Wall clock time and date at job start Tue Mar 31 2020 14:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00255 * 2 1 4 4 C 1.38727 * 120.05780 * 180.02562 * 3 2 1 5 5 C 1.38144 * 119.94749 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05319 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94262 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47239 * 20.00079 * 7 6 5 9 9 C 1.52997 * 109.47240 * 260.00364 * 7 6 5 10 10 C 1.50706 * 109.47550 * 177.28476 * 9 7 6 11 11 H 1.08005 * 119.99443 * 5.44864 * 10 9 7 12 12 C 1.37875 * 120.00215 * 185.44711 * 10 9 7 13 13 N 1.31507 * 119.99778 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99922 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47037 * 90.00030 * 14 12 10 16 16 H 1.48500 * 109.47360 * 210.00199 * 14 12 10 17 17 H 1.48499 * 109.47069 * 330.00235 * 14 12 10 18 18 N 1.46904 * 109.47211 * 140.00052 * 7 6 5 19 19 C 1.46893 * 111.00107 * 253.01965 * 18 7 6 20 20 C 1.53005 * 109.47319 * 174.13815 * 19 18 7 21 21 O 1.42901 * 112.84629 * 289.94637 * 20 19 18 22 22 C 1.42896 * 114.00114 * 297.81109 * 21 20 19 23 23 C 1.53777 * 113.61555 * 158.63758 * 20 19 18 24 24 C 1.53779 * 87.08004 * 220.01899 * 23 20 19 25 25 C 1.53780 * 113.60977 * 61.13762 * 20 19 18 26 26 C 1.38264 * 120.11345 * 0.27520 * 6 5 4 27 27 C 1.38142 * 120.05182 * 359.45511 * 26 6 5 28 28 H 1.08997 * 109.47655 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46886 * 300.00193 * 1 2 3 30 30 H 1.09000 * 109.47052 * 59.99363 * 1 2 3 31 31 H 1.07997 * 120.02654 * 359.95529 * 4 3 2 32 32 H 1.08000 * 119.97420 * 180.02562 * 5 4 3 33 33 H 1.09007 * 109.46616 * 297.27810 * 9 7 6 34 34 H 1.08999 * 109.47307 * 57.27912 * 9 7 6 35 35 H 0.97004 * 120.00304 * 179.97438 * 13 12 10 36 36 H 1.00898 * 110.99892 * 129.06086 * 18 7 6 37 37 H 1.09000 * 109.47605 * 294.14065 * 19 18 7 38 38 H 1.09003 * 109.47164 * 54.14003 * 19 18 7 39 39 H 1.09001 * 109.46987 * 65.41580 * 22 21 20 40 40 H 1.08999 * 109.47304 * 185.41386 * 22 21 20 41 41 H 1.09006 * 109.47278 * 305.41712 * 22 21 20 42 42 H 1.09001 * 113.61598 * 334.56668 * 23 20 19 43 43 H 1.09000 * 113.61561 * 105.47050 * 23 20 19 44 44 H 1.08995 * 113.61717 * 270.88498 * 24 23 20 45 45 H 1.09005 * 113.61404 * 139.98205 * 24 23 20 46 46 H 1.09002 * 113.61894 * 254.52717 * 25 20 19 47 47 H 1.09002 * 113.61938 * 25.43940 * 25 20 19 48 48 H 1.08003 * 119.97332 * 179.70137 * 26 6 5 49 49 H 1.08008 * 120.02837 * 180.27249 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 -0.0005 5 6 4.0562 2.5168 -0.0011 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0115 4.9034 -0.3545 9 6 3.9952 5.5875 1.4174 10 6 4.7378 6.8989 1.4285 11 1 5.0844 7.3309 0.5013 12 6 4.9745 7.5470 2.6222 13 7 4.5519 7.0210 3.7510 14 14 5.8955 9.1721 2.6359 15 1 4.9275 10.2907 2.5064 16 1 6.6409 9.3078 3.9131 17 1 6.8503 9.2095 1.4992 18 7 3.2629 5.9358 -0.8934 19 6 4.0171 6.1712 -2.1318 20 6 3.1716 7.0099 -3.0923 21 8 2.0578 6.2899 -3.6245 22 6 2.4221 5.1502 -4.4057 23 6 3.9990 7.7454 -4.1597 24 6 3.0573 8.9432 -3.9515 25 6 2.8012 8.3955 -2.5375 26 6 1.9212 3.6047 0.0041 27 6 1.2916 2.3751 -0.0009 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 4.0208 0.3798 -0.0002 32 1 5.1346 2.5748 -0.0019 33 1 2.9699 5.7477 1.7510 34 1 4.4897 4.8842 2.0875 35 1 4.7187 7.4768 4.5909 36 1 3.0554 6.8054 -0.4256 37 1 4.9395 6.7037 -1.8999 38 1 4.2568 5.2157 -2.5984 39 1 2.9060 4.4114 -3.7669 40 1 1.5281 4.7148 -4.8520 41 1 3.1102 5.4551 -5.1943 42 1 5.0277 7.9408 -3.8568 43 1 3.9263 7.3001 -5.1520 44 1 2.1768 8.9231 -4.5936 45 1 3.5675 9.9064 -3.9609 46 1 1.7615 8.4752 -2.2202 47 1 3.5024 8.7687 -1.7910 48 1 1.3344 4.5114 0.0086 49 1 0.2130 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573669429.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:07 Heat of formation + Delta-G solvation = -56.250006 kcal Electronic energy + Delta-G solvation = -27766.667869 eV Core-core repulsion = 24079.997487 eV Total energy + Delta-G solvation = -3686.670382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12666 -40.81235 -38.97387 -36.88479 -36.40155 -34.71312 -32.21464 -31.90373 -30.27717 -28.33220 -27.92858 -27.57718 -26.38546 -25.61487 -23.82543 -23.15473 -22.84525 -21.14016 -20.28326 -19.00638 -18.52285 -17.42779 -17.13928 -16.79321 -16.59712 -16.54587 -16.24244 -16.01173 -15.77005 -15.47433 -15.19284 -15.02421 -14.51926 -14.40687 -14.34394 -13.96363 -13.55415 -13.49597 -13.33885 -13.20855 -12.99539 -12.83472 -12.67858 -12.51268 -12.37234 -12.26775 -12.18245 -11.98212 -11.85228 -11.65712 -11.62162 -11.33080 -11.17502 -10.95149 -10.58338 -10.18621 -9.83483 -9.14486 -8.89673 -8.18519 -6.30163 0.50151 0.60614 1.40331 1.40526 1.50544 2.39748 2.44875 2.79352 2.92052 3.13268 3.31227 3.70556 3.84171 3.92676 3.97468 4.00140 4.04875 4.25508 4.36170 4.42411 4.44300 4.48372 4.54467 4.56175 4.60328 4.64211 4.69732 4.71194 4.76442 4.82631 4.83314 4.86229 4.91996 4.95709 5.06062 5.13785 5.21322 5.33293 5.35833 5.41417 5.45317 5.49715 5.56859 5.80853 5.84822 5.91178 6.18646 6.39212 6.41236 6.53873 6.68279 6.84673 7.39077 8.92460 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008080 B = 0.005160 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3464.515184 B = 5425.067085 C = 8272.205918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.107 3.893 4 C -0.160 4.160 5 C -0.092 4.092 6 C -0.106 4.106 7 C 0.144 3.856 8 H 0.043 0.957 9 C 0.033 3.967 10 C -0.530 4.530 11 H 0.061 0.939 12 C 0.008 3.992 13 N -0.929 5.929 14 Si 0.957 3.043 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.263 1.263 18 N -0.667 5.667 19 C 0.051 3.949 20 C 0.097 3.903 21 O -0.370 6.370 22 C 0.030 3.970 23 C -0.156 4.156 24 C -0.123 4.123 25 C -0.131 4.131 26 C -0.057 4.057 27 C -0.211 4.211 28 H 0.122 0.878 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.130 0.870 33 H -0.006 1.006 34 H -0.007 1.007 35 H 0.262 0.738 36 H 0.344 0.656 37 H 0.032 0.968 38 H 0.066 0.934 39 H 0.031 0.969 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.118 0.882 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 -6.031 -15.737 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.062 3.938 4 C -0.178 4.178 5 C -0.111 4.111 6 C -0.107 4.107 7 C 0.034 3.966 8 H 0.061 0.939 9 C -0.004 4.004 10 C -0.568 4.568 11 H 0.079 0.921 12 C -0.190 4.190 13 N -0.569 5.569 14 Si 0.782 3.218 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.188 1.188 18 N -0.298 5.298 19 C -0.078 4.078 20 C 0.057 3.943 21 O -0.288 6.288 22 C -0.066 4.066 23 C -0.194 4.194 24 C -0.161 4.161 25 C -0.169 4.169 26 C -0.075 4.075 27 C -0.229 4.229 28 H 0.140 0.860 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.050 0.950 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.136 0.864 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.762 -6.636 -15.798 18.078 hybrid contribution 1.214 1.297 1.051 2.064 sum -4.548 -5.339 -14.747 16.330 Atomic orbital electron populations 1.23297 0.76810 1.05419 1.01951 1.86002 1.23190 1.26567 1.89054 1.19065 0.92506 0.84424 0.97793 1.20473 0.91746 0.98407 1.07221 1.20973 1.00124 0.91241 0.98760 1.20063 0.94361 0.94789 1.01471 1.20257 0.93447 0.89536 0.93333 0.93898 1.19210 0.95274 0.94691 0.91240 1.21448 1.36171 1.06234 0.92981 0.92086 1.25842 0.96617 1.01264 0.95289 1.70104 1.47679 1.40669 0.98492 0.85563 0.78824 0.79798 0.77577 1.19722 1.21322 1.18755 1.60438 1.45443 1.18045 1.05836 1.22391 0.94606 0.99448 0.91391 1.22545 0.87569 0.90796 0.93420 1.87871 1.30279 1.41716 1.68974 1.22766 1.01925 0.87745 0.94139 1.23507 0.99227 0.97330 0.99362 1.22714 0.99647 0.97970 0.95730 1.22957 1.02360 0.93548 0.98013 1.20769 0.94163 0.97040 0.95537 1.21382 1.00690 0.91820 1.09045 0.85961 0.92427 0.91962 0.84095 0.85163 0.98769 0.98898 0.92898 0.83600 0.94950 0.91592 0.95011 0.88746 0.92808 0.88869 0.89999 0.89629 0.90135 0.91407 0.89569 0.86386 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.98 10.50 -92.36 -0.97 -9.95 16 3 C 0.11 3.31 6.69 22.51 0.15 3.46 16 4 C -0.16 -5.01 9.99 22.36 0.22 -4.79 16 5 C -0.09 -3.19 9.66 22.25 0.22 -2.97 16 6 C -0.11 -4.05 4.96 -19.85 -0.10 -4.14 16 7 C 0.14 5.99 2.33 44.17 0.10 6.09 16 8 H 0.04 1.80 7.45 -2.39 -0.02 1.79 16 9 C 0.03 1.73 4.40 29.85 0.13 1.86 16 10 C -0.53 -28.46 8.18 25.60 0.21 -28.25 16 11 H 0.06 3.11 7.60 -2.91 -0.02 3.09 16 12 C 0.01 0.46 5.46 84.66 0.46 0.92 16 13 N -0.93 -55.59 13.29 21.45 0.28 -55.31 16 14 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 N -0.67 -25.09 5.47 -495.45 -2.71 -27.80 16 19 C 0.05 1.65 4.77 86.31 0.41 2.06 16 20 C 0.10 2.69 0.90 -10.27 -0.01 2.68 16 21 O -0.37 -10.79 10.56 -148.98 -1.57 -12.37 16 22 C 0.03 0.71 10.51 113.37 1.19 1.90 16 23 C -0.16 -3.44 7.19 31.12 0.22 -3.21 16 24 C -0.12 -2.67 8.02 31.12 0.25 -2.42 16 25 C -0.13 -3.60 6.72 31.12 0.21 -3.39 16 26 C -0.06 -2.06 9.31 22.25 0.21 -1.86 16 27 C -0.21 -6.58 9.04 22.37 0.20 -6.38 16 28 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.06 1.01 7.66 -2.39 -0.02 0.99 16 31 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.13 4.13 8.03 -2.91 -0.02 4.11 16 33 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.34 14.21 6.64 -89.70 -0.60 13.62 16 37 H 0.03 1.08 7.97 -2.39 -0.02 1.06 16 38 H 0.07 2.08 6.58 -2.39 -0.02 2.06 16 39 H 0.03 0.82 6.81 -2.39 -0.02 0.80 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.04 6.78 -2.38 -0.02 1.02 16 42 H 0.09 1.96 7.98 -2.39 -0.02 1.94 16 43 H 0.08 1.58 6.93 -2.39 -0.02 1.57 16 44 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 47 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 48 H 0.12 4.48 7.72 -2.91 -0.02 4.46 16 49 H 0.14 3.65 6.30 -2.91 -0.02 3.63 16 Total: -1.00 -64.65 392.19 2.58 -62.06 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: 0.33 Total: 35.33 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 5.19 Total: -36.97 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.43 Total: -83.11 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -2.54 Total: -22.32 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -64.65 2.58 -62.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573669429.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.815 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds