Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 N 1.46897 * 109.47528 * 179.97438 * 4 3 2 6 6 C 1.46894 * 110.99995 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47173 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.47011 * 54.99886 * 7 6 5 9 9 C 1.47204 * 109.46564 * 295.00286 * 7 6 5 10 10 N 6.93945 * 87.71933 * 354.54752 * 2 1 3 11 11 C 1.52994 * 109.46978 * 175.00515 * 7 6 5 12 12 C 1.50708 * 109.46794 * 184.99957 * 11 7 6 13 13 H 1.07999 * 120.00068 * 0.02562 * 12 11 7 14 14 C 1.37878 * 119.99929 * 179.97438 * 12 11 7 15 15 N 1.31511 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99897 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47283 * 120.00031 * 16 14 12 19 19 H 1.48499 * 109.47310 * 239.99941 * 16 14 12 20 20 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 21 21 C 1.50695 * 109.46944 * 66.04457 * 20 2 1 22 22 C 1.38238 * 119.97726 * 269.72330 * 21 20 2 23 23 C 1.38199 * 120.02708 * 179.72593 * 22 21 20 24 24 C 1.38465 * 119.97288 * 0.57577 * 23 22 21 25 25 F 1.35102 * 120.02543 * 179.67928 * 24 23 22 26 26 C 1.38462 * 119.94590 * 359.70089 * 24 23 22 27 27 C 1.38195 * 119.97626 * 0.02562 * 26 24 23 28 28 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 29 29 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 31 31 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 32 32 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 33 33 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 34 34 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 35 35 H 1.00902 * 110.99922 * 56.04116 * 5 4 3 36 36 H 1.08998 * 109.47656 * 300.00373 * 6 5 4 37 37 H 1.09001 * 109.46867 * 60.00585 * 6 5 4 38 38 H 1.09003 * 109.47025 * 304.99405 * 11 7 6 39 39 H 1.09000 * 109.47561 * 65.00094 * 11 7 6 40 40 H 0.97000 * 120.00354 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46783 * 186.04686 * 20 2 1 42 42 H 1.09002 * 109.46955 * 306.04307 * 20 2 1 43 43 H 1.08001 * 119.98487 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.01905 * 180.25287 * 23 22 21 45 45 H 1.07998 * 120.00657 * 179.97438 * 26 24 23 46 46 H 1.07992 * 119.98776 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 7 2.1573 3.4291 -1.3180 6 6 1.8266 4.1199 -2.5714 7 6 2.3901 5.5419 -2.5341 8 1 3.4598 5.5035 -2.3281 9 6 1.7139 6.3100 -1.4760 10 7 1.1929 6.9026 -0.6589 11 6 2.1549 6.2193 -3.8856 12 6 2.8168 7.5732 -3.8909 13 1 3.3521 7.9160 -3.0177 14 6 2.7399 8.3739 -5.0107 15 7 2.0894 7.9558 -6.0745 16 14 3.5609 10.0517 -5.0175 17 1 4.2234 10.2839 -3.7089 18 1 4.5743 10.1026 -6.1018 19 1 2.5373 11.1028 -5.2469 20 6 1.9955 -0.7660 1.1376 21 6 1.6370 -2.2204 0.9729 22 6 0.4537 -2.7040 1.4991 23 6 0.1211 -4.0363 1.3437 24 6 0.9794 -4.8896 0.6709 25 9 0.6584 -6.1937 0.5240 26 6 2.1670 -4.4053 0.1492 27 6 2.4947 -3.0713 0.3009 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 0.8310 32 1 3.0797 1.3444 0.1083 33 1 2.0658 1.5016 -2.1491 34 1 0.5471 2.0845 -1.4264 35 1 3.1529 3.4346 -1.1541 36 1 2.2629 3.5785 -3.4108 37 1 0.7437 4.1609 -2.6889 38 1 2.5795 5.6043 -4.6791 39 1 1.0841 6.3378 -4.0512 40 1 2.0349 8.5192 -6.8622 41 1 3.0798 -0.6611 1.1756 42 1 1.5612 -0.3872 2.0628 43 1 -0.2131 -2.0394 2.0285 44 1 -0.8053 -4.4131 1.7514 45 1 2.8373 -5.0700 -0.3755 46 1 3.4207 -2.6933 -0.1063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570323090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -18.153369 kcal Electronic energy + Delta-G solvation = -24746.466853 eV Core-core repulsion = 20970.280911 eV Total energy + Delta-G solvation = -3776.185942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.88638 -40.41553 -38.98661 -38.13421 -36.39225 -35.35750 -33.55285 -32.23638 -32.07975 -29.72552 -28.17873 -27.58461 -25.05397 -23.95503 -23.78672 -23.46056 -22.21726 -21.66522 -18.64813 -18.60504 -18.33746 -17.40132 -16.91026 -16.81330 -16.67843 -16.55197 -16.42270 -15.80961 -15.48001 -15.18189 -15.04848 -14.64874 -14.42835 -14.41723 -14.24509 -14.09236 -13.99753 -13.70138 -13.36640 -13.11863 -13.05568 -12.97440 -12.85178 -12.69157 -12.48674 -12.47327 -12.34114 -12.05514 -11.90579 -11.86821 -11.71537 -11.36795 -11.09431 -10.54992 -10.01996 -9.62321 -9.31751 -9.23490 -8.18779 -6.26834 0.14097 0.31256 1.39792 1.43128 1.53322 2.08973 2.15632 2.42040 2.49545 2.96710 3.16823 3.32111 3.35019 3.58890 3.77949 3.81005 3.99550 4.03912 4.21095 4.26265 4.29880 4.35820 4.41132 4.51326 4.56509 4.69987 4.71901 4.76949 4.79926 4.84783 4.98768 5.01795 5.04837 5.06348 5.08947 5.14453 5.19237 5.29578 5.48692 5.58015 5.63577 5.80431 5.93185 5.96668 6.09042 6.12816 6.23156 6.58077 6.84840 6.95340 7.41883 8.92289 Molecular weight = 319.18amu Principal moments of inertia in cm(-1) A = 0.032183 B = 0.001661 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.808502 B =16852.676502 C =17203.712863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.541 5.541 3 C 0.065 3.935 4 C 0.068 3.932 5 N -0.701 5.701 6 C 0.081 3.919 7 C 0.020 3.980 8 H 0.123 0.877 9 C 0.266 3.734 10 N -0.516 5.516 11 C 0.036 3.964 12 C -0.538 4.538 13 H 0.055 0.945 14 C 0.010 3.990 15 N -0.924 5.924 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.286 1.286 20 C 0.095 3.905 21 C -0.090 4.090 22 C -0.087 4.087 23 C -0.159 4.159 24 C 0.073 3.927 25 F -0.153 7.153 26 C -0.159 4.159 27 C -0.072 4.072 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.352 0.648 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.036 0.964 39 H -0.001 1.001 40 H 0.263 0.737 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.146 0.854 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -27.087 13.821 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.266 5.266 3 C -0.063 4.063 4 C -0.061 4.061 5 N -0.334 5.334 6 C -0.049 4.049 7 C -0.002 4.002 8 H 0.140 0.860 9 C -0.050 4.050 10 N -0.194 5.194 11 C -0.003 4.003 12 C -0.576 4.576 13 H 0.073 0.927 14 C -0.189 4.189 15 N -0.564 5.564 16 Si 0.775 3.225 17 H -0.193 1.193 18 H -0.198 1.198 19 H -0.213 1.213 20 C -0.032 4.032 21 C -0.090 4.090 22 C -0.105 4.105 23 C -0.178 4.178 24 C 0.054 3.946 25 F -0.131 7.131 26 C -0.178 4.178 27 C -0.091 4.091 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.171 0.829 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.164 0.836 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.098 -26.159 14.800 30.056 hybrid contribution 0.441 0.577 -0.602 0.943 sum 0.343 -25.582 14.198 29.260 Atomic orbital electron populations 1.22526 0.87281 1.02357 1.00935 1.61932 1.08365 1.13350 1.42913 1.21973 1.00792 0.87119 0.96461 1.21825 1.00042 0.87093 0.97135 1.60369 1.20746 1.16828 1.35428 1.21822 1.00858 0.90898 0.91329 1.19192 0.99649 0.91886 0.89430 0.85981 1.29384 0.91930 0.91404 0.92282 1.80976 1.11896 1.12259 1.14246 1.19005 0.96218 0.94574 0.90465 1.21603 1.33748 1.02774 0.99446 0.92657 1.25726 0.96016 1.01679 0.95489 1.70038 1.43152 1.38700 1.04499 0.85632 0.78430 0.80083 0.78345 1.19306 1.19833 1.21266 1.21070 1.01458 0.88815 0.91863 1.19934 0.94962 0.95713 0.98441 1.21132 0.96365 0.94464 0.98580 1.21309 1.00844 0.94123 1.01506 1.18044 0.96458 0.78246 1.01879 1.91472 1.93003 1.34414 1.94256 1.21368 0.96400 0.97538 1.02475 1.21115 1.00211 0.91612 0.96147 0.91534 0.90752 0.95313 0.94752 0.89438 0.93786 0.91959 0.82936 0.91486 0.91555 0.94551 0.98226 0.92758 0.88472 0.93162 0.83879 0.83667 0.83604 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.98 127.69 1.15 1.40 16 2 N -0.54 -7.91 4.75 -927.02 -4.41 -12.32 16 3 C 0.06 1.01 5.22 86.30 0.45 1.46 16 4 C 0.07 1.29 5.61 86.30 0.48 1.77 16 5 N -0.70 -15.71 6.20 -513.90 -3.19 -18.89 16 6 C 0.08 2.18 5.05 86.31 0.44 2.62 16 7 C 0.02 0.70 2.35 -12.60 -0.03 0.67 16 8 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 9 C 0.27 10.76 13.67 89.44 1.22 11.99 16 10 N -0.52 -23.07 18.54 20.01 0.37 -22.70 16 11 C 0.04 1.64 4.42 29.85 0.13 1.77 16 12 C -0.54 -28.15 8.60 25.60 0.22 -27.93 16 13 H 0.06 2.86 7.59 -2.91 -0.02 2.84 16 14 C 0.01 0.53 5.46 84.66 0.46 0.99 16 15 N -0.92 -52.79 13.29 21.45 0.28 -52.50 16 16 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 20 C 0.09 1.09 5.12 85.55 0.44 1.53 16 21 C -0.09 -1.10 4.88 -19.86 -0.10 -1.20 16 22 C -0.09 -1.02 7.91 22.26 0.18 -0.85 16 23 C -0.16 -2.10 10.03 22.31 0.22 -1.88 16 24 C 0.07 1.15 7.30 22.38 0.16 1.32 16 25 F -0.15 -2.79 17.27 44.97 0.78 -2.01 16 26 C -0.16 -2.14 10.03 22.31 0.22 -1.92 16 27 C -0.07 -0.88 9.70 22.26 0.22 -0.66 16 28 H 0.07 1.07 6.47 -2.39 -0.02 1.05 16 29 H 0.07 1.02 5.91 -2.38 -0.01 1.00 16 30 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.03 0.62 8.12 -2.38 -0.02 0.60 16 32 H 0.09 1.16 7.93 -2.39 -0.02 1.14 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 1.30 6.55 -2.39 -0.02 1.28 16 35 H 0.35 6.63 8.73 -89.69 -0.78 5.84 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 41 H 0.10 0.92 7.87 -2.39 -0.02 0.90 16 42 H 0.05 0.55 8.06 -2.39 -0.02 0.53 16 43 H 0.14 1.23 8.00 -2.91 -0.02 1.21 16 44 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -64.81 389.95 1.93 -62.88 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.19 Total: 9.27 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.87 Total: -8.91 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -6.94 Total: -106.41 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.81 1.93 -62.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570323090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.729 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds