Wall clock time and date at job start Tue Mar 31 2020 12:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47133 * 2 1 4 4 C 1.52993 * 109.47204 * 119.99608 * 2 1 3 5 5 O 1.42903 * 109.46844 * 65.00635 * 4 2 1 6 6 C 1.42905 * 114.00151 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.47309 * 29.98836 * 6 5 4 8 8 C 1.53008 * 109.46461 * 269.99470 * 6 5 4 9 9 C 1.50695 * 109.47198 * 149.99481 * 6 5 4 10 10 O 1.21276 * 120.00241 * 4.99747 * 9 6 5 11 11 N 1.34777 * 119.99779 * 184.99696 * 9 6 5 12 12 C 1.46494 * 120.00188 * 180.02562 * 11 9 6 13 13 H 1.09000 * 109.47081 * 325.00162 * 12 11 9 14 14 C 1.53001 * 109.47302 * 205.00083 * 12 11 9 15 15 C 1.50701 * 109.47232 * 64.99671 * 14 12 11 16 16 H 1.08001 * 119.99717 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99578 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47103 * 89.99714 * 19 17 15 21 21 H 1.48504 * 109.47065 * 209.99608 * 19 17 15 22 22 H 1.48497 * 109.47228 * 329.99836 * 19 17 15 23 23 C 1.50703 * 109.47581 * 84.99858 * 12 11 9 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 12 11 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 12 11 29 29 H 1.09009 * 109.46924 * 60.00057 * 1 2 3 30 30 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47060 * 299.99921 * 1 2 3 32 32 H 1.09000 * 109.47513 * 239.99981 * 2 1 3 33 33 H 1.09000 * 109.47035 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47032 * 299.99976 * 3 2 1 35 35 H 1.09000 * 109.46937 * 59.99628 * 3 2 1 36 36 H 1.08998 * 109.47439 * 305.00344 * 4 2 1 37 37 H 1.09000 * 109.47240 * 184.99570 * 4 2 1 38 38 H 1.09005 * 109.46452 * 179.97438 * 8 6 5 39 39 H 1.08996 * 109.46841 * 299.99652 * 8 6 5 40 40 H 1.08996 * 109.46858 * 60.00122 * 8 6 5 41 41 H 0.97005 * 119.99889 * 359.97438 * 11 9 6 42 42 H 1.09007 * 109.47213 * 184.99910 * 14 12 11 43 43 H 1.08998 * 109.47120 * 304.99384 * 14 12 11 44 44 H 0.97007 * 120.00057 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.99730 * 359.97438 * 24 23 12 46 46 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 48 48 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 49 49 H 1.07997 * 120.00455 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 8 1.6620 -2.0981 1.1920 6 6 2.0914 -2.8660 2.3180 7 1 2.1384 -2.2251 3.1984 8 6 3.4776 -3.4502 2.0381 9 6 1.1143 -3.9866 2.5639 10 8 0.1961 -4.1706 1.7933 11 7 1.2608 -4.7843 3.6403 12 6 0.3113 -5.8740 3.8791 13 1 -0.6836 -5.5661 3.5574 14 6 0.2838 -6.2086 5.3719 15 6 -0.2587 -5.0314 6.1406 16 1 -0.5547 -4.1345 5.6168 17 6 -0.3782 -5.0998 7.5125 18 7 -0.8521 -4.0727 8.1833 19 14 0.1331 -6.6514 8.4184 20 1 1.5658 -6.5544 8.7966 21 1 -0.6929 -6.8046 9.6429 22 1 -0.0672 -7.8287 7.5357 23 6 0.7369 -7.0913 3.0993 24 6 -0.2115 -7.8751 2.4692 25 6 0.1791 -8.9913 1.7535 26 6 1.5181 -9.3234 1.6671 27 6 2.4667 -8.5389 2.2961 28 6 2.0760 -7.4238 3.0137 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6054 -0.2616 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 3.8053 -4.0356 2.8972 39 1 3.4307 -4.0912 1.1578 40 1 4.1843 -2.6397 1.8603 41 1 1.9954 -4.6374 4.2565 42 1 -0.3546 -7.0765 5.5380 43 1 1.2948 -6.4307 5.7131 44 1 -0.9358 -4.1206 9.1485 45 1 -1.2577 -7.6152 2.5361 46 1 -0.5619 -9.6039 1.2615 47 1 1.8230 -10.1980 1.1116 48 1 3.5129 -8.7985 2.2290 49 1 2.8170 -6.8115 3.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533048947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:00 Heat of formation + Delta-G solvation = -80.276873 kcal Electronic energy + Delta-G solvation = -27309.833532 eV Core-core repulsion = 23622.121267 eV Total energy + Delta-G solvation = -3687.712265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88186 -38.84589 -37.74902 -35.39032 -34.96955 -32.75279 -31.88145 -30.62578 -30.29494 -29.24119 -27.19567 -26.28561 -25.29476 -23.64183 -22.30860 -21.77875 -20.53529 -20.17021 -19.66020 -17.27494 -16.94873 -16.82882 -16.29012 -15.73981 -15.44797 -15.00499 -14.81062 -14.34338 -14.25090 -14.00529 -13.81701 -13.32923 -13.28735 -13.08252 -12.89643 -12.57765 -12.55693 -12.41614 -12.30217 -12.26653 -12.00341 -11.94786 -11.46295 -11.29193 -11.10146 -11.07356 -10.92094 -10.76108 -10.62807 -10.51203 -10.25147 -9.89538 -9.75844 -9.37151 -9.08626 -8.65331 -8.61236 -8.48345 -8.29618 -6.13439 -4.13332 1.67947 1.71169 3.10834 3.19674 3.23088 3.32590 3.35717 4.02816 4.19706 4.35998 4.75260 4.79393 4.94981 5.03879 5.04557 5.17695 5.18564 5.19428 5.23792 5.28738 5.33458 5.40453 5.44566 5.49666 5.59229 5.62699 5.73451 5.79984 5.81478 5.83799 5.85774 5.98022 6.04231 6.07804 6.20892 6.23419 6.30879 6.39204 6.41935 6.73312 6.76548 6.80145 6.91974 7.03955 7.15372 7.30711 7.35968 7.62899 8.08285 8.41707 8.76087 8.92356 9.47390 10.99300 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009276 B = 0.004169 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.779469 B = 6714.965375 C = 8813.477184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.145 4.145 4 C 0.062 3.938 5 O -0.354 6.354 6 C 0.070 3.930 7 H 0.086 0.914 8 C -0.167 4.167 9 C 0.515 3.485 10 O -0.527 6.527 11 N -0.700 5.700 12 C 0.196 3.804 13 H 0.092 0.908 14 C -0.013 4.013 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.076 4.076 24 C -0.107 4.107 25 C -0.122 4.122 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.109 4.109 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.400 0.600 42 H 0.034 0.966 43 H 0.019 0.981 44 H 0.264 0.736 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.859 1.325 -13.590 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.015 4.015 5 O -0.272 6.272 6 C 0.009 3.991 7 H 0.104 0.896 8 C -0.225 4.225 9 C 0.299 3.701 10 O -0.403 6.403 11 N -0.351 5.351 12 C 0.092 3.908 13 H 0.110 0.890 14 C -0.051 4.051 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.140 4.140 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.235 0.765 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.133 0.867 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.021 1.197 -14.114 16.793 hybrid contribution 0.791 -0.566 1.255 1.588 sum 9.812 0.631 -12.859 16.187 Atomic orbital electron populations 1.21800 0.94345 1.03067 1.01169 1.21064 0.97050 0.95302 0.97737 1.21792 1.00852 0.95411 1.02224 1.22691 0.98217 0.82136 0.98410 1.88023 1.78363 1.19642 1.41207 1.21895 0.93351 0.93112 0.90781 0.89629 1.22203 0.95121 1.01873 1.03300 1.20193 0.85680 0.82713 0.81468 1.90673 1.32720 1.71017 1.45885 1.45819 1.31616 1.31836 1.25787 1.19955 0.92739 0.81924 0.96192 0.88975 1.19875 0.97499 0.98533 0.89173 1.21020 1.42937 1.00250 0.91698 0.90612 1.24982 0.94562 0.95938 0.97581 1.69907 1.45699 1.30263 1.07735 0.86857 0.78761 0.84557 0.79623 1.20267 1.21309 1.18902 1.20572 0.93576 0.97025 0.96550 1.21048 0.99637 0.94979 0.96887 1.21062 0.95939 0.97373 0.99635 1.21018 0.93383 0.99886 1.00878 1.21048 0.99014 0.95739 0.98521 1.20912 0.95666 0.96981 0.99174 0.93045 0.91267 0.92863 0.90476 0.92661 0.92115 0.92435 0.93094 0.93460 0.90934 0.91283 0.91644 0.76550 0.94768 0.96289 0.92625 0.86018 0.86500 0.86766 0.86677 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.09 37.16 0.34 -1.38 16 2 C -0.09 -0.99 3.16 -90.62 -0.29 -1.28 16 3 C -0.15 -1.20 9.19 37.16 0.34 -0.85 16 4 C 0.06 0.74 5.13 37.15 0.19 0.93 16 5 O -0.35 -5.47 9.06 -55.09 -0.50 -5.97 16 6 C 0.07 1.02 3.13 -27.88 -0.09 0.93 16 7 H 0.09 1.13 7.79 -51.93 -0.40 0.72 16 8 C -0.17 -1.89 9.48 37.16 0.35 -1.54 16 9 C 0.52 9.46 7.14 -10.99 -0.08 9.38 16 10 O -0.53 -11.80 16.17 -14.30 -0.23 -12.03 16 11 N -0.70 -12.40 3.99 -54.94 -0.22 -12.62 16 12 C 0.20 3.87 2.12 -69.08 -0.15 3.73 16 13 H 0.09 2.04 7.44 -51.93 -0.39 1.66 16 14 C -0.01 -0.29 3.56 -27.88 -0.10 -0.39 16 15 C -0.52 -13.83 9.39 -34.44 -0.32 -14.15 16 16 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 19 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 23 C -0.08 -1.35 4.91 -104.62 -0.51 -1.86 16 24 C -0.11 -1.80 9.67 -39.59 -0.38 -2.18 16 25 C -0.12 -1.76 10.05 -39.59 -0.40 -2.16 16 26 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 28 C -0.11 -1.71 9.32 -39.58 -0.37 -2.08 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 38 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 41 H 0.40 6.30 8.39 -40.82 -0.34 5.96 16 42 H 0.03 0.78 7.20 -51.92 -0.37 0.41 16 43 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.12 1.97 8.04 -52.49 -0.42 1.54 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 47 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 49 H 0.12 1.66 7.72 -52.49 -0.41 1.25 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -32.57 403.48 -9.72 -42.29 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.60 Total: 7.41 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.36 Total: -15.38 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.55 Total: -38.39 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.73 Total: -18.00 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.57 -9.72 -42.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533048947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.987 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds