Wall clock time and date at job start Tue Mar 31 2020 13:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00484 * 2 1 4 4 C 1.53006 * 109.46963 * 270.00081 * 3 2 1 5 5 C 1.52998 * 109.47070 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46887 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46887 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47258 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00020 * 179.97438 * 2 1 3 10 10 O 1.21276 * 120.00117 * 180.02562 * 9 2 1 11 11 C 1.50703 * 119.99807 * 0.27569 * 9 2 1 12 12 C 1.53003 * 109.47252 * 179.72544 * 11 9 2 13 13 H 1.09000 * 109.46766 * 305.00272 * 12 11 9 14 14 C 1.50696 * 109.47252 * 65.00018 * 12 11 9 15 15 H 1.08000 * 120.00385 * 234.68635 * 14 12 11 16 16 C 1.37881 * 119.99687 * 54.67602 * 14 12 11 17 17 N 1.31512 * 120.00310 * 4.87974 * 16 14 12 18 18 Si 1.86805 * 120.00034 * 184.87267 * 16 14 12 19 19 H 1.48500 * 109.46886 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46877 * 120.00349 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00504 * 18 16 14 22 22 C 1.50699 * 109.47038 * 185.00387 * 12 11 9 23 23 C 1.38237 * 119.99708 * 151.49066 * 22 12 11 24 24 C 1.38231 * 119.99613 * 179.78835 * 23 22 12 25 25 C 1.38237 * 120.00335 * 0.43657 * 24 23 22 26 26 C 1.38237 * 119.99507 * 359.80955 * 25 24 23 27 27 C 1.38226 * 120.00167 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47267 * 270.00321 * 1 2 3 29 29 H 1.08999 * 109.46536 * 30.00819 * 1 2 3 30 30 H 1.09000 * 109.46983 * 149.99956 * 1 2 3 31 31 H 1.09007 * 109.47016 * 29.99172 * 3 2 1 32 32 H 1.09000 * 109.47837 * 149.99533 * 3 2 1 33 33 H 1.09007 * 109.46512 * 299.99400 * 4 3 2 34 34 H 1.09000 * 109.47292 * 59.99118 * 4 3 2 35 35 H 1.08996 * 109.47094 * 299.99757 * 5 4 3 36 36 H 1.09000 * 109.46994 * 59.99616 * 5 4 3 37 37 H 1.09002 * 109.47340 * 299.99596 * 6 5 4 38 38 H 1.09000 * 109.47211 * 60.00246 * 6 5 4 39 39 H 1.09001 * 109.47522 * 300.00111 * 7 6 5 40 40 H 1.09000 * 109.47518 * 60.00078 * 7 6 5 41 41 H 0.96694 * 114.00221 * 180.02562 * 8 7 6 42 42 H 1.08997 * 109.47212 * 299.72435 * 11 9 2 43 43 H 1.09002 * 109.46706 * 59.72934 * 11 9 2 44 44 H 0.96998 * 120.00643 * 179.97438 * 17 16 14 45 45 H 1.07997 * 120.00194 * 359.97438 * 23 22 12 46 46 H 1.08006 * 119.99942 * 180.27249 * 24 23 22 47 47 H 1.07994 * 120.00106 * 179.84074 * 25 24 23 48 48 H 1.08004 * 119.99611 * 179.97438 * 26 25 24 49 49 H 1.08007 * 120.00058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.2172 3.0355 -1.4426 6 6 3.4727 3.4768 -2.8851 7 6 4.2367 4.8024 -2.8852 8 8 4.4749 5.2149 -4.2325 9 6 2.1389 -1.1672 0.0005 10 8 3.3517 -1.1672 0.0010 11 6 1.3854 -2.4723 -0.0052 12 6 2.3796 -3.6353 -0.0102 13 1 3.0637 -3.5247 -0.8515 14 6 3.1624 -3.6326 1.2775 15 1 4.2420 -3.6170 1.2532 16 6 2.5002 -3.6498 2.4868 17 7 1.1906 -3.7654 2.5178 18 14 3.4634 -3.5091 4.0811 19 1 4.9118 -3.3901 3.7756 20 1 3.0146 -2.3054 4.8260 21 1 3.2296 -4.7194 4.9092 22 6 1.6301 -4.9363 -0.1398 23 6 2.2343 -6.0251 -0.7401 24 6 1.5485 -7.2197 -0.8550 25 6 0.2552 -7.3229 -0.3779 26 6 -0.3508 -6.2325 0.2178 27 6 0.3367 -5.0393 0.3367 28 1 -0.3633 0.0001 1.0276 29 1 -0.3632 0.8899 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1384 0.5139 33 1 3.0417 0.9505 -1.9563 34 1 1.5002 1.8405 -1.9565 35 1 2.6278 3.7950 -0.9290 36 1 4.1695 2.9056 -0.9286 37 1 4.0623 2.7172 -3.3985 38 1 2.5205 3.6067 -3.3995 39 1 3.6468 5.5618 -2.3720 40 1 5.1889 4.6730 -2.3707 41 1 4.9566 6.0498 -4.3088 42 1 0.7587 -2.5339 0.8845 43 1 0.7588 -2.5261 -0.8955 44 1 0.7247 -3.7779 3.3685 45 1 3.2433 -5.9433 -1.1165 46 1 2.0221 -8.0718 -1.3200 47 1 -0.2816 -8.2555 -0.4700 48 1 -1.3614 -6.3131 0.5902 49 1 -0.1370 -4.1872 0.8017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357172930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:54 Heat of formation + Delta-G solvation = -93.272564 kcal Electronic energy + Delta-G solvation = -27029.674760 eV Core-core repulsion = 23341.398960 eV Total energy + Delta-G solvation = -3688.275800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.83499 -39.69044 -38.25464 -37.04681 -35.96910 -35.31509 -32.98856 -31.64621 -31.33478 -29.91103 -27.93502 -27.65107 -25.97540 -24.28295 -23.13371 -22.67558 -22.02273 -21.36695 -19.77860 -18.29873 -18.24124 -17.89234 -17.11620 -16.96469 -16.79933 -16.59273 -16.22973 -15.52828 -15.30637 -15.26414 -15.11948 -14.74456 -14.30637 -13.94131 -13.79640 -13.59252 -13.53258 -13.37746 -13.31466 -13.12528 -13.04002 -12.79888 -12.71382 -12.68434 -12.32070 -12.15043 -12.13781 -11.86622 -11.83655 -11.68200 -11.48742 -11.06475 -11.03548 -10.88289 -10.56991 -10.23082 -9.44218 -9.39594 -9.11617 -7.94549 -6.10177 0.89078 1.00439 1.33517 1.37290 1.47973 2.04322 2.31142 2.44736 3.19238 3.31039 3.37773 3.87245 4.03208 4.09884 4.15749 4.27259 4.34257 4.40131 4.42288 4.47477 4.51824 4.52540 4.62867 4.65946 4.73505 4.77058 4.80136 4.85963 4.91016 4.94755 4.98967 5.02142 5.09244 5.14804 5.18711 5.33399 5.39411 5.40857 5.54100 5.63333 5.67789 5.86304 5.90052 5.95173 6.09663 6.36360 6.42595 6.58400 6.64888 6.83928 6.89547 7.51520 7.59934 8.94813 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.003059 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.404669 B = 9150.689353 C =10018.090180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.630 5.630 3 C 0.114 3.886 4 C -0.122 4.122 5 C -0.105 4.105 6 C -0.120 4.120 7 C 0.075 3.925 8 O -0.600 6.600 9 C 0.516 3.484 10 O -0.574 6.574 11 C -0.124 4.124 12 C 0.088 3.912 13 H 0.009 0.991 14 C -0.490 4.490 15 H 0.025 0.975 16 C 0.035 3.965 17 N -0.884 5.884 18 Si 0.929 3.071 19 H -0.289 1.289 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.053 4.053 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.148 4.148 26 C -0.146 4.146 27 C -0.080 4.080 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.397 0.603 42 H 0.124 0.876 43 H 0.071 0.929 44 H 0.262 0.738 45 H 0.100 0.900 46 H 0.132 0.868 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 12.413 -6.979 15.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.365 5.365 3 C -0.008 4.008 4 C -0.161 4.161 5 C -0.143 4.143 6 C -0.157 4.157 7 C -0.003 4.003 8 O -0.409 6.409 9 C 0.306 3.694 10 O -0.452 6.452 11 C -0.164 4.164 12 C 0.069 3.931 13 H 0.028 0.972 14 C -0.528 4.528 15 H 0.043 0.957 16 C -0.165 4.165 17 N -0.523 5.523 18 Si 0.757 3.243 19 H -0.214 1.214 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.053 4.053 23 C -0.171 4.171 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.164 4.164 27 C -0.098 4.098 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.247 0.753 42 H 0.142 0.858 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.119 0.881 46 H 0.150 0.850 47 H 0.155 0.845 48 H 0.146 0.854 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.413 11.861 -6.942 14.771 hybrid contribution 1.389 0.346 1.264 1.910 sum -4.024 12.208 -5.678 14.052 Atomic orbital electron populations 1.21904 0.77796 1.04234 1.02292 1.48062 1.08169 1.05485 1.74750 1.21474 0.97074 0.84984 0.97275 1.21820 1.00836 0.96943 0.96495 1.21346 1.00630 0.96393 0.95899 1.21493 1.00711 0.96313 0.97214 1.22244 0.99080 0.96059 0.82900 1.86431 1.80528 1.46012 1.27891 1.21227 0.87794 0.86468 0.73891 1.90572 1.16244 1.87864 1.50553 1.21753 0.99744 0.91144 1.03718 1.17531 0.92182 0.88774 0.94613 0.97222 1.20949 0.91725 1.48727 0.91408 0.95710 1.25216 0.95927 0.95218 1.00094 1.69760 1.06468 1.50531 1.25540 0.85957 0.78993 0.77642 0.81728 1.21428 1.20470 1.20509 1.20321 0.94047 0.96796 0.94156 1.21069 0.99445 0.94275 1.02327 1.21151 0.95638 0.97035 1.01949 1.21204 0.95511 0.99041 1.00856 1.21370 1.00437 0.93751 1.00816 1.21304 0.94091 0.98762 0.95664 0.92706 0.88468 0.90879 0.88039 0.93158 0.94805 0.90480 0.89290 0.92261 0.93337 0.91279 0.91732 0.93158 0.75289 0.85839 0.91128 0.92830 0.88134 0.85049 0.84542 0.85413 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.96 10.25 127.77 1.31 3.27 16 2 N -0.63 -21.21 2.87 -846.75 -2.43 -23.64 16 3 C 0.11 3.25 5.41 86.38 0.47 3.72 16 4 C -0.12 -3.02 5.54 30.60 0.17 -2.85 16 5 C -0.10 -2.01 5.21 30.59 0.16 -1.85 16 6 C -0.12 -2.35 5.58 30.59 0.17 -2.18 16 7 C 0.07 1.20 7.05 71.98 0.51 1.70 16 8 O -0.60 -10.74 13.66 -148.98 -2.04 -12.77 16 9 C 0.52 22.98 7.42 87.66 0.65 23.63 16 10 O -0.57 -30.49 14.56 -3.02 -0.04 -30.54 16 11 C -0.12 -5.50 2.63 29.85 0.08 -5.42 16 12 C 0.09 4.50 1.97 -12.29 -0.02 4.48 16 13 H 0.01 0.51 7.91 -2.39 -0.02 0.49 16 14 C -0.49 -27.94 7.27 25.60 0.19 -27.75 16 15 H 0.02 1.53 7.82 -2.91 -0.02 1.50 16 16 C 0.03 1.88 5.12 84.66 0.43 2.32 16 17 N -0.88 -45.29 7.99 21.45 0.17 -45.12 16 18 Si 0.93 45.01 29.54 68.60 2.03 47.04 16 19 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 22 C -0.05 -2.48 4.69 -19.87 -0.09 -2.57 16 23 C -0.15 -6.67 9.71 22.27 0.22 -6.45 16 24 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 25 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 26 C -0.15 -5.43 10.05 22.27 0.22 -5.21 16 27 C -0.08 -3.47 7.45 22.27 0.17 -3.30 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.66 8.07 -2.39 -0.02 1.64 16 30 H 0.07 1.81 6.43 -2.39 -0.02 1.79 16 31 H 0.10 2.14 8.07 -2.38 -0.02 2.12 16 32 H 0.05 1.74 7.42 -2.39 -0.02 1.72 16 33 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.40 3.13 9.12 -74.06 -0.68 2.46 16 42 H 0.12 5.72 4.67 -2.39 -0.01 5.71 16 43 H 0.07 2.78 7.40 -2.39 -0.02 2.76 16 44 H 0.26 12.89 8.31 -92.71 -0.77 12.12 16 45 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 46 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 47 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 48 H 0.13 4.02 8.06 -2.91 -0.02 3.99 16 49 H 0.13 5.81 5.18 -2.91 -0.02 5.79 16 Total: -1.00 -70.66 391.29 3.00 -67.65 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.25 Total: 25.62 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 5.07 Total: -28.25 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.26 Total: -68.76 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -2.08 Total: -43.31 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.66 3.00 -67.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357172930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.620 kcal (2) G-P(sol) polarization free energy of solvation -70.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds