Wall clock time and date at job start Tue Mar 31 2020 12:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47133 * 2 1 4 4 C 1.52993 * 109.47204 * 119.99608 * 2 1 3 5 5 O 1.42903 * 109.46844 * 65.00635 * 4 2 1 6 6 C 1.42905 * 114.00151 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.47309 * 29.98836 * 6 5 4 8 8 C 1.53008 * 109.46461 * 269.99470 * 6 5 4 9 9 C 1.50695 * 109.47198 * 149.99481 * 6 5 4 10 10 O 1.21276 * 120.00241 * 4.99747 * 9 6 5 11 11 N 1.34777 * 119.99779 * 184.99696 * 9 6 5 12 12 C 1.46494 * 120.00188 * 180.02562 * 11 9 6 13 13 H 1.09000 * 109.47081 * 325.00162 * 12 11 9 14 14 C 1.53001 * 109.47302 * 205.00083 * 12 11 9 15 15 C 1.50701 * 109.47232 * 64.99671 * 14 12 11 16 16 H 1.08001 * 119.99717 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99813 * 179.97438 * 15 14 12 18 18 N 1.31516 * 119.99578 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47103 * 89.99714 * 19 17 15 21 21 H 1.48504 * 109.47065 * 209.99608 * 19 17 15 22 22 H 1.48497 * 109.47228 * 329.99836 * 19 17 15 23 23 C 1.50703 * 109.47581 * 84.99858 * 12 11 9 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 12 11 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 12 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 12 11 29 29 H 1.09009 * 109.46924 * 60.00057 * 1 2 3 30 30 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47060 * 299.99921 * 1 2 3 32 32 H 1.09000 * 109.47513 * 239.99981 * 2 1 3 33 33 H 1.09000 * 109.47035 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47032 * 299.99976 * 3 2 1 35 35 H 1.09000 * 109.46937 * 59.99628 * 3 2 1 36 36 H 1.08998 * 109.47439 * 305.00344 * 4 2 1 37 37 H 1.09000 * 109.47240 * 184.99570 * 4 2 1 38 38 H 1.09005 * 109.46452 * 179.97438 * 8 6 5 39 39 H 1.08996 * 109.46841 * 299.99652 * 8 6 5 40 40 H 1.08996 * 109.46858 * 60.00122 * 8 6 5 41 41 H 0.97005 * 119.99889 * 359.97438 * 11 9 6 42 42 H 1.09007 * 109.47213 * 184.99910 * 14 12 11 43 43 H 1.08998 * 109.47120 * 304.99384 * 14 12 11 44 44 H 0.97007 * 120.00057 * 180.02562 * 18 17 15 45 45 H 1.08001 * 119.99730 * 359.97438 * 24 23 12 46 46 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 48 48 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 49 49 H 1.07997 * 120.00455 * 0.02562 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 8 1.6620 -2.0981 1.1920 6 6 2.0914 -2.8660 2.3180 7 1 2.1384 -2.2251 3.1984 8 6 3.4776 -3.4502 2.0381 9 6 1.1143 -3.9866 2.5639 10 8 0.1961 -4.1706 1.7933 11 7 1.2608 -4.7843 3.6403 12 6 0.3113 -5.8740 3.8791 13 1 -0.6836 -5.5661 3.5574 14 6 0.2838 -6.2086 5.3719 15 6 -0.2587 -5.0314 6.1406 16 1 -0.5547 -4.1345 5.6168 17 6 -0.3782 -5.0998 7.5125 18 7 -0.8521 -4.0727 8.1833 19 14 0.1331 -6.6514 8.4184 20 1 1.5658 -6.5544 8.7966 21 1 -0.6929 -6.8046 9.6429 22 1 -0.0672 -7.8287 7.5357 23 6 0.7369 -7.0913 3.0993 24 6 -0.2115 -7.8751 2.4692 25 6 0.1791 -8.9913 1.7535 26 6 1.5181 -9.3234 1.6671 27 6 2.4667 -8.5389 2.2961 28 6 2.0760 -7.4238 3.0137 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6054 -0.2616 2.1369 37 1 3.1263 -0.6443 1.2951 38 1 3.8053 -4.0356 2.8972 39 1 3.4307 -4.0912 1.1578 40 1 4.1843 -2.6397 1.8603 41 1 1.9954 -4.6374 4.2565 42 1 -0.3546 -7.0765 5.5380 43 1 1.2948 -6.4307 5.7131 44 1 -0.9358 -4.1206 9.1485 45 1 -1.2577 -7.6152 2.5361 46 1 -0.5619 -9.6039 1.2615 47 1 1.8230 -10.1980 1.1116 48 1 3.5129 -8.7985 2.2290 49 1 2.8170 -6.8115 3.5060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533048947.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:59 Heat of formation + Delta-G solvation = -98.625177 kcal Electronic energy + Delta-G solvation = -27310.629174 eV Core-core repulsion = 23622.121267 eV Total energy + Delta-G solvation = -3688.507907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27268 -40.02521 -38.93725 -36.83843 -36.05745 -34.72700 -33.26282 -31.76498 -31.44934 -30.94184 -28.03979 -27.22619 -26.87846 -24.88687 -23.59991 -23.25349 -21.78137 -21.32213 -21.02899 -19.07260 -18.35484 -18.10842 -17.55070 -16.81646 -16.75145 -16.33926 -16.29466 -15.89026 -15.43494 -15.17545 -15.00979 -14.64076 -14.54431 -14.32581 -14.16613 -14.05071 -13.92002 -13.58407 -13.45428 -13.36320 -13.07010 -13.01994 -12.90523 -12.49322 -12.46505 -12.34150 -11.99362 -11.96887 -11.81863 -11.80190 -11.73084 -11.51457 -11.44791 -10.95487 -10.77353 -10.42167 -10.03269 -9.75959 -9.54348 -8.28252 -6.33389 0.49083 0.55655 1.36263 1.40359 1.50845 1.66001 1.95662 2.35922 2.87911 2.99932 3.08604 3.69875 3.87742 3.89952 3.94774 4.02072 4.02603 4.11582 4.19987 4.20669 4.32391 4.36944 4.45536 4.57132 4.61073 4.69720 4.71663 4.72722 4.76206 4.79773 4.83257 4.97275 5.02356 5.03874 5.14079 5.17655 5.17945 5.20694 5.25256 5.39118 5.41374 5.53285 5.55708 5.64336 5.64915 5.85215 6.14340 6.17754 6.25761 6.66275 6.74255 7.30397 7.32837 8.88072 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009276 B = 0.004169 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.779469 B = 6714.965375 C = 8813.477184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.139 4.139 4 C 0.056 3.944 5 O -0.383 6.383 6 C 0.073 3.927 7 H 0.098 0.902 8 C -0.158 4.158 9 C 0.508 3.492 10 O -0.578 6.578 11 N -0.692 5.692 12 C 0.206 3.794 13 H 0.051 0.949 14 C -0.003 4.003 15 C -0.521 4.521 16 H 0.030 0.970 17 C 0.013 3.987 18 N -0.947 5.947 19 Si 0.945 3.055 20 H -0.259 1.259 21 H -0.289 1.289 22 H -0.251 1.251 23 C -0.100 4.100 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.118 4.118 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.411 0.589 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.266 0.734 45 H 0.109 0.891 46 H 0.141 0.859 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.305 -0.344 -14.231 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.020 4.020 5 O -0.302 6.302 6 C 0.012 3.988 7 H 0.116 0.884 8 C -0.215 4.215 9 C 0.294 3.706 10 O -0.457 6.457 11 N -0.343 5.343 12 C 0.101 3.899 13 H 0.069 0.931 14 C -0.040 4.040 15 C -0.559 4.559 16 H 0.049 0.951 17 C -0.184 4.184 18 N -0.588 5.588 19 Si 0.769 3.231 20 H -0.183 1.183 21 H -0.216 1.216 22 H -0.175 1.175 23 C -0.101 4.101 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.110 0.890 41 H 0.247 0.753 42 H 0.047 0.953 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.127 0.873 46 H 0.159 0.841 47 H 0.168 0.832 48 H 0.167 0.833 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.500 -0.470 -14.754 19.343 hybrid contribution -0.362 0.003 1.371 1.418 sum 12.138 -0.466 -13.383 18.074 Atomic orbital electron populations 1.21782 0.95706 1.00917 1.01883 1.21112 0.95906 0.96938 0.97162 1.21748 1.01739 0.93333 1.02790 1.22936 0.99847 0.80432 0.98826 1.88001 1.79272 1.21425 1.41511 1.21954 0.93605 0.91914 0.91309 0.88388 1.22175 0.93159 1.02663 1.03520 1.21040 0.85683 0.83230 0.80636 1.90640 1.34979 1.72480 1.47582 1.45741 1.31289 1.31416 1.25888 1.19548 0.91630 0.83724 0.95048 0.93115 1.19721 0.97833 0.96202 0.90282 1.21192 1.42494 1.00207 0.92035 0.95143 1.25886 0.94585 0.99429 0.98522 1.70066 1.47646 1.32886 1.08165 0.85736 0.79097 0.80315 0.77980 1.18309 1.21558 1.17452 1.20377 0.95095 0.96533 0.98128 1.21176 0.99206 0.96464 0.98419 1.21370 0.97484 0.96538 0.98856 1.21489 0.92622 1.00534 0.99939 1.21464 1.00927 0.94536 0.97059 1.21117 0.94680 0.98060 0.99731 0.91363 0.94764 0.93132 0.90659 0.91181 0.91097 0.92354 0.93508 0.90793 0.89245 0.92347 0.88968 0.75304 0.95251 0.94265 0.92512 0.87263 0.84122 0.83193 0.83259 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.09 71.98 0.65 -2.87 16 2 C -0.09 -1.92 3.16 -10.79 -0.03 -1.96 16 3 C -0.14 -2.02 9.19 71.98 0.66 -1.35 16 4 C 0.06 1.28 5.13 71.98 0.37 1.65 16 5 O -0.38 -12.04 9.06 -129.99 -1.18 -13.22 16 6 C 0.07 2.13 3.13 29.85 0.09 2.22 16 7 H 0.10 2.55 7.79 -2.39 -0.02 2.53 16 8 C -0.16 -3.26 9.48 71.98 0.68 -2.57 16 9 C 0.51 19.50 7.14 87.66 0.63 20.13 16 10 O -0.58 -27.71 16.17 15.97 0.26 -27.45 16 11 N -0.69 -25.36 3.99 -446.11 -1.78 -27.14 16 12 C 0.21 8.51 2.12 44.25 0.09 8.60 16 13 H 0.05 2.48 7.44 -2.39 -0.02 2.46 16 14 C 0.00 -0.12 3.56 29.85 0.11 -0.02 16 15 C -0.52 -28.78 9.39 25.60 0.24 -28.54 16 16 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 17 C 0.01 0.74 5.47 84.65 0.46 1.20 16 18 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 19 Si 0.95 42.40 27.47 68.60 1.88 44.29 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 23 C -0.10 -3.58 4.91 -19.87 -0.10 -3.68 16 24 C -0.13 -4.59 9.67 22.27 0.22 -4.37 16 25 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 26 C -0.13 -2.99 10.05 22.27 0.22 -2.76 16 27 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 28 C -0.12 -3.47 9.32 22.27 0.21 -3.26 16 29 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.03 1.05 7.82 -2.39 -0.02 1.03 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 1.10 8.08 -2.39 -0.02 1.08 16 37 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 38 H 0.09 1.53 7.92 -2.38 -0.02 1.51 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.43 7.87 -2.39 -0.02 1.41 16 41 H 0.41 12.94 8.39 -92.70 -0.78 12.17 16 42 H 0.03 1.35 7.20 -2.38 -0.02 1.33 16 43 H 0.04 1.61 7.57 -2.39 -0.02 1.59 16 44 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 45 H 0.11 3.83 8.04 -2.91 -0.02 3.80 16 46 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 47 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 48 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 49 H 0.13 3.36 7.72 -2.91 -0.02 3.34 16 Total: -1.00 -75.72 403.48 4.51 -71.21 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.08 Total: 33.33 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 4.95 Total: -23.47 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.48 Total: -84.68 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.92 Total: -40.67 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.29 kcal Total: -75.72 4.51 -71.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533048947.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.420 kcal (2) G-P(sol) polarization free energy of solvation -75.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds