Wall clock time and date at job start Tue Mar 31 2020 12:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99969 * 2 1 4 4 C 1.50700 * 109.47223 * 125.00039 * 3 2 1 5 5 C 1.38170 * 120.02117 * 265.01956 * 4 3 2 6 6 C 1.38251 * 120.05325 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.10830 * 359.74481 * 6 5 4 8 8 C 1.38122 * 120.05799 * 0.50875 * 7 6 5 9 9 C 1.38706 * 120.03141 * 84.99463 * 4 3 2 10 10 O 1.35902 * 120.05584 * 0.02562 * 9 4 3 11 11 C 1.42903 * 117.00118 * 180.02562 * 10 9 4 12 12 C 1.52997 * 109.47263 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.46988 * 304.99940 * 12 11 10 14 14 O 1.42905 * 109.46873 * 64.99568 * 12 11 10 15 15 C 1.52996 * 109.47034 * 184.99756 * 12 11 10 16 16 N 1.46899 * 109.47032 * 180.02562 * 15 12 11 17 17 C 1.46897 * 110.99987 * 293.95279 * 16 15 12 18 18 C 1.52999 * 109.47260 * 164.04343 * 17 16 15 19 19 C 1.46900 * 110.99963 * 169.99726 * 16 15 12 20 20 C 1.50694 * 109.47650 * 284.31363 * 19 16 15 21 21 H 1.08010 * 119.99714 * 4.65864 * 20 19 16 22 22 C 1.37872 * 120.00606 * 184.65770 * 20 19 16 23 23 N 1.31517 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00497 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46878 * 89.99955 * 24 22 20 26 26 H 1.48498 * 109.47494 * 210.00156 * 24 22 20 27 27 H 1.48506 * 109.47143 * 330.00578 * 24 22 20 28 28 H 1.08007 * 120.00034 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00208 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.99553 * 179.97438 * 2 1 3 31 31 H 1.08991 * 109.47204 * 4.99488 * 3 2 1 32 32 H 1.09001 * 109.46566 * 244.99163 * 3 2 1 33 33 H 1.07992 * 119.97502 * 359.97438 * 5 4 3 34 34 H 1.07987 * 119.94507 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.97079 * 180.27778 * 7 6 5 36 36 H 1.08000 * 120.02929 * 179.77137 * 8 7 6 37 37 H 1.09003 * 109.46670 * 300.00372 * 11 10 9 38 38 H 1.08999 * 109.47400 * 59.99126 * 11 10 9 39 39 H 0.96698 * 114.00011 * 60.00335 * 14 12 11 40 40 H 1.09002 * 109.47187 * 299.99676 * 15 12 11 41 41 H 1.08998 * 109.47409 * 59.99987 * 15 12 11 42 42 H 1.09001 * 109.47091 * 284.04530 * 17 16 15 43 43 H 1.08998 * 109.47325 * 44.04697 * 17 16 15 44 44 H 1.08999 * 109.47232 * 59.46327 * 18 17 16 45 45 H 1.08997 * 109.47091 * 179.46360 * 18 17 16 46 46 H 1.08996 * 109.47381 * 299.46644 * 18 17 16 47 47 H 1.08995 * 109.47247 * 44.31772 * 19 16 15 48 48 H 1.09006 * 109.47211 * 164.31531 * 19 16 15 49 49 H 0.96999 * 120.00138 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1638 5 6 2.6457 1.9282 2.3530 6 6 3.5228 1.9534 3.4213 7 6 4.7751 1.3784 3.3044 8 6 5.1564 0.7865 2.1161 9 6 4.2778 0.7599 1.0424 10 8 4.6487 0.1736 -0.1262 11 6 5.9581 -0.3965 -0.1791 12 6 6.1935 -1.0057 -1.5627 13 1 5.3998 -1.7187 -1.7855 14 8 6.1924 0.0311 -2.5461 15 6 7.5442 -1.7241 -1.5804 16 7 7.7705 -2.3086 -2.9090 17 6 6.8022 -3.3781 -3.1855 18 6 6.7980 -3.6873 -4.6839 19 6 9.1489 -2.7994 -3.0403 20 6 10.0820 -1.6317 -3.2315 21 1 9.7016 -0.6222 -3.1782 22 6 11.4211 -1.8518 -3.4745 23 7 11.8842 -3.0811 -3.5399 24 14 12.5777 -0.4043 -3.7123 25 1 13.1378 0.0027 -2.3985 26 1 13.6838 -0.7985 -4.6213 27 1 11.8308 0.7337 -4.3059 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 1.6668 2.3743 2.4480 34 1 3.2280 2.4190 4.3500 35 1 5.4569 1.3954 4.1418 36 1 6.1358 0.3407 2.0242 37 1 6.7001 0.3799 0.0076 38 1 6.0469 -1.1738 0.5798 39 1 6.8747 0.7027 -2.4103 40 1 8.3380 -1.0111 -1.3576 41 1 7.5450 -2.5149 -0.8302 42 1 7.0816 -4.2736 -2.6305 43 1 5.8073 -3.0558 -2.8783 44 1 7.7952 -4.0004 -4.9931 45 1 6.0864 -4.4874 -4.8878 46 1 6.5094 -2.7944 -5.2384 47 1 9.4282 -3.3438 -2.1383 48 1 9.2174 -3.4641 -3.9016 49 1 12.8263 -3.2360 -3.7112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362171653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:37 Heat of formation + Delta-G solvation = -65.380865 kcal Electronic energy + Delta-G solvation = -26770.571820 eV Core-core repulsion = 23083.505494 eV Total energy + Delta-G solvation = -3687.066326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30381 -39.64062 -38.34782 -36.95915 -36.03690 -34.72568 -32.48905 -32.07090 -31.34252 -30.60875 -28.74701 -27.23715 -26.31925 -24.43564 -23.60849 -22.77715 -22.21720 -21.32479 -20.64325 -18.99425 -18.56564 -17.77797 -17.51120 -16.93929 -16.79162 -16.42477 -15.98795 -15.89997 -15.78269 -15.59407 -15.20759 -14.97063 -14.70271 -14.46048 -14.22232 -14.09903 -13.79364 -13.41305 -13.25940 -13.15895 -12.92906 -12.79351 -12.67439 -12.59437 -12.42386 -12.33703 -12.11998 -12.05230 -11.98361 -11.90993 -11.71733 -11.45609 -11.17907 -10.90111 -10.56759 -10.21321 -9.77689 -9.06781 -8.96530 -8.18081 -6.27577 0.37319 0.50777 1.41079 1.43147 1.45103 1.54356 2.07491 2.41308 2.82490 3.12725 3.24379 3.55945 3.78483 3.84357 3.86691 3.96516 4.08209 4.13155 4.22027 4.25687 4.28769 4.31308 4.34062 4.46599 4.48717 4.51435 4.68274 4.69946 4.74697 4.77457 4.88224 4.94913 5.02955 5.08181 5.10013 5.15603 5.24175 5.28743 5.38904 5.41710 5.52352 5.61294 5.68417 5.76069 5.89481 5.91798 6.09770 6.37818 6.46778 6.62505 6.86403 6.89927 7.41783 8.92439 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014742 B = 0.002852 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.936668 B = 9816.090761 C =11051.891166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C -0.043 4.043 4 C -0.126 4.126 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.091 4.091 8 C -0.221 4.221 9 C 0.111 3.889 10 O -0.314 6.314 11 C 0.035 3.965 12 C 0.130 3.870 13 H 0.099 0.901 14 O -0.554 6.554 15 C 0.038 3.962 16 N -0.532 5.532 17 C 0.046 3.954 18 C -0.137 4.137 19 C 0.206 3.794 20 C -0.515 4.515 21 H 0.064 0.936 22 C 0.000 4.000 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.265 1.265 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.381 0.619 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.018 0.982 43 H 0.083 0.917 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.054 0.946 47 H -0.040 1.040 48 H 0.012 0.988 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.248 8.898 13.454 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C -0.080 4.080 4 C -0.126 4.126 5 C -0.101 4.101 6 C -0.178 4.178 7 C -0.109 4.109 8 C -0.240 4.240 9 C 0.066 3.934 10 O -0.227 6.227 11 C -0.041 4.041 12 C 0.070 3.930 13 H 0.117 0.883 14 O -0.360 6.360 15 C -0.091 4.091 16 N -0.256 5.256 17 C -0.081 4.081 18 C -0.194 4.194 19 C 0.080 3.920 20 C -0.553 4.553 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.578 5.578 24 Si 0.791 3.209 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.189 1.189 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.229 0.771 40 H 0.093 0.907 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.095 0.905 46 H 0.073 0.927 47 H -0.023 1.023 48 H 0.030 0.970 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.764 8.791 12.641 25.850 hybrid contribution 2.069 -0.371 0.669 2.206 sum -18.695 8.420 13.310 24.445 Atomic orbital electron populations 1.23986 0.95208 1.02833 1.00494 1.22806 0.96263 0.97772 1.00480 1.19546 0.96426 0.96292 0.95692 1.19373 0.92860 1.02755 0.97648 1.21179 1.00388 0.97326 0.91163 1.21377 0.94157 1.02259 0.99984 1.21264 0.97062 0.95681 0.96850 1.21483 1.00813 1.07095 0.94600 1.19180 0.94207 0.94585 0.85454 1.86100 1.33601 1.70398 1.32634 1.23530 0.83033 0.98447 0.99097 1.21756 0.96395 0.89284 0.85579 0.88298 1.86558 1.58873 1.38315 1.52267 1.22527 0.97275 0.98844 0.90407 1.61958 1.03961 1.32113 1.27611 1.22157 0.96421 0.92294 0.97264 1.21678 1.00876 1.01417 0.95446 1.19449 0.84350 0.94604 0.93615 1.21462 0.92628 0.93671 1.47567 0.91794 1.25885 1.00111 0.98479 0.95237 1.70085 1.15039 1.21585 1.51063 0.85429 0.78058 0.79260 0.78154 1.19762 1.21137 1.18887 0.87124 0.87783 0.88995 0.89040 0.91268 0.83368 0.83452 0.83893 0.85020 0.90685 0.90236 0.77094 0.90734 0.94655 0.96368 0.89927 0.94867 0.90452 0.92675 1.02250 0.97023 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 14.32 67.78 0.97 -1.99 16 2 C -0.16 -3.09 9.50 25.65 0.24 -2.84 16 3 C -0.04 -0.85 5.51 29.10 0.16 -0.69 16 4 C -0.13 -2.71 5.13 -19.77 -0.10 -2.81 16 5 C -0.08 -1.41 9.68 22.26 0.22 -1.20 16 6 C -0.16 -2.52 10.04 22.28 0.22 -2.29 16 7 C -0.09 -1.59 10.04 22.25 0.22 -1.37 16 8 C -0.22 -4.74 9.04 22.37 0.20 -4.54 16 9 C 0.11 2.70 6.66 22.51 0.15 2.85 16 10 O -0.31 -8.40 9.24 -87.80 -0.81 -9.22 16 11 C 0.03 0.85 4.37 71.98 0.31 1.17 16 12 C 0.13 3.81 3.16 30.59 0.10 3.90 16 13 H 0.10 2.94 6.28 -2.39 -0.02 2.92 16 14 O -0.55 -18.06 13.17 -144.34 -1.90 -19.96 16 15 C 0.04 1.35 4.45 86.30 0.38 1.73 16 16 N -0.53 -22.51 4.25 -900.82 -3.83 -26.33 16 17 C 0.05 1.68 5.55 86.30 0.48 2.16 16 18 C -0.14 -4.78 9.99 71.98 0.72 -4.06 16 19 C 0.21 10.81 4.59 85.56 0.39 11.21 16 20 C -0.51 -28.65 8.61 25.60 0.22 -28.43 16 21 H 0.06 3.46 7.66 -2.91 -0.02 3.44 16 22 C 0.00 0.03 5.46 84.65 0.46 0.49 16 23 N -0.94 -56.18 13.29 21.45 0.28 -55.90 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.90 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 27 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 28 H 0.11 1.37 7.84 -2.91 -0.02 1.35 16 29 H 0.10 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.09 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.09 1.41 7.70 -2.39 -0.02 1.40 16 32 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 33 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.15 1.49 8.06 -2.92 -0.02 1.47 16 35 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.13 2.59 6.30 -2.91 -0.02 2.57 16 37 H 0.07 1.70 7.66 -2.39 -0.02 1.68 16 38 H 0.08 1.74 7.66 -2.39 -0.02 1.72 16 39 H 0.38 10.64 9.05 -74.06 -0.67 9.97 16 40 H 0.07 2.79 7.32 -2.39 -0.02 2.77 16 41 H 0.04 1.19 8.12 -2.39 -0.02 1.17 16 42 H 0.02 0.66 8.05 -2.39 -0.02 0.64 16 43 H 0.08 2.60 5.94 -2.39 -0.01 2.59 16 44 H 0.03 1.32 6.52 -2.39 -0.02 1.31 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 47 H -0.04 -2.27 8.00 -2.39 -0.02 -2.29 16 48 H 0.01 0.67 6.24 -2.38 -0.01 0.66 16 49 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -67.57 399.81 1.38 -66.19 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.25 Total: 26.03 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 5.36 Total: -26.72 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.54 Total: -82.23 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -2.71 Total: -29.18 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.57 1.38 -66.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362171653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.810 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds