Wall clock time and date at job start Tue Mar 31 2020 13:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 N 1.46897 * 109.47528 * 179.97438 * 4 3 2 6 6 C 1.46894 * 110.99995 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47173 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47011 * 54.99886 * 7 6 5 9 9 C 1.47204 * 109.46564 * 295.00286 * 7 6 5 10 10 N 6.93945 * 87.71933 * 354.54752 * 2 1 3 11 11 C 1.52994 * 109.46978 * 175.00515 * 7 6 5 12 12 C 1.50708 * 109.46794 * 184.99957 * 11 7 6 13 13 H 1.07999 * 120.00068 * 0.02562 * 12 11 7 14 14 C 1.37878 * 119.99929 * 179.97438 * 12 11 7 15 15 N 1.31511 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99897 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47283 * 120.00031 * 16 14 12 19 19 H 1.48499 * 109.47310 * 239.99941 * 16 14 12 20 20 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 21 21 C 1.50695 * 109.46944 * 66.04457 * 20 2 1 22 22 C 1.38238 * 119.97726 * 269.72330 * 21 20 2 23 23 C 1.38199 * 120.02708 * 179.72593 * 22 21 20 24 24 C 1.38465 * 119.97288 * 0.57577 * 23 22 21 25 25 F 1.35102 * 120.02543 * 179.67928 * 24 23 22 26 26 C 1.38462 * 119.94590 * 359.70089 * 24 23 22 27 27 C 1.38195 * 119.97626 * 0.02562 * 26 24 23 28 28 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 29 29 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 31 31 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 32 32 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 33 33 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 34 34 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 35 35 H 1.00902 * 110.99922 * 56.04116 * 5 4 3 36 36 H 1.08998 * 109.47656 * 300.00373 * 6 5 4 37 37 H 1.09001 * 109.46867 * 60.00585 * 6 5 4 38 38 H 1.09003 * 109.47025 * 304.99405 * 11 7 6 39 39 H 1.09000 * 109.47561 * 65.00094 * 11 7 6 40 40 H 0.97000 * 120.00354 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46783 * 186.04686 * 20 2 1 42 42 H 1.09002 * 109.46955 * 306.04307 * 20 2 1 43 43 H 1.08001 * 119.98487 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.01905 * 180.25287 * 23 22 21 45 45 H 1.07998 * 120.00657 * 179.97438 * 26 24 23 46 46 H 1.07992 * 119.98776 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1573 3.4291 -1.3180 6 6 1.8266 4.1199 -2.5714 7 6 2.3901 5.5419 -2.5341 8 1 3.4598 5.5035 -2.3281 9 6 1.7139 6.3100 -1.4760 10 7 1.1929 6.9026 -0.6589 11 6 2.1549 6.2193 -3.8856 12 6 2.8168 7.5732 -3.8909 13 1 3.3521 7.9160 -3.0177 14 6 2.7399 8.3739 -5.0107 15 7 2.0894 7.9558 -6.0745 16 14 3.5609 10.0517 -5.0175 17 1 4.2234 10.2839 -3.7089 18 1 4.5743 10.1026 -6.1018 19 1 2.5373 11.1028 -5.2469 20 6 1.9955 -0.7660 1.1376 21 6 1.6370 -2.2204 0.9729 22 6 0.4537 -2.7040 1.4991 23 6 0.1211 -4.0363 1.3437 24 6 0.9794 -4.8896 0.6709 25 9 0.6584 -6.1937 0.5240 26 6 2.1670 -4.4053 0.1492 27 6 2.4947 -3.0713 0.3009 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 0.8310 32 1 3.0797 1.3444 0.1083 33 1 2.0658 1.5016 -2.1491 34 1 0.5471 2.0845 -1.4264 35 1 3.1529 3.4346 -1.1541 36 1 2.2629 3.5785 -3.4108 37 1 0.7437 4.1609 -2.6889 38 1 2.5795 5.6043 -4.6791 39 1 1.0841 6.3378 -4.0512 40 1 2.0349 8.5192 -6.8622 41 1 3.0798 -0.6611 1.1756 42 1 1.5612 -0.3872 2.0628 43 1 -0.2131 -2.0394 2.0285 44 1 -0.8053 -4.4131 1.7514 45 1 2.8373 -5.0700 -0.3755 46 1 3.4207 -2.6933 -0.1063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570323090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:19 Heat of formation + Delta-G solvation = -0.063944 kcal Electronic energy + Delta-G solvation = -24745.682437 eV Core-core repulsion = 20970.280911 eV Total energy + Delta-G solvation = -3775.401525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.176 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.25360 -39.87615 -38.01618 -37.00564 -35.10495 -33.57070 -32.20089 -31.59368 -31.25371 -28.62820 -27.50984 -26.16207 -24.09347 -23.42046 -22.54405 -21.89048 -21.49076 -20.98374 -18.04519 -17.15735 -16.82701 -16.46729 -16.19449 -16.15948 -15.87028 -15.76564 -14.92025 -14.66606 -14.63093 -14.23204 -14.01241 -13.88472 -13.70473 -13.62216 -13.20149 -12.82165 -12.50350 -12.42114 -12.23792 -12.15499 -12.05950 -11.94769 -11.64236 -11.48525 -11.36896 -11.17425 -11.08471 -10.93744 -10.70327 -10.51380 -10.25129 -9.56159 -9.51013 -9.22527 -9.05066 -8.62913 -8.47606 -8.33171 -6.10799 -4.13943 0.69363 0.82006 3.05811 3.27608 3.35981 3.40472 3.63969 3.75003 3.82737 3.86620 4.25522 4.32580 4.37586 4.48107 4.49373 4.71570 4.79050 4.84248 4.90708 4.99229 5.11748 5.14923 5.27438 5.29745 5.31158 5.46408 5.48888 5.52272 5.59151 5.66119 5.70371 5.71184 5.80370 5.85135 5.89710 6.02458 6.10088 6.36317 6.46189 6.47994 6.68006 6.70676 7.07493 7.41032 7.46112 7.52188 7.84640 8.21888 8.57669 8.91134 9.51675 11.00115 Molecular weight = 319.18amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.001661 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.808502 B =16852.676502 C =17203.712863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.536 5.536 3 C 0.057 3.943 4 C 0.063 3.937 5 N -0.695 5.695 6 C 0.069 3.931 7 C 0.009 3.991 8 H 0.099 0.901 9 C 0.256 3.744 10 N -0.480 5.480 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.093 3.907 21 C -0.085 4.085 22 C -0.085 4.085 23 C -0.155 4.155 24 C 0.095 3.905 25 F -0.142 7.142 26 C -0.154 4.154 27 C -0.068 4.068 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.341 0.659 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.130 0.870 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 -26.597 13.172 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.260 5.260 3 C -0.071 4.071 4 C -0.066 4.066 5 N -0.327 5.327 6 C -0.061 4.061 7 C -0.013 4.013 8 H 0.117 0.883 9 C -0.061 4.061 10 N -0.157 5.157 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.034 4.034 21 C -0.086 4.086 22 C -0.104 4.104 23 C -0.174 4.174 24 C 0.076 3.924 25 F -0.121 7.121 26 C -0.173 4.173 27 C -0.087 4.087 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.158 0.842 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.148 0.852 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.268 -25.655 14.137 29.320 hybrid contribution 0.815 0.451 -0.412 1.018 sum -0.454 -25.204 13.725 28.703 Atomic orbital electron populations 1.22547 0.87222 1.02187 1.01257 1.61941 1.08324 1.13739 1.42045 1.22087 1.00109 0.87025 0.97906 1.21865 1.00647 0.88084 0.96053 1.60460 1.19734 1.15713 1.36746 1.22048 1.01578 0.92859 0.89641 1.19223 0.98311 0.90701 0.93037 0.88284 1.28866 0.92713 0.92084 0.92465 1.80976 1.10624 1.11168 1.12932 1.19177 0.98424 0.95459 0.87726 1.21186 1.34160 1.01255 0.99809 0.92427 1.24960 0.95239 0.98311 0.95525 1.69946 1.41762 1.37391 1.03905 0.86532 0.79292 0.84131 0.78099 1.19679 1.20863 1.20973 1.21039 1.00821 0.89262 0.92279 1.19818 0.94794 0.95562 0.98442 1.20951 0.96210 0.94478 0.98713 1.21119 1.00498 0.93969 1.01776 1.17761 0.95544 0.78416 1.00728 1.91503 1.92844 1.33667 1.94048 1.21179 0.96488 0.97048 1.02574 1.20917 0.99669 0.91812 0.96296 0.90787 0.91181 0.95391 0.93696 0.90717 0.94179 0.91066 0.84173 0.93135 0.90564 0.94406 0.95551 0.92846 0.89550 0.93592 0.85234 0.84813 0.84709 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 8.98 60.07 0.54 0.67 16 2 N -0.54 -4.45 4.75 -244.36 -1.16 -5.61 16 3 C 0.06 0.51 5.22 -3.83 -0.02 0.49 16 4 C 0.06 0.66 5.61 -3.83 -0.02 0.64 16 5 N -0.70 -8.53 6.20 -113.78 -0.71 -9.24 16 6 C 0.07 0.98 5.05 -3.82 -0.02 0.96 16 7 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 8 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 9 C 0.26 5.28 13.67 -20.76 -0.28 5.00 16 10 N -0.48 -10.85 18.54 42.15 0.78 -10.07 16 11 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 12 C -0.53 -13.90 8.60 -34.44 -0.30 -14.20 16 13 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.09 0.64 5.12 -4.98 -0.03 0.62 16 21 C -0.09 -0.60 4.88 -104.62 -0.51 -1.11 16 22 C -0.08 -0.56 7.91 -39.60 -0.31 -0.88 16 23 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 24 C 0.09 0.77 7.30 -39.42 -0.29 0.49 16 25 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 26 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 27 C -0.07 -0.47 9.70 -39.59 -0.38 -0.85 16 28 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 29 H 0.07 0.53 5.91 -51.93 -0.31 0.22 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.45 8.12 -51.92 -0.42 0.03 16 32 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.79 6.55 -51.93 -0.34 0.45 16 35 H 0.34 3.69 8.73 -39.29 -0.34 3.35 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.09 0.52 7.87 -51.93 -0.41 0.11 16 42 H 0.05 0.30 8.06 -51.93 -0.42 -0.12 16 43 H 0.13 0.67 8.00 -52.49 -0.42 0.25 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -30.71 389.95 -9.48 -40.18 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.17 Total: -2.33 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.86 Total: -9.07 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.35 Total: -49.59 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.71 -9.48 -40.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570323090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.120 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds