Wall clock time and date at job start Tue Mar 31 2020 14:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00255 * 2 1 4 4 C 1.38727 * 120.05780 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94749 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05319 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94262 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47239 * 20.00079 * 7 6 5 9 9 C 1.52997 * 109.47240 * 260.00364 * 7 6 5 10 10 C 1.50706 * 109.47550 * 177.28476 * 9 7 6 11 11 H 1.08005 * 119.99443 * 5.44864 * 10 9 7 12 12 C 1.37875 * 120.00215 * 185.44711 * 10 9 7 13 13 N 1.31507 * 119.99778 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99922 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47037 * 90.00030 * 14 12 10 16 16 H 1.48500 * 109.47360 * 210.00199 * 14 12 10 17 17 H 1.48499 * 109.47069 * 330.00235 * 14 12 10 18 18 N 1.46904 * 109.47211 * 140.00052 * 7 6 5 19 19 C 1.46893 * 111.00107 * 253.01965 * 18 7 6 20 20 C 1.53005 * 109.47319 * 174.13815 * 19 18 7 21 21 O 1.42901 * 112.84629 * 289.94637 * 20 19 18 22 22 C 1.42896 * 114.00114 * 297.81109 * 21 20 19 23 23 C 1.53777 * 113.61555 * 158.63758 * 20 19 18 24 24 C 1.53779 * 87.08004 * 220.01899 * 23 20 19 25 25 C 1.53780 * 113.60977 * 61.13762 * 20 19 18 26 26 C 1.38264 * 120.11345 * 0.27520 * 6 5 4 27 27 C 1.38142 * 120.05182 * 359.45511 * 26 6 5 28 28 H 1.08997 * 109.47655 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46886 * 300.00193 * 1 2 3 30 30 H 1.09000 * 109.47052 * 59.99363 * 1 2 3 31 31 H 1.07997 * 120.02654 * 359.95529 * 4 3 2 32 32 H 1.08000 * 119.97420 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.46616 * 297.27810 * 9 7 6 34 34 H 1.08999 * 109.47307 * 57.27912 * 9 7 6 35 35 H 0.97004 * 120.00304 * 179.97438 * 13 12 10 36 36 H 1.00898 * 110.99892 * 129.06086 * 18 7 6 37 37 H 1.09000 * 109.47605 * 294.14065 * 19 18 7 38 38 H 1.09003 * 109.47164 * 54.14003 * 19 18 7 39 39 H 1.09001 * 109.46987 * 65.41580 * 22 21 20 40 40 H 1.08999 * 109.47304 * 185.41386 * 22 21 20 41 41 H 1.09006 * 109.47278 * 305.41712 * 22 21 20 42 42 H 1.09001 * 113.61598 * 334.56668 * 23 20 19 43 43 H 1.09000 * 113.61561 * 105.47050 * 23 20 19 44 44 H 1.08995 * 113.61717 * 270.88498 * 24 23 20 45 45 H 1.09005 * 113.61404 * 139.98205 * 24 23 20 46 46 H 1.09002 * 113.61894 * 254.52717 * 25 20 19 47 47 H 1.09002 * 113.61938 * 25.43940 * 25 20 19 48 48 H 1.08003 * 119.97332 * 179.70137 * 26 6 5 49 49 H 1.08008 * 120.02837 * 180.27249 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0115 4.9034 -0.3545 9 6 3.9952 5.5875 1.4174 10 6 4.7378 6.8989 1.4285 11 1 5.0844 7.3309 0.5013 12 6 4.9745 7.5470 2.6222 13 7 4.5519 7.0210 3.7510 14 14 5.8955 9.1721 2.6359 15 1 4.9275 10.2907 2.5064 16 1 6.6409 9.3078 3.9131 17 1 6.8503 9.2095 1.4992 18 7 3.2629 5.9358 -0.8934 19 6 4.0171 6.1712 -2.1318 20 6 3.1716 7.0099 -3.0923 21 8 2.0578 6.2899 -3.6245 22 6 2.4221 5.1502 -4.4057 23 6 3.9990 7.7454 -4.1597 24 6 3.0573 8.9432 -3.9515 25 6 2.8012 8.3955 -2.5375 26 6 1.9212 3.6047 0.0041 27 6 1.2916 2.3751 -0.0009 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0208 0.3798 -0.0002 32 1 5.1346 2.5748 -0.0019 33 1 2.9699 5.7477 1.7510 34 1 4.4897 4.8842 2.0875 35 1 4.7187 7.4768 4.5909 36 1 3.0554 6.8054 -0.4256 37 1 4.9395 6.7037 -1.8999 38 1 4.2568 5.2157 -2.5984 39 1 2.9060 4.4114 -3.7669 40 1 1.5281 4.7148 -4.8520 41 1 3.1102 5.4551 -5.1943 42 1 5.0277 7.9408 -3.8568 43 1 3.9263 7.3001 -5.1520 44 1 2.1768 8.9231 -4.5936 45 1 3.5675 9.9064 -3.9609 46 1 1.7615 8.4752 -2.2202 47 1 3.5024 8.7687 -1.7910 48 1 1.3344 4.5114 0.0086 49 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573669429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:08 Heat of formation + Delta-G solvation = -39.375668 kcal Electronic energy + Delta-G solvation = -27765.936143 eV Core-core repulsion = 24079.997487 eV Total energy + Delta-G solvation = -3685.938656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.92126 -39.67399 -37.65472 -35.48024 -35.26738 -32.72856 -30.78644 -30.57320 -28.71071 -27.12592 -26.92825 -26.30349 -25.22235 -24.01426 -22.41252 -21.73090 -21.60870 -19.62422 -19.20396 -17.82314 -16.53459 -16.20352 -15.88209 -15.58887 -15.54525 -15.07423 -14.86486 -14.79404 -14.23617 -14.13382 -14.01049 -13.83515 -13.30590 -13.13712 -12.82823 -12.51464 -12.24767 -12.20589 -11.99984 -11.78219 -11.63718 -11.50305 -11.26715 -11.13507 -10.99848 -10.83705 -10.70983 -10.64480 -10.54099 -10.47471 -10.25103 -9.88030 -9.58729 -9.26301 -8.99645 -8.52998 -8.44578 -7.64820 -7.54350 -6.08148 -4.12664 1.82438 1.95346 3.25200 3.32815 3.33881 3.49609 3.86892 4.25217 4.38272 4.50845 4.74540 4.95830 5.00241 5.07399 5.18082 5.19825 5.25173 5.31043 5.39494 5.43015 5.48314 5.53645 5.58712 5.69107 5.78758 5.81452 5.83336 5.85578 5.87378 5.93502 5.96619 6.10112 6.16640 6.23044 6.26002 6.40472 6.43448 6.54028 6.67982 6.75932 6.89030 7.19331 7.24211 7.45371 7.49483 7.57544 7.73014 7.89720 8.00092 8.25171 8.28168 8.93290 9.52129 11.02273 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.005160 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.515184 B = 5425.067085 C = 8272.205918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.325 6.325 3 C 0.104 3.896 4 C -0.156 4.156 5 C -0.087 4.087 6 C -0.082 4.082 7 C 0.128 3.872 8 H 0.049 0.951 9 C 0.021 3.979 10 C -0.526 4.526 11 H 0.053 0.947 12 C 0.064 3.936 13 N -0.888 5.888 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.275 1.275 18 N -0.671 5.671 19 C 0.050 3.950 20 C 0.101 3.899 21 O -0.351 6.351 22 C 0.033 3.967 23 C -0.166 4.166 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.045 4.045 27 C -0.212 4.212 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.022 0.978 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.356 0.644 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.129 0.871 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -5.865 -13.701 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.239 6.239 3 C 0.060 3.940 4 C -0.175 4.175 5 C -0.105 4.105 6 C -0.083 4.083 7 C 0.019 3.981 8 H 0.067 0.933 9 C -0.017 4.017 10 C -0.564 4.564 11 H 0.071 0.929 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.200 1.200 18 N -0.304 5.304 19 C -0.081 4.081 20 C 0.061 3.939 21 O -0.270 6.270 22 C -0.064 4.064 23 C -0.204 4.204 24 C -0.173 4.173 25 C -0.160 4.160 26 C -0.064 4.064 27 C -0.231 4.231 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.177 0.823 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.147 0.853 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.671 -6.456 -13.732 16.199 hybrid contribution 1.286 1.387 0.411 1.935 sum -4.386 -5.069 -13.321 14.912 Atomic orbital electron populations 1.22949 0.79120 1.03152 1.01269 1.86001 1.20821 1.27633 1.89481 1.18938 0.92302 0.83763 0.98984 1.20230 0.91176 0.98172 1.07929 1.20841 0.99608 0.91205 0.98887 1.20136 0.93796 0.95181 0.99208 1.20583 0.93215 0.88396 0.95937 0.93286 1.19425 0.97744 0.95569 0.88939 1.21112 1.36798 1.05824 0.92702 0.92908 1.24964 0.95652 0.97580 0.95664 1.69959 1.45994 1.38856 0.97818 0.86656 0.79999 0.84239 0.77485 1.20545 1.21214 1.19986 1.60373 1.45382 1.19002 1.05627 1.22335 0.94682 0.98962 0.92084 1.22512 0.87383 0.91221 0.92833 1.87895 1.29665 1.40886 1.68517 1.22641 1.00767 0.88756 0.94226 1.23549 0.99295 0.97995 0.99609 1.22762 0.99452 0.97389 0.97674 1.22932 1.03300 0.93054 0.96719 1.20794 0.94430 0.96490 0.94653 1.21199 0.99397 0.92619 1.09870 0.88871 0.92844 0.92973 0.86124 0.86015 0.95971 0.95470 0.92865 0.82317 0.94301 0.91798 0.93620 0.90288 0.94685 0.89411 0.91409 0.90157 0.91627 0.90303 0.88605 0.85268 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.31 16 2 O -0.33 -4.73 10.50 -19.41 -0.20 -4.93 16 3 C 0.10 1.68 6.69 -39.22 -0.26 1.42 16 4 C -0.16 -2.52 9.99 -39.44 -0.39 -2.91 16 5 C -0.09 -1.48 9.66 -39.61 -0.38 -1.87 16 6 C -0.08 -1.53 4.96 -104.60 -0.52 -2.04 16 7 C 0.13 2.56 2.33 -68.86 -0.16 2.40 16 8 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 9 C 0.02 0.51 4.40 -27.88 -0.12 0.38 16 10 C -0.53 -13.73 8.18 -34.44 -0.28 -14.01 16 11 H 0.05 1.33 7.60 -52.48 -0.40 0.93 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 14 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 N -0.67 -12.23 5.47 -107.95 -0.59 -12.82 16 19 C 0.05 0.79 4.77 -3.83 -0.02 0.77 16 20 C 0.10 1.44 0.90 -89.81 -0.08 1.36 16 21 O -0.35 -5.30 10.56 -35.23 -0.37 -5.67 16 22 C 0.03 0.41 10.51 101.05 1.06 1.47 16 23 C -0.17 -2.01 7.19 -25.92 -0.19 -2.20 16 24 C -0.14 -1.60 8.02 -25.92 -0.21 -1.81 16 25 C -0.12 -1.71 6.72 -25.92 -0.17 -1.88 16 26 C -0.05 -0.81 9.31 -39.61 -0.37 -1.18 16 27 C -0.21 -3.39 9.04 -39.43 -0.36 -3.75 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.12 1.91 8.03 -52.49 -0.42 1.49 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.36 7.04 6.64 -39.29 -0.26 6.77 16 37 H 0.04 0.65 7.97 -51.93 -0.41 0.23 16 38 H 0.06 1.01 6.58 -51.93 -0.34 0.67 16 39 H 0.05 0.61 6.81 -51.93 -0.35 0.26 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.38 6.78 -51.93 -0.35 0.03 16 42 H 0.09 1.02 7.98 -51.93 -0.41 0.61 16 43 H 0.07 0.76 6.93 -51.93 -0.36 0.40 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 48 H 0.13 2.35 7.72 -52.48 -0.41 1.94 16 49 H 0.12 1.61 6.30 -52.48 -0.33 1.28 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -29.41 392.19 -9.27 -38.68 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -8.17 Total: 9.00 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -1.56 Total: -20.91 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.15 Total: -37.82 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.58 Total: -10.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.41 -9.27 -38.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573669429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.691 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds