Wall clock time and date at job start Tue Mar 31 2020 13:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00484 * 2 1 4 4 C 1.53006 * 109.46963 * 270.00081 * 3 2 1 5 5 C 1.52998 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46887 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46887 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47258 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00020 * 179.97438 * 2 1 3 10 10 O 1.21276 * 120.00117 * 180.02562 * 9 2 1 11 11 C 1.50703 * 119.99807 * 0.27569 * 9 2 1 12 12 C 1.53003 * 109.47252 * 179.72544 * 11 9 2 13 13 H 1.09000 * 109.46766 * 305.00272 * 12 11 9 14 14 C 1.50696 * 109.47252 * 65.00018 * 12 11 9 15 15 H 1.08000 * 120.00385 * 234.68635 * 14 12 11 16 16 C 1.37881 * 119.99687 * 54.67602 * 14 12 11 17 17 N 1.31512 * 120.00310 * 4.87974 * 16 14 12 18 18 Si 1.86805 * 120.00034 * 184.87267 * 16 14 12 19 19 H 1.48500 * 109.46886 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46877 * 120.00349 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00504 * 18 16 14 22 22 C 1.50699 * 109.47038 * 185.00387 * 12 11 9 23 23 C 1.38237 * 119.99708 * 151.49066 * 22 12 11 24 24 C 1.38231 * 119.99613 * 179.78835 * 23 22 12 25 25 C 1.38237 * 120.00335 * 0.43657 * 24 23 22 26 26 C 1.38237 * 119.99507 * 359.80955 * 25 24 23 27 27 C 1.38226 * 120.00167 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47267 * 270.00321 * 1 2 3 29 29 H 1.08999 * 109.46536 * 30.00819 * 1 2 3 30 30 H 1.09000 * 109.46983 * 149.99956 * 1 2 3 31 31 H 1.09007 * 109.47016 * 29.99172 * 3 2 1 32 32 H 1.09000 * 109.47837 * 149.99533 * 3 2 1 33 33 H 1.09007 * 109.46512 * 299.99400 * 4 3 2 34 34 H 1.09000 * 109.47292 * 59.99118 * 4 3 2 35 35 H 1.08996 * 109.47094 * 299.99757 * 5 4 3 36 36 H 1.09000 * 109.46994 * 59.99616 * 5 4 3 37 37 H 1.09002 * 109.47340 * 299.99596 * 6 5 4 38 38 H 1.09000 * 109.47211 * 60.00246 * 6 5 4 39 39 H 1.09001 * 109.47522 * 300.00111 * 7 6 5 40 40 H 1.09000 * 109.47518 * 60.00078 * 7 6 5 41 41 H 0.96694 * 114.00221 * 180.02562 * 8 7 6 42 42 H 1.08997 * 109.47212 * 299.72435 * 11 9 2 43 43 H 1.09002 * 109.46706 * 59.72934 * 11 9 2 44 44 H 0.96998 * 120.00643 * 179.97438 * 17 16 14 45 45 H 1.07997 * 120.00194 * 359.97438 * 23 22 12 46 46 H 1.08006 * 119.99942 * 180.27249 * 24 23 22 47 47 H 1.07994 * 120.00106 * 179.84074 * 25 24 23 48 48 H 1.08004 * 119.99611 * 179.97438 * 26 25 24 49 49 H 1.08007 * 120.00058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2172 3.0355 -1.4426 6 6 3.4727 3.4768 -2.8851 7 6 4.2367 4.8024 -2.8852 8 8 4.4749 5.2149 -4.2325 9 6 2.1389 -1.1672 0.0005 10 8 3.3517 -1.1672 0.0010 11 6 1.3854 -2.4723 -0.0052 12 6 2.3796 -3.6353 -0.0102 13 1 3.0637 -3.5247 -0.8515 14 6 3.1624 -3.6326 1.2775 15 1 4.2420 -3.6170 1.2532 16 6 2.5002 -3.6498 2.4868 17 7 1.1906 -3.7654 2.5178 18 14 3.4634 -3.5091 4.0811 19 1 4.9118 -3.3901 3.7756 20 1 3.0146 -2.3054 4.8260 21 1 3.2296 -4.7194 4.9092 22 6 1.6301 -4.9363 -0.1398 23 6 2.2343 -6.0251 -0.7401 24 6 1.5485 -7.2197 -0.8550 25 6 0.2552 -7.3229 -0.3779 26 6 -0.3508 -6.2325 0.2178 27 6 0.3367 -5.0393 0.3367 28 1 -0.3633 0.0001 1.0276 29 1 -0.3632 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5139 33 1 3.0417 0.9505 -1.9563 34 1 1.5002 1.8405 -1.9565 35 1 2.6278 3.7950 -0.9290 36 1 4.1695 2.9056 -0.9286 37 1 4.0623 2.7172 -3.3985 38 1 2.5205 3.6067 -3.3995 39 1 3.6468 5.5618 -2.3720 40 1 5.1889 4.6730 -2.3707 41 1 4.9566 6.0498 -4.3088 42 1 0.7587 -2.5339 0.8845 43 1 0.7588 -2.5261 -0.8955 44 1 0.7247 -3.7779 3.3685 45 1 3.2433 -5.9433 -1.1165 46 1 2.0221 -8.0718 -1.3200 47 1 -0.2816 -8.2555 -0.4700 48 1 -1.3614 -6.3131 0.5902 49 1 -0.1370 -4.1872 0.8017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357172930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:56 Heat of formation + Delta-G solvation = -75.233980 kcal Electronic energy + Delta-G solvation = -27028.892549 eV Core-core repulsion = 23341.398960 eV Total energy + Delta-G solvation = -3687.493589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.24494 -38.10783 -37.48128 -35.77957 -34.25892 -34.09807 -31.12938 -30.48817 -29.78595 -28.34683 -26.60143 -26.12296 -24.66050 -22.69795 -21.81890 -21.29103 -21.11118 -19.71150 -18.22414 -17.53510 -16.63699 -16.16312 -16.02489 -15.44092 -15.30927 -15.13980 -14.67372 -14.37741 -14.17484 -13.82220 -13.66858 -13.10973 -12.80443 -12.71189 -12.49412 -12.33114 -12.19934 -12.11642 -11.84722 -11.57497 -11.50121 -11.40788 -11.20518 -11.12828 -11.01680 -10.90053 -10.74527 -10.49879 -10.38038 -10.21986 -10.14522 -9.91033 -9.26681 -9.14435 -8.71885 -8.38566 -8.04894 -7.78652 -7.41927 -5.95649 -4.04908 2.51585 2.60297 3.30199 3.38185 3.45699 3.61487 3.70184 3.99527 4.45177 4.73768 4.88328 4.99445 5.03693 5.07140 5.20534 5.26927 5.34449 5.44332 5.48957 5.67162 5.73902 5.76309 5.81085 5.83012 5.86279 5.92660 6.00767 6.03550 6.05089 6.11606 6.33425 6.39409 6.40459 6.47597 6.62609 6.72917 6.79801 7.08340 7.16820 7.21309 7.29051 7.34146 7.49721 7.56675 7.70822 7.95508 8.06939 8.18781 8.20145 8.37518 8.91934 9.21444 9.58059 10.98509 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003059 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.404669 B = 9150.689353 C =10018.090180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.635 5.635 3 C 0.118 3.882 4 C -0.132 4.132 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.074 3.926 8 O -0.577 6.577 9 C 0.525 3.475 10 O -0.525 6.525 11 C -0.136 4.136 12 C 0.087 3.913 13 H 0.036 0.964 14 C -0.468 4.468 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.377 0.623 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.259 0.741 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 11.936 -7.105 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.371 5.371 3 C -0.005 4.005 4 C -0.171 4.171 5 C -0.151 4.151 6 C -0.157 4.157 7 C -0.003 4.003 8 O -0.382 6.382 9 C 0.315 3.685 10 O -0.399 6.399 11 C -0.176 4.176 12 C 0.068 3.932 13 H 0.055 0.945 14 C -0.505 4.505 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.028 4.028 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.161 4.161 27 C -0.087 4.087 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.224 0.776 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.854 11.345 -7.064 13.666 hybrid contribution 0.637 0.505 1.365 1.589 sum -2.217 11.850 -5.698 13.334 Atomic orbital electron populations 1.21638 0.80402 1.02255 1.01401 1.48031 1.06448 1.05961 1.76703 1.21275 0.97940 0.85388 0.95923 1.21930 1.00275 0.96675 0.98172 1.21422 1.00907 0.97208 0.95607 1.21527 1.00749 0.95862 0.97605 1.22250 0.98699 0.96470 0.82910 1.86489 1.79956 1.44381 1.27419 1.21176 0.88291 0.85081 0.73923 1.90598 1.14323 1.87004 1.48006 1.21956 1.00562 0.91710 1.03395 1.17650 0.91984 0.86605 0.96977 0.94546 1.21019 0.93099 1.47014 0.89382 0.92265 1.24881 0.95003 0.95228 0.98893 1.69682 1.06734 1.51295 1.25255 0.86537 0.80639 0.77324 0.83630 1.19814 1.21224 1.21253 1.20352 0.93116 0.97112 0.92200 1.20899 0.99148 0.93348 1.01617 1.20797 0.95302 0.97186 1.02687 1.20762 0.95811 0.97956 1.02729 1.21042 0.99315 0.94424 1.01361 1.21348 0.94410 0.97827 0.95078 0.93134 0.92315 0.90881 0.91713 0.90215 0.91288 0.92159 0.91939 0.91527 0.91119 0.91379 0.93785 0.93608 0.77606 0.85032 0.93052 0.93056 0.87680 0.88113 0.88318 0.88103 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 10.25 59.85 0.61 1.77 16 2 N -0.64 -10.76 2.87 -181.57 -0.52 -11.28 16 3 C 0.12 1.71 5.41 -4.04 -0.02 1.69 16 4 C -0.13 -1.66 5.54 -26.73 -0.15 -1.81 16 5 C -0.11 -1.15 5.21 -26.73 -0.14 -1.29 16 6 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 7 C 0.07 0.65 7.05 37.16 0.26 0.92 16 8 O -0.58 -5.52 13.66 -35.23 -0.48 -6.00 16 9 C 0.52 11.25 7.42 -10.98 -0.08 11.17 16 10 O -0.53 -13.06 14.56 5.56 0.08 -12.98 16 11 C -0.14 -2.94 2.63 -27.88 -0.07 -3.01 16 12 C 0.09 2.11 1.97 -92.92 -0.18 1.93 16 13 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 14 C -0.47 -12.64 7.27 -34.44 -0.25 -12.89 16 15 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 16 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 17 N -0.89 -22.74 7.99 55.43 0.44 -22.30 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C -0.03 -0.63 4.69 -104.63 -0.49 -1.12 16 23 C -0.13 -2.85 9.71 -39.58 -0.38 -3.23 16 24 C -0.14 -2.75 10.05 -39.58 -0.40 -3.14 16 25 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 26 C -0.14 -2.85 10.05 -39.59 -0.40 -3.25 16 27 C -0.07 -1.50 7.45 -39.59 -0.30 -1.79 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 31 H 0.06 0.77 8.07 -51.92 -0.42 0.36 16 32 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 33 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.38 1.77 9.12 45.56 0.42 2.19 16 42 H 0.13 3.00 4.67 -51.93 -0.24 2.76 16 43 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 44 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 45 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 46 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 47 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 48 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 49 H 0.14 3.11 5.18 -52.48 -0.27 2.83 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -31.09 391.29 -9.72 -40.81 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.49 Total: 6.54 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.63 Total: -17.27 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: -0.08 Total: -33.58 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.40 Total: -18.98 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.09 -9.72 -40.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357172930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.425 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds