Wall clock time and date at job start Tue Mar 31 2020 13:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45199 * 109.47115 * 2 1 4 4 C 1.34233 * 116.99707 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00463 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99811 * 179.97438 * 4 3 2 7 7 H 1.08992 * 109.47166 * 300.00438 * 6 4 3 8 8 C 1.53004 * 109.46862 * 60.00292 * 6 4 3 9 9 C 1.50702 * 109.47102 * 185.00040 * 8 6 4 10 10 C 1.38229 * 119.99619 * 269.72718 * 9 8 6 11 11 C 1.38246 * 119.99690 * 179.76271 * 10 9 8 12 12 C 1.38230 * 119.99745 * 0.50802 * 11 10 9 13 13 C 1.38238 * 120.00201 * 359.74320 * 12 11 10 14 14 C 1.38224 * 119.99918 * 0.02562 * 13 12 11 15 15 N 1.46900 * 109.46974 * 180.02562 * 6 4 3 16 16 C 1.46900 * 110.99988 * 85.00600 * 15 6 4 17 17 C 1.52996 * 109.47018 * 180.02562 * 16 15 6 18 18 C 1.53000 * 109.46934 * 299.99307 * 17 16 15 19 19 C 1.52996 * 109.47716 * 59.99377 * 17 16 15 20 20 C 1.50700 * 109.47023 * 179.97438 * 17 16 15 21 21 H 1.08002 * 120.00172 * 1.23929 * 20 17 16 22 22 C 1.37879 * 120.00005 * 181.22784 * 20 17 16 23 23 N 1.31513 * 120.00224 * 194.12015 * 22 20 17 24 24 Si 1.86805 * 119.99923 * 14.12476 * 22 20 17 25 25 H 1.48498 * 109.47180 * 84.52495 * 24 22 20 26 26 H 1.48500 * 109.46881 * 204.52674 * 24 22 20 27 27 H 1.48499 * 109.47083 * 324.52907 * 24 22 20 28 28 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47148 * 299.99952 * 1 2 3 30 30 H 1.08997 * 109.47470 * 59.99825 * 1 2 3 31 31 H 1.09004 * 109.47148 * 240.00048 * 2 1 3 32 32 H 1.08997 * 109.47470 * 120.00175 * 2 1 3 33 33 H 1.09004 * 109.47005 * 304.99648 * 8 6 4 34 34 H 1.08996 * 109.47426 * 64.99775 * 8 6 4 35 35 H 1.07997 * 120.00532 * 359.97438 * 10 9 8 36 36 H 1.08000 * 120.00018 * 180.22842 * 11 10 9 37 37 H 1.08006 * 119.99874 * 179.71934 * 12 11 10 38 38 H 1.07997 * 119.99667 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.00093 * 179.97438 * 14 13 12 40 40 H 1.00904 * 110.99797 * 208.95557 * 15 6 4 41 41 H 1.08996 * 109.47285 * 59.99435 * 16 15 6 42 42 H 1.09010 * 109.46351 * 299.99485 * 16 15 6 43 43 H 1.09005 * 109.47299 * 69.52711 * 18 17 16 44 44 H 1.09002 * 109.47253 * 189.53057 * 18 17 16 45 45 H 1.09001 * 109.47140 * 309.52987 * 18 17 16 46 46 H 1.09003 * 109.46708 * 60.00075 * 19 17 16 47 47 H 1.08996 * 109.47444 * 180.02562 * 19 17 16 48 48 H 1.08999 * 109.47046 * 300.00419 * 19 17 16 49 49 H 0.97000 * 120.00247 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5844 3.4693 -0.8911 8 6 3.4497 3.6847 1.2481 9 6 3.9237 5.1139 1.1872 10 6 5.1469 5.4599 1.7302 11 6 5.5840 6.7701 1.6700 12 6 4.7932 7.7359 1.0762 13 6 3.5677 7.3907 0.5378 14 6 3.1327 6.0799 0.5938 15 7 5.3877 2.8605 -0.0023 16 6 5.9061 2.7135 -1.3689 17 6 7.4336 2.6363 -1.3293 18 6 7.9930 3.9171 -0.7068 19 6 7.8619 1.4316 -0.4890 20 6 7.9654 2.4849 -2.7312 21 1 7.2835 2.4676 -3.5686 22 6 9.3226 2.3687 -2.9450 23 7 9.8124 2.5151 -4.1566 24 14 10.4656 2.0032 -1.5134 25 1 10.5111 0.5377 -1.2780 26 1 11.8299 2.4961 -1.8309 27 1 9.9644 2.6851 -0.2931 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3608 3.6648 1.2944 34 1 3.8599 3.2033 2.1358 35 1 5.7627 4.7063 2.1984 36 1 6.5414 7.0398 2.0909 37 1 5.1327 8.7603 1.0332 38 1 2.9497 8.1454 0.0743 39 1 2.1750 5.8102 0.1736 40 1 5.7923 3.6647 0.4534 41 1 5.6006 3.5715 -1.9676 42 1 5.5079 1.8007 -1.8122 43 1 7.7486 3.9417 0.3552 44 1 9.0757 3.9387 -0.8311 45 1 7.5532 4.7834 -1.2009 46 1 7.4634 0.5192 -0.9326 47 1 8.9501 1.3769 -0.4605 48 1 7.4772 1.5407 0.5250 49 1 10.7671 2.4330 -4.3071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419358356.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:52 Heat of formation + Delta-G solvation = -70.032644 kcal Electronic energy + Delta-G solvation = -28003.154078 eV Core-core repulsion = 24315.886036 eV Total energy + Delta-G solvation = -3687.268042 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65339 -40.26651 -38.94910 -37.58242 -36.39998 -34.11660 -32.70432 -32.59533 -31.73597 -29.83776 -27.95348 -27.13034 -26.12826 -25.76785 -23.74465 -23.36177 -22.16265 -21.43465 -20.65434 -18.77941 -18.15172 -17.84912 -17.46746 -17.34309 -17.18881 -16.38575 -16.29425 -15.82059 -15.49504 -15.04781 -14.96929 -14.82044 -14.54730 -14.35458 -14.17533 -13.91541 -13.73935 -13.70527 -13.65275 -13.55675 -13.09018 -12.93605 -12.81419 -12.49252 -12.40827 -12.28723 -12.05293 -11.96015 -11.87675 -11.78332 -11.66409 -11.48477 -11.32005 -10.97035 -10.58705 -10.34106 -9.78201 -9.60356 -9.42441 -8.30338 -6.29095 0.43396 0.55210 1.25402 1.34892 1.37504 1.48549 1.61594 2.34579 2.90366 3.06370 3.19089 3.61446 3.89373 3.94550 4.02371 4.04587 4.12571 4.14586 4.22246 4.23159 4.35031 4.36785 4.39006 4.49814 4.55255 4.68050 4.75569 4.84379 4.86573 4.87528 4.90410 4.93291 4.95013 5.04748 5.16000 5.17009 5.18772 5.22428 5.27639 5.48134 5.53454 5.62199 5.67777 5.69297 5.73412 5.82367 5.95609 6.16871 6.30975 6.45268 6.75567 6.86253 7.35552 8.86889 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.005038 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3135.058323 B = 5556.215637 C = 7947.631919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.516 6.516 6 C 0.104 3.896 7 H 0.086 0.914 8 C -0.066 4.066 9 C -0.099 4.099 10 C -0.130 4.130 11 C -0.126 4.126 12 C -0.129 4.129 13 C -0.126 4.126 14 C -0.120 4.120 15 N -0.671 5.671 16 C 0.101 3.899 17 C 0.037 3.963 18 C -0.136 4.136 19 C -0.126 4.126 20 C -0.513 4.513 21 H 0.027 0.973 22 C 0.020 3.980 23 N -0.946 5.946 24 Si 0.941 3.059 25 H -0.290 1.290 26 H -0.311 1.311 27 H -0.210 1.210 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.359 0.641 41 H 0.019 0.981 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.066 0.934 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.352 6.692 15.711 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.304 3.696 5 O -0.403 6.403 6 C -0.008 4.008 7 H 0.103 0.897 8 C -0.104 4.104 9 C -0.099 4.099 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.147 4.147 13 C -0.144 4.144 14 C -0.138 4.138 15 N -0.309 5.309 16 C -0.028 4.028 17 C 0.036 3.964 18 C -0.193 4.193 19 C -0.183 4.183 20 C -0.551 4.551 21 H 0.046 0.954 22 C -0.177 4.177 23 N -0.586 5.586 24 Si 0.772 3.228 25 H -0.218 1.218 26 H -0.241 1.241 27 H -0.134 1.134 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.185 0.815 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.048 0.952 47 H 0.042 0.958 48 H 0.085 0.915 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.014 5.716 15.746 25.341 hybrid contribution 0.991 0.021 -0.778 1.260 sum -18.023 5.737 14.968 24.120 Atomic orbital electron populations 1.21800 0.89926 1.04299 1.03896 1.23249 0.97303 0.79517 1.02088 1.86476 1.23655 1.33382 1.84057 1.24058 0.80619 0.92887 0.72030 1.90677 1.61125 1.43723 1.44785 1.21054 0.89743 0.88430 1.01555 0.89695 1.20661 1.03262 0.90868 0.95601 1.19823 0.95358 0.94965 0.99740 1.21314 0.96009 0.97145 1.00369 1.21419 1.00394 0.93131 0.99445 1.21487 0.94834 1.00361 0.98029 1.21454 0.96763 0.96727 0.99428 1.21325 1.00478 0.93021 0.98997 1.60058 1.03185 1.48460 1.19203 1.21663 0.95497 0.98126 0.87465 1.18440 0.91897 0.92966 0.93083 1.22156 1.00507 0.97684 0.98960 1.22051 0.97582 0.98628 1.00009 1.21145 0.92086 1.49724 0.92155 0.95431 1.25753 0.99748 0.94291 0.97934 1.70100 1.13604 1.51095 1.23786 0.86375 0.75949 0.78316 0.82206 1.21794 1.24090 1.13443 0.88436 0.90639 0.91356 0.92493 0.91416 0.86982 0.89333 0.85453 0.84772 0.84449 0.84129 0.84309 0.81503 0.96290 0.94030 0.92242 0.93918 0.93935 0.95210 0.95757 0.91495 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.05 1.08 6.19 71.98 0.45 1.53 16 3 O -0.36 -8.88 10.03 -51.45 -0.52 -9.39 16 4 C 0.46 14.08 7.14 71.24 0.51 14.59 16 5 O -0.52 -19.90 15.67 21.96 0.34 -19.56 16 6 C 0.10 2.83 2.55 44.17 0.11 2.94 16 7 H 0.09 2.27 7.80 -2.39 -0.02 2.25 16 8 C -0.07 -1.33 4.94 29.85 0.15 -1.18 16 9 C -0.10 -2.01 4.83 -19.87 -0.10 -2.11 16 10 C -0.13 -2.76 8.04 22.27 0.18 -2.58 16 11 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 12 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 13 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 14 C -0.12 -2.21 9.70 22.27 0.22 -2.00 16 15 N -0.67 -22.22 5.06 -495.44 -2.51 -24.72 16 16 C 0.10 4.22 4.26 86.30 0.37 4.59 16 17 C 0.04 1.74 0.57 -52.93 -0.03 1.71 16 18 C -0.14 -5.60 7.24 71.98 0.52 -5.08 16 19 C -0.13 -5.74 7.54 71.98 0.54 -5.20 16 20 C -0.51 -29.83 8.62 25.60 0.22 -29.61 16 21 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 22 C 0.02 1.18 5.32 84.66 0.45 1.63 16 23 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 24 Si 0.94 46.38 22.79 68.60 1.56 47.94 16 25 H -0.29 -14.36 7.10 99.48 0.71 -13.66 16 26 H -0.31 -15.40 7.11 99.48 0.71 -14.69 16 27 H -0.21 -9.10 4.65 99.48 0.46 -8.63 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 33 H 0.11 1.77 7.94 -2.39 -0.02 1.75 16 34 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 35 H 0.13 2.59 7.55 -2.91 -0.02 2.56 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.36 10.79 3.79 -89.69 -0.34 10.45 16 41 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 42 H 0.04 1.92 7.62 -2.38 -0.02 1.90 16 43 H 0.06 2.04 7.06 -2.38 -0.02 2.02 16 44 H 0.04 1.86 4.30 -2.39 -0.01 1.85 16 45 H 0.04 1.71 8.12 -2.39 -0.02 1.69 16 46 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.02 1.12 2.26 -2.39 -0.01 1.11 16 48 H 0.07 2.71 7.60 -2.39 -0.02 2.70 16 49 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -73.52 381.27 4.53 -68.99 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.35 Total: 25.19 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 5.00 Total: -28.23 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.21 Total: -84.95 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.17 Total: -28.95 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.56 Total: 47.94 kcal Total: -73.52 4.53 -68.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419358356.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.043 kcal (2) G-P(sol) polarization free energy of solvation -73.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds