Wall clock time and date at job start Tue Mar 31 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99557 * 2 1 4 4 C 1.38756 * 120.05946 * 359.97438 * 3 2 1 5 5 C 1.38119 * 119.94330 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.06108 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.11109 * 0.04495 * 6 5 4 8 8 C 1.50700 * 119.97571 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46757 * 95.29788 * 8 7 6 10 10 H 1.09001 * 110.36664 * 57.70532 * 9 8 7 11 11 C 1.54377 * 110.41677 * 295.35126 * 9 8 7 12 12 C 1.54257 * 105.06262 * 217.37078 * 11 9 8 13 13 C 1.54381 * 105.06086 * 359.97438 * 12 11 9 14 14 N 1.48564 * 110.40753 * 180.17705 * 9 8 7 15 15 C 1.46896 * 110.99969 * 277.82195 * 14 9 8 16 16 C 1.53004 * 109.47150 * 164.74665 * 15 14 9 17 17 O 1.42895 * 109.47080 * 64.99714 * 16 15 14 18 18 C 1.42901 * 114.00214 * 180.02562 * 17 16 15 19 19 C 1.50693 * 109.47678 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99920 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00339 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99949 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00021 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47036 * 89.99954 * 23 21 19 25 25 H 1.48496 * 109.47255 * 209.99745 * 23 21 19 26 26 H 1.48496 * 109.46997 * 330.00448 * 23 21 19 27 27 C 1.38173 * 120.05291 * 359.67945 * 7 6 5 28 28 H 1.08997 * 109.47522 * 299.99469 * 1 2 3 29 29 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47022 * 60.00430 * 1 2 3 31 31 H 1.07998 * 120.02278 * 359.97438 * 4 3 2 32 32 H 1.08010 * 119.96791 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.94610 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47489 * 215.30067 * 8 7 6 35 35 H 1.09000 * 109.46534 * 335.30474 * 8 7 6 36 36 H 1.09002 * 110.32091 * 336.26995 * 11 9 8 37 37 H 1.08995 * 110.32356 * 98.36664 * 11 9 8 38 38 H 1.09003 * 110.32392 * 118.89682 * 12 11 9 39 39 H 1.09004 * 110.32270 * 241.10254 * 12 11 9 40 40 H 1.08995 * 110.41330 * 142.63359 * 13 12 11 41 41 H 1.08998 * 110.41131 * 264.96096 * 13 12 11 42 42 H 1.09004 * 109.47441 * 284.74153 * 15 14 9 43 43 H 1.09003 * 109.47484 * 44.74621 * 15 14 9 44 44 H 1.09000 * 109.47073 * 184.99951 * 16 15 14 45 45 H 1.09004 * 109.46521 * 304.99814 * 16 15 14 46 46 H 1.08998 * 109.47201 * 300.00485 * 18 17 16 47 47 H 1.09001 * 109.46813 * 59.99999 * 18 17 16 48 48 H 0.97003 * 120.00066 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.02489 * 180.29851 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3017 3.6759 -0.0005 7 6 4.0559 2.5173 -0.0004 8 6 5.5607 2.5984 -0.0004 9 6 6.0770 2.4930 1.4360 10 1 5.7383 1.5635 1.8937 11 6 5.6065 3.7054 2.2677 12 6 6.7921 4.0386 3.1967 13 6 7.8790 2.9990 2.8486 14 7 7.5602 2.5749 1.4607 15 6 8.1646 1.2710 1.1569 16 6 9.6443 1.4614 0.8172 17 8 10.3396 1.9412 1.9696 18 6 11.7368 2.1543 1.7586 19 6 12.3665 2.6565 3.0323 20 1 11.7603 2.7991 3.9147 21 6 13.7163 2.9349 3.0709 22 7 14.2657 3.3736 4.1824 23 14 14.7648 2.6889 1.5446 24 1 14.7819 3.9424 0.7485 25 1 16.1507 2.3393 1.9472 26 1 14.1952 1.5896 0.7247 27 6 3.4311 1.2849 0.0059 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 0.2127 2.3203 -0.0014 32 1 1.3337 4.5114 -0.0011 33 1 3.7920 4.6383 -0.0005 34 1 5.9687 1.7804 -0.5941 35 1 5.8732 3.5502 -0.4299 36 1 5.3880 4.5505 1.6148 37 1 4.7260 3.4434 2.8542 38 1 7.1555 5.0473 2.9999 39 1 6.4945 3.9396 4.2407 40 1 8.8681 3.4552 2.8886 41 1 7.8250 2.1499 3.5299 42 1 8.0723 0.6168 2.0239 43 1 7.6515 0.8218 0.3065 44 1 10.0712 0.5080 0.5059 45 1 9.7409 2.1845 0.0073 46 1 12.2075 1.2156 1.4666 47 1 11.8765 2.8920 0.9684 48 1 15.2154 3.5691 4.2097 49 1 4.0207 0.3801 0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559049646.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:23 Heat of formation + Delta-G solvation = -80.102679 kcal Electronic energy + Delta-G solvation = -26567.866518 eV Core-core repulsion = 22880.161807 eV Total energy + Delta-G solvation = -3687.704711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18410 -40.24910 -38.67367 -38.14231 -34.95789 -34.06080 -33.50541 -31.49401 -30.48796 -29.85673 -28.58497 -28.13291 -26.28668 -24.01814 -23.56055 -23.33385 -22.21761 -21.61516 -20.85085 -19.04924 -18.65942 -17.48104 -17.26800 -17.11420 -16.90257 -16.68906 -16.61552 -16.18333 -15.86564 -15.51188 -15.09923 -14.90771 -14.61704 -14.47163 -14.20719 -14.08303 -13.76192 -13.73391 -13.51717 -13.03580 -13.00637 -12.86017 -12.70753 -12.47152 -12.38790 -12.10645 -12.04407 -12.01048 -11.87037 -11.81256 -11.67389 -11.52179 -11.35065 -11.28729 -10.90959 -10.28285 -9.73618 -9.43600 -9.10535 -8.36481 -6.43528 0.38333 0.53467 1.33129 1.35907 1.46758 2.29583 2.39275 2.77710 2.96100 3.04272 3.14469 3.67676 3.80327 3.91957 3.94801 4.06568 4.16536 4.26166 4.30081 4.33631 4.36071 4.39290 4.44093 4.51085 4.53771 4.54892 4.59387 4.63684 4.70876 4.72378 4.73897 4.79732 4.88256 4.98254 5.01533 5.05327 5.08677 5.17122 5.23076 5.32100 5.35472 5.38363 5.46557 5.54064 5.74064 5.87039 5.94670 5.98688 6.14352 6.49157 6.60093 6.78561 7.20810 8.80410 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.002234 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.158420 B =12531.418256 C =12927.319609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.112 3.888 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.039 4.039 8 C -0.059 4.059 9 C 0.069 3.931 10 H 0.046 0.954 11 C -0.106 4.106 12 C -0.124 4.124 13 C 0.044 3.956 14 N -0.508 5.508 15 C 0.053 3.947 16 C 0.056 3.944 17 O -0.397 6.397 18 C 0.181 3.819 19 C -0.539 4.539 20 H 0.030 0.970 21 C 0.011 3.989 22 N -0.942 5.942 23 Si 0.955 3.045 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.247 1.247 27 C -0.168 4.168 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.034 0.966 43 H 0.111 0.889 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.009 0.991 47 H 0.007 0.993 48 H 0.272 0.728 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.384 -2.718 -12.538 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.174 4.174 7 C -0.040 4.040 8 C -0.096 4.096 9 C -0.039 4.039 10 H 0.065 0.935 11 C -0.144 4.144 12 C -0.163 4.163 13 C -0.084 4.084 14 N -0.232 5.232 15 C -0.076 4.076 16 C -0.021 4.021 17 O -0.317 6.317 18 C 0.105 3.895 19 C -0.577 4.577 20 H 0.049 0.951 21 C -0.186 4.186 22 N -0.581 5.581 23 Si 0.776 3.224 24 H -0.185 1.185 25 H -0.199 1.199 26 H -0.171 1.171 27 C -0.187 4.187 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.129 0.871 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.026 0.974 47 H 0.024 0.976 48 H 0.081 0.919 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -30.020 -2.467 -12.673 32.679 hybrid contribution 0.589 -0.689 0.459 1.016 sum -29.431 -3.156 -12.213 32.021 Atomic orbital electron populations 1.23308 0.76558 1.05381 1.02217 1.86045 1.23423 1.27266 1.88839 1.19197 0.92442 0.84820 0.96864 1.21476 1.00958 0.92098 1.09031 1.21249 0.94600 0.97745 0.96214 1.21226 0.94111 0.98312 1.03723 1.19638 0.95383 0.92314 0.96639 1.20454 0.89767 1.04052 0.95370 1.22624 0.87289 0.98058 0.95918 0.93545 1.22293 0.96948 0.97705 0.97470 1.22329 0.95068 0.98998 0.99862 1.22973 0.99464 0.97439 0.88485 1.65281 1.07040 1.26275 1.24617 1.22315 0.93140 0.90602 1.01500 1.22637 0.92381 0.98101 0.88947 1.87893 1.21442 1.86590 1.35778 1.20261 0.79424 0.94401 0.95443 1.21130 0.94241 1.45030 0.97311 0.95135 1.25831 0.98789 0.93768 1.00252 1.70033 1.13053 1.45935 1.29100 0.85615 0.77814 0.80166 0.78779 1.18523 1.19859 1.17056 1.20415 0.91816 0.98500 1.07944 0.91799 0.86688 0.91630 0.83709 0.83414 0.84559 0.90559 0.89591 0.89832 0.90813 0.91302 0.90962 0.92114 0.95429 0.94731 0.87098 0.92657 0.93034 0.97377 0.97574 0.91884 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.32 10.50 -92.41 -0.97 -7.29 16 3 C 0.11 2.13 6.69 22.51 0.15 2.28 16 4 C -0.22 -3.26 9.04 22.37 0.20 -3.06 16 5 C -0.08 -1.12 10.04 22.25 0.22 -0.89 16 6 C -0.16 -2.48 8.94 22.28 0.20 -2.28 16 7 C -0.04 -0.72 4.76 -19.88 -0.09 -0.82 16 8 C -0.06 -1.13 4.96 29.85 0.15 -0.98 16 9 C 0.07 1.59 2.30 45.06 0.10 1.70 16 10 H 0.05 1.12 8.00 -2.39 -0.02 1.10 16 11 C -0.11 -2.28 5.72 31.49 0.18 -2.10 16 12 C -0.12 -3.29 7.00 31.49 0.22 -3.07 16 13 C 0.04 1.51 5.57 86.45 0.48 1.99 16 14 N -0.51 -15.01 4.99 -856.62 -4.27 -19.28 16 15 C 0.05 1.53 5.36 86.31 0.46 1.99 16 16 C 0.06 1.97 6.28 71.98 0.45 2.42 16 17 O -0.40 -18.63 8.13 -148.98 -1.21 -19.84 16 18 C 0.18 9.25 4.76 71.23 0.34 9.58 16 19 C -0.54 -33.26 9.99 25.60 0.26 -33.00 16 20 H 0.03 2.11 8.06 -2.91 -0.02 2.09 16 21 C 0.01 0.69 5.47 84.65 0.46 1.15 16 22 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 23 Si 0.95 44.20 27.47 68.60 1.88 46.09 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 27 C -0.17 -3.39 9.66 22.37 0.22 -3.17 16 28 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16 29 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 31 H 0.15 1.46 6.30 -2.91 -0.02 1.44 16 32 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 33 H 0.14 1.80 7.66 -2.91 -0.02 1.78 16 34 H 0.08 1.42 7.24 -2.39 -0.02 1.41 16 35 H 0.09 1.65 8.00 -2.39 -0.02 1.63 16 36 H 0.08 1.59 7.09 -2.39 -0.02 1.57 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 2.59 6.93 -2.39 -0.02 2.58 16 41 H 0.03 0.98 7.69 -2.39 -0.02 0.96 16 42 H 0.03 1.07 7.65 -2.38 -0.02 1.05 16 43 H 0.11 2.47 7.08 -2.39 -0.02 2.46 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.01 0.42 7.20 -2.39 -0.02 0.40 16 47 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 48 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 49 H 0.12 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -73.19 387.21 1.70 -71.49 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.85 Total: 15.37 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 5.12 Total: -26.95 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -3.97 Total: -78.86 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -2.18 Total: -27.13 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -73.19 1.70 -71.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559049646.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.613 kcal (2) G-P(sol) polarization free energy of solvation -73.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds