8 4.4747 5.2150 -4.2326
9 6 2.1389 -1.1672 0.0005
10 8 3.3517 -1.1672 0.0010
11 6 1.3853 -2.4723 0.0005
12 6 2.3796 -3.6352 0.0005
13 1 3.0742 -3.5194 0.8325
14 6 3.1463 -3.6406 -1.2969
15 1 2.6842 -3.2669 -2.1987
16 6 4.4374 -4.1228 -1.3326
17 7 4.9551 -4.6958 -0.2680
18 14 5.4516 -3.9622 -2.8932
19 1 5.2444 -5.1617 -3.7438
20 1 5.0271 -2.7488 -3.6367
21 1 6.8894 -3.8484 -2.5396
22 6 1.6319 -4.9354 0.1476
23 6 0.7552 -5.3441 -0.8399
24 6 0.0723 -6.5385 -0.7068
25 6 0.2599 -7.3204 0.4176
26 6 1.1326 -6.9091 1.4077
27 6 1.8184 -5.7165 1.2727
28 1 -0.3633 0.0001 1.0277
29 1 -0.3634 0.8900 -0.5138
30 1 -0.3634 -0.8900 -0.5137
31 1 1.6085 2.0284 0.5137
32 1 3.1499 1.1384 0.5138
33 1 3.0415 0.9506 -1.9563
34 1 1.5001 1.8406 -1.9565
35 1 2.6276 3.7951 -0.9290
36 1 4.1693 2.9058 -0.9287
37 1 4.0607 2.7182 -3.3992
38 1 2.5188 3.6075 -3.3988
39 1 3.6476 5.5621 -2.3711
40 1 5.1891 4.6721 -2.3718
41 1 4.9571 6.0496 -4.3090
42 1 0.7590 -2.5302 -0.8897
43 1 0.7584 -2.5298 0.8903
44 1 4.4578 -4.7112 0.5646
45 1 0.6057 -4.7314 -1.7167
46 1 -0.6099 -6.8597 -1.4802
47 1 -0.2757 -8.2523 0.5229
48 1 1.2789 -7.5197 2.2864
49 1 2.5005 -5.3954 2.0460
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000357172929.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:50:49
Heat of formation + Delta-G solvation = -106.997732 kcal
Electronic energy + Delta-G solvation = -26870.378833 eV
Core-core repulsion = 23181.507865 eV
Total energy + Delta-G solvation = -3688.870968 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.96323 -39.89092 -38.28600 -37.12831 -36.04114 -35.39179 -33.32299 -31.67396
-31.59099 -30.21462 -27.72852 -27.36748 -25.90942 -24.52653 -23.23654 -22.86755
-22.05828 -21.61306 -19.97355 -18.73869 -18.27060 -18.08186 -17.27365 -17.05250
-16.83309 -16.43690 -15.95669 -15.70263 -15.66910 -15.33410 -15.14397 -14.74552
-14.49028 -14.06925 -14.04623 -13.87585 -13.62129 -13.57541 -13.45610 -13.22305
-13.10060 -12.81324 -12.69370 -12.63641 -12.25290 -12.18033 -12.08113 -11.96725
-11.86608 -11.72254 -11.53046 -11.46383 -10.90196 -10.70703 -10.61506 -10.30638
-9.64833 -9.52889 -9.27805 -8.46834 -6.12059 0.67153 0.73388 1.43705
1.55790 1.69050 1.87301 2.19129 2.57731 3.09838 3.28304 3.36596
3.79277 3.94696 4.06187 4.11501 4.12486 4.18839 4.27858 4.28911
4.33326 4.42290 4.43758 4.45874 4.49257 4.57211 4.62208 4.68279
4.73035 4.80523 4.84351 4.86305 4.88931 4.93455 4.97907 5.10560
5.15183 5.22220 5.32984 5.37461 5.40152 5.41758 5.73932 5.76428
5.81985 5.93349 6.23171 6.29465 6.37971 6.53071 6.77259 6.88497
7.47626 7.63155 8.93682
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013375 B = 0.003266 C = 0.002826
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2092.905522 B = 8570.447844 C = 9907.247483
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.075 3.925
2 N -0.628 5.628
3 C 0.117 3.883
4 C -0.127 4.127
5 C -0.103 4.103
6 C -0.122 4.122
7 C 0.076 3.924
8 O -0.601 6.601
9 C 0.507 3.493
10 O -0.561 6.561
11 C -0.106 4.106
12 C 0.074 3.926
13 H 0.005 0.995
14 C -0.555 4.555
15 H 0.036 0.964
16 C -0.023 4.023
17 N -0.942 5.942
18 Si 1.098 2.902
19 H -0.271 1.271
20 H -0.283 1.283
21 H -0.290 1.290
22 C -0.056 4.056
23 C -0.123 4.123
24 C -0.124 4.124
25 C -0.144 4.144
26 C -0.124 4.124
27 C -0.153 4.153
28 H 0.069 0.931
29 H 0.094 0.906
30 H 0.071 0.929
31 H 0.111 0.889
32 H 0.051 0.949
33 H 0.024 0.976
34 H 0.077 0.923
35 H 0.094 0.906
36 H 0.058 0.942
37 H 0.042 0.958
38 H 0.069 0.931
39 H 0.068 0.932
40 H 0.049 0.951
41 H 0.398 0.602
42 H 0.093 0.907
43 H 0.088 0.912
44 H 0.258 0.742
45 H 0.112 0.888
46 H 0.143 0.857
47 H 0.148 0.852
48 H 0.135 0.865
49 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.042 14.182 0.188 19.268
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 N -0.362 5.362
3 C -0.005 4.005
4 C -0.166 4.166
5 C -0.141 4.141
6 C -0.160 4.160
7 C -0.002 4.002
8 O -0.409 6.409
9 C 0.296 3.704
10 O -0.438 6.438
11 C -0.146 4.146
12 C 0.055 3.945
13 H 0.024 0.976
14 C -0.593 4.593
15 H 0.054 0.946
16 C -0.221 4.221
17 N -0.581 5.581
18 Si 0.924 3.076
19 H -0.197 1.197
20 H -0.209 1.209
21 H -0.216 1.216
22 C -0.056 4.056
23 C -0.141 4.141
24 C -0.141 4.141
25 C -0.162 4.162
26 C -0.142 4.142
27 C -0.171 4.171
28 H 0.088 0.912
29 H 0.113 0.887
30 H 0.090 0.910
31 H 0.129 0.871
32 H 0.070 0.930
33 H 0.043 0.957
34 H 0.095 0.905
35 H 0.113 0.887
36 H 0.076 0.924
37 H 0.061 0.939
38 H 0.088 0.912
39 H 0.087 0.913
40 H 0.068 0.932
41 H 0.247 0.753
42 H 0.111 0.889
43 H 0.107 0.893
44 H 0.069 0.931
45 H 0.131 0.869
46 H 0.161 0.839
47 H 0.165 0.835
48 H 0.153 0.847
49 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -11.276 13.245 -0.610 17.405
hybrid contribution -0.401 0.733 0.857 1.197
sum -11.677 13.978 0.247 18.216
Atomic orbital electron populations
1.21998 0.77328 1.04378 1.02968 1.48080 1.08366 1.05258 1.74546
1.21484 0.97254 0.84934 0.96876 1.21852 1.00748 0.96923 0.97047
1.21340 1.00656 0.96368 0.95753 1.21517 1.00689 0.96345 0.97441
1.22238 0.99057 0.95965 0.82916 1.86439 1.80474 1.46084 1.27941
1.21061 0.87852 0.86408 0.75092 1.90709 1.16270 1.87585 1.49259
1.21567 0.98346 0.91780 1.02917 1.17692 0.91879 0.88237 0.96675
0.97645 1.21780 0.99801 1.43524 0.94203 0.94605 1.26669 0.97456
0.92968 1.05043 1.70812 1.42912 1.42021 1.02308 0.83172 0.74972
0.76762 0.72733 1.19691 1.20872 1.21636 1.20620 0.93814 0.98145
0.93057 1.20987 0.97333 0.97662 0.98144 1.21407 0.99956 0.94213
0.98564 1.21313 0.99827 1.00778 0.94256 1.21298 0.97042 0.95695
1.00178 1.21116 1.00960 0.96970 0.98093 0.91240 0.88694 0.90979
0.87071 0.93021 0.95670 0.90485 0.88709 0.92353 0.93947 0.91218
0.91349 0.93248 0.75258 0.88926 0.89347 0.93125 0.86949 0.83879
0.83474 0.84685 0.88776
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.47 10.24 127.77 1.31 2.78 16
2 N -0.63 -19.02 2.87 -846.75 -2.43 -21.45 16
3 C 0.12 3.08 5.41 86.38 0.47 3.55 16
4 C -0.13 -3.26 5.54 30.59 0.17 -3.09 16
5 C -0.10 -2.06 5.21 30.60 0.16 -1.90 16
6 C -0.12 -2.62 5.58 30.60 0.17 -2.45 16
7 C 0.08 1.30 7.05 71.98 0.51 1.81 16
8 O -0.60 -11.62 13.66 -148.98 -2.03 -13.65 16
9 C 0.51 21.40 7.43 87.66 0.65 22.05 16
10 O -0.56 -30.29 14.60 -3.04 -0.04 -30.34 16
11 C -0.11 -4.28 3.49 29.85 0.10 -4.18 16
12 C 0.07 3.77 1.31 -12.29 -0.02 3.76 16
13 H 0.01 0.31 6.23 -2.39 -0.01 0.30 16
14 C -0.56 -31.86 6.40 25.60 0.16 -31.69 16
15 H 0.04 2.06 7.82 -2.91 -0.02 2.03 16
16 C -0.02 -1.39 5.45 84.65 0.46 -0.93 16
17 N -0.94 -61.27 13.63 21.45 0.29 -60.98 16
18 Si 1.10 55.90 29.91 68.60 2.05 57.95 16
19 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16
20 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16
21 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16
22 C -0.06 -2.55 4.77 -19.87 -0.09 -2.64 16
23 C -0.12 -4.95 8.88 22.27 0.20 -4.75 16
24 C -0.12 -4.07 10.05 22.27 0.22 -3.85 16
25 C -0.14 -4.47 10.05 22.27 0.22 -4.25 16
26 C -0.12 -4.36 10.05 22.27 0.22 -4.13 16
27 C -0.15 -6.60 9.67 22.27 0.22 -6.38 16
28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
29 H 0.09 1.31 8.07 -2.38 -0.02 1.29 16
30 H 0.07 1.44 6.44 -2.39 -0.02 1.42 16
31 H 0.11 1.96 8.07 -2.39 -0.02 1.94 16
32 H 0.05 1.68 7.42 -2.39 -0.02 1.66 16
33 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16
35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16
37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16
38 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16
39 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16
40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
41 H 0.40 3.61 9.12 -74.06 -0.68 2.93 16
42 H 0.09 3.42 7.12 -2.39 -0.02 3.41 16
43 H 0.09 3.07 8.11 -2.39 -0.02 3.05 16
44 H 0.26 16.89 6.68 -92.71 -0.62 16.27 16
45 H 0.11 4.43 7.80 -2.91 -0.02 4.41 16
46 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16
47 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16
48 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16
49 H 0.09 4.21 7.95 -2.91 -0.02 4.19 16
Total: -1.00 -83.36 400.86 3.36 -80.00
By element:
Atomic # 1 Polarization: 24.37 SS G_CDS: 0.39 Total: 24.76 kcal
Atomic # 6 Polarization: -41.42 SS G_CDS: 5.14 Total: -36.29 kcal
Atomic # 7 Polarization: -80.29 SS G_CDS: -2.14 Total: -82.43 kcal
Atomic # 8 Polarization: -41.91 SS G_CDS: -2.08 Total: -43.99 kcal
Atomic # 14 Polarization: 55.90 SS G_CDS: 2.05 Total: 57.95 kcal
Total: -83.36 3.36 -80.00 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000357172929.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.997 kcal
(2) G-P(sol) polarization free energy of solvation -83.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.355 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds