Wall clock time and date at job start Tue Mar 31 2020 13:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99557 * 2 1 4 4 C 1.38756 * 120.05946 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94330 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.06108 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11109 * 0.04495 * 6 5 4 8 8 C 1.50700 * 119.97571 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46757 * 95.29788 * 8 7 6 10 10 H 1.09001 * 110.36664 * 57.70532 * 9 8 7 11 11 C 1.54377 * 110.41677 * 295.35126 * 9 8 7 12 12 C 1.54257 * 105.06262 * 217.37078 * 11 9 8 13 13 C 1.54381 * 105.06086 * 359.97438 * 12 11 9 14 14 N 1.48564 * 110.40753 * 180.17705 * 9 8 7 15 15 C 1.46896 * 110.99969 * 277.82195 * 14 9 8 16 16 C 1.53004 * 109.47150 * 164.74665 * 15 14 9 17 17 O 1.42895 * 109.47080 * 64.99714 * 16 15 14 18 18 C 1.42901 * 114.00214 * 180.02562 * 17 16 15 19 19 C 1.50693 * 109.47678 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00339 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99949 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00021 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47036 * 89.99954 * 23 21 19 25 25 H 1.48496 * 109.47255 * 209.99745 * 23 21 19 26 26 H 1.48496 * 109.46997 * 330.00448 * 23 21 19 27 27 C 1.38173 * 120.05291 * 359.67945 * 7 6 5 28 28 H 1.08997 * 109.47522 * 299.99469 * 1 2 3 29 29 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47022 * 60.00430 * 1 2 3 31 31 H 1.07998 * 120.02278 * 359.97438 * 4 3 2 32 32 H 1.08010 * 119.96791 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94610 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47489 * 215.30067 * 8 7 6 35 35 H 1.09000 * 109.46534 * 335.30474 * 8 7 6 36 36 H 1.09002 * 110.32091 * 336.26995 * 11 9 8 37 37 H 1.08995 * 110.32356 * 98.36664 * 11 9 8 38 38 H 1.09003 * 110.32392 * 118.89682 * 12 11 9 39 39 H 1.09004 * 110.32270 * 241.10254 * 12 11 9 40 40 H 1.08995 * 110.41330 * 142.63359 * 13 12 11 41 41 H 1.08998 * 110.41131 * 264.96096 * 13 12 11 42 42 H 1.09004 * 109.47441 * 284.74153 * 15 14 9 43 43 H 1.09003 * 109.47484 * 44.74621 * 15 14 9 44 44 H 1.09000 * 109.47073 * 184.99951 * 16 15 14 45 45 H 1.09004 * 109.46521 * 304.99814 * 16 15 14 46 46 H 1.08998 * 109.47201 * 300.00485 * 18 17 16 47 47 H 1.09001 * 109.46813 * 59.99999 * 18 17 16 48 48 H 0.97003 * 120.00066 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.02489 * 180.29851 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3017 3.6759 -0.0005 7 6 4.0559 2.5173 -0.0004 8 6 5.5607 2.5984 -0.0004 9 6 6.0770 2.4930 1.4360 10 1 5.7383 1.5635 1.8937 11 6 5.6065 3.7054 2.2677 12 6 6.7921 4.0386 3.1967 13 6 7.8790 2.9990 2.8486 14 7 7.5602 2.5749 1.4607 15 6 8.1646 1.2710 1.1569 16 6 9.6443 1.4614 0.8172 17 8 10.3396 1.9412 1.9696 18 6 11.7368 2.1543 1.7586 19 6 12.3665 2.6565 3.0323 20 1 11.7603 2.7991 3.9147 21 6 13.7163 2.9349 3.0709 22 7 14.2657 3.3736 4.1824 23 14 14.7648 2.6889 1.5446 24 1 14.7819 3.9424 0.7485 25 1 16.1507 2.3393 1.9472 26 1 14.1952 1.5896 0.7247 27 6 3.4311 1.2849 0.0059 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 0.2127 2.3203 -0.0014 32 1 1.3337 4.5114 -0.0011 33 1 3.7920 4.6383 -0.0005 34 1 5.9687 1.7804 -0.5941 35 1 5.8732 3.5502 -0.4299 36 1 5.3880 4.5505 1.6148 37 1 4.7260 3.4434 2.8542 38 1 7.1555 5.0473 2.9999 39 1 6.4945 3.9396 4.2407 40 1 8.8681 3.4552 2.8886 41 1 7.8250 2.1499 3.5299 42 1 8.0723 0.6168 2.0239 43 1 7.6515 0.8218 0.3065 44 1 10.0712 0.5080 0.5059 45 1 9.7409 2.1845 0.0073 46 1 12.2075 1.2156 1.4666 47 1 11.8765 2.8920 0.9684 48 1 15.2154 3.5691 4.2097 49 1 4.0207 0.3801 0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559049646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:24 Heat of formation + Delta-G solvation = -59.719027 kcal Electronic energy + Delta-G solvation = -26566.982617 eV Core-core repulsion = 22880.161807 eV Total energy + Delta-G solvation = -3686.820810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49033 -39.21149 -37.73996 -36.65536 -33.28254 -32.79177 -32.13956 -30.83091 -29.16238 -28.47729 -27.62792 -26.99278 -25.37157 -22.87535 -22.20356 -21.74692 -21.46011 -20.38760 -19.91963 -18.00431 -16.85625 -16.54469 -16.26812 -16.09026 -15.93982 -15.63050 -15.38638 -14.61035 -14.44343 -14.35462 -14.22429 -13.84869 -13.39440 -13.28950 -13.15331 -12.91431 -12.60941 -12.39242 -12.27777 -12.24088 -11.90055 -11.68493 -11.43393 -11.29534 -11.16559 -11.03153 -10.93121 -10.77049 -10.66465 -10.66098 -10.36562 -10.28708 -9.83421 -9.14301 -9.02421 -8.79182 -8.45345 -8.41310 -8.20963 -6.09380 -4.07879 1.06708 1.21487 2.94652 3.27023 3.33817 3.35707 3.49525 4.11404 4.37955 4.48987 4.60661 4.68492 4.74708 4.75522 4.76443 4.85736 4.88228 5.07450 5.09593 5.10965 5.22255 5.22585 5.29395 5.36227 5.41300 5.56004 5.61878 5.67804 5.72256 5.86634 5.90600 5.94508 6.00507 6.02864 6.05485 6.13891 6.17397 6.21491 6.28157 6.40877 6.45216 6.52619 6.66000 6.72122 7.05099 7.10846 7.17325 7.30797 7.63534 8.06739 8.70477 9.01669 9.50520 11.03576 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.002234 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.158420 B =12531.418256 C =12927.319609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.216 4.216 5 C -0.079 4.079 6 C -0.150 4.150 7 C -0.033 4.033 8 C -0.068 4.068 9 C 0.065 3.935 10 H 0.050 0.950 11 C -0.115 4.115 12 C -0.128 4.128 13 C 0.043 3.957 14 N -0.500 5.500 15 C 0.048 3.952 16 C 0.065 3.935 17 O -0.377 6.377 18 C 0.169 3.831 19 C -0.516 4.516 20 H 0.081 0.919 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.876 3.124 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.267 1.267 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.046 0.954 46 H 0.000 1.000 47 H -0.002 1.002 48 H 0.266 0.734 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.691 -2.665 -9.995 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.168 4.168 7 C -0.033 4.033 8 C -0.106 4.106 9 C -0.043 4.043 10 H 0.068 0.932 11 C -0.153 4.153 12 C -0.166 4.166 13 C -0.084 4.084 14 N -0.224 5.224 15 C -0.080 4.080 16 C -0.013 4.013 17 O -0.296 6.296 18 C 0.094 3.906 19 C -0.554 4.554 20 H 0.100 0.900 21 C -0.131 4.131 22 N -0.535 5.535 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.191 1.191 27 C -0.168 4.168 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.018 0.982 47 H 0.016 0.984 48 H 0.076 0.924 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -28.291 -2.407 -10.126 30.144 hybrid contribution 0.200 -0.693 -0.413 0.831 sum -28.090 -3.099 -10.539 30.162 Atomic orbital electron populations 1.23039 0.78491 1.03882 1.01279 1.86077 1.21305 1.27101 1.88791 1.19009 0.92296 0.84083 0.96486 1.21187 0.99823 0.92501 1.09977 1.20919 0.94651 0.96868 0.97321 1.21021 0.93561 0.98200 1.03992 1.19704 0.95829 0.92034 0.95774 1.20561 0.89255 1.03923 0.96815 1.22592 0.89389 0.97874 0.94459 0.93225 1.22313 0.97642 0.97554 0.97758 1.22358 0.95289 1.00210 0.98762 1.23165 1.00555 0.97250 0.87457 1.65326 1.04980 1.26181 1.25919 1.22302 0.94620 0.90554 1.00541 1.22303 0.91136 0.97463 0.90407 1.87898 1.22618 1.86065 1.33043 1.20561 0.77994 0.94268 0.97773 1.20881 0.93730 1.43814 0.96939 0.90045 1.24771 0.97424 0.94698 0.96161 1.69877 1.12225 1.45085 1.26289 0.86847 0.80033 0.79173 0.83669 1.19947 1.20888 1.19148 1.20316 0.91217 0.98378 1.06938 0.92687 0.88294 0.92727 0.85791 0.85888 0.85714 0.90774 0.89698 0.91157 0.91953 0.91108 0.91813 0.87719 0.94041 0.93821 0.90449 0.94303 0.93543 0.98235 0.98416 0.92435 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.12 10.50 -19.42 -0.20 -3.33 16 3 C 0.13 1.29 6.69 -39.21 -0.26 1.02 16 4 C -0.22 -1.88 9.04 -39.43 -0.36 -2.23 16 5 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 6 C -0.15 -1.37 8.94 -39.56 -0.35 -1.72 16 7 C -0.03 -0.33 4.76 -104.64 -0.50 -0.83 16 8 C -0.07 -0.71 4.96 -27.88 -0.14 -0.85 16 9 C 0.07 0.79 2.30 -66.07 -0.15 0.64 16 10 H 0.05 0.62 8.00 -51.93 -0.42 0.20 16 11 C -0.11 -1.31 5.72 -25.35 -0.15 -1.46 16 12 C -0.13 -1.69 7.00 -25.35 -0.18 -1.87 16 13 C 0.04 0.70 5.57 -2.16 -0.01 0.69 16 14 N -0.50 -7.44 4.99 -222.11 -1.11 -8.55 16 15 C 0.05 0.72 5.36 -3.82 -0.02 0.70 16 16 C 0.06 1.16 6.28 37.16 0.23 1.39 16 17 O -0.38 -8.62 8.13 -35.23 -0.29 -8.91 16 18 C 0.17 4.32 4.76 36.00 0.17 4.49 16 19 C -0.52 -15.29 9.99 -34.44 -0.34 -15.63 16 20 H 0.08 2.63 8.06 -52.48 -0.42 2.20 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 23 Si 0.88 21.61 27.47 -169.99 -4.67 16.95 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 27 C -0.15 -1.58 9.66 -39.43 -0.38 -1.96 16 28 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 31 H 0.12 0.81 6.30 -52.49 -0.33 0.47 16 32 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.12 1.00 7.66 -52.48 -0.40 0.60 16 34 H 0.07 0.76 7.24 -51.93 -0.38 0.38 16 35 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 36 H 0.07 0.75 7.09 -51.93 -0.37 0.38 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 2.07 6.93 -51.93 -0.36 1.71 16 41 H 0.04 0.69 7.69 -51.93 -0.40 0.29 16 42 H 0.04 0.67 7.65 -51.93 -0.40 0.28 16 43 H 0.08 0.94 7.08 -51.93 -0.37 0.58 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 47 H 0.00 -0.05 7.57 -51.93 -0.39 -0.44 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -32.46 387.21 -9.96 -42.43 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.37 Total: -1.96 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.94 Total: -15.53 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.33 Total: -35.48 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.49 Total: -12.24 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.46 -9.96 -42.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559049646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.291 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds