Wall clock time and date at job start Tue Mar 31 2020 12:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 N 1.46500 * 109.47366 * 120.00473 * 2 1 3 5 5 C 1.46503 * 119.99691 * 295.57633 * 4 2 1 6 6 C 1.50707 * 109.47072 * 270.00252 * 5 4 2 7 7 H 1.07996 * 119.99973 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99647 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00688 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47366 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46990 * 120.00053 * 10 8 6 13 13 H 1.48497 * 109.47496 * 240.00029 * 10 8 6 14 14 C 1.34774 * 120.00458 * 115.57835 * 4 2 1 15 15 O 1.21276 * 120.00018 * 184.84908 * 14 4 2 16 16 C 1.50695 * 119.99859 * 4.84880 * 14 4 2 17 17 H 1.09008 * 109.47286 * 47.87642 * 16 14 4 18 18 C 1.52999 * 109.47482 * 287.87625 * 16 14 4 19 19 O 1.42900 * 109.47407 * 167.87279 * 16 14 4 20 20 C 1.42894 * 114.00243 * 210.00258 * 19 16 14 21 21 C 1.53005 * 109.46909 * 179.97438 * 20 19 16 22 22 C 1.50706 * 109.47002 * 179.97438 * 21 20 19 23 23 C 1.38227 * 120.00221 * 269.72628 * 22 21 20 24 24 C 1.38238 * 119.99776 * 179.76507 * 23 22 21 25 25 C 1.38235 * 120.00058 * 0.48792 * 24 23 22 26 26 C 1.38238 * 119.99656 * 359.78722 * 25 24 23 27 27 C 1.38228 * 120.00207 * 359.96189 * 26 25 24 28 28 H 1.09002 * 109.46983 * 299.99614 * 1 2 3 29 29 H 1.09005 * 109.47194 * 59.99756 * 1 2 3 30 30 H 1.08999 * 109.47442 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 240.00386 * 2 1 3 32 32 H 1.08997 * 109.47603 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47194 * 300.00244 * 3 2 1 34 34 H 1.09003 * 109.47133 * 59.99854 * 3 2 1 35 35 H 1.09001 * 109.47116 * 29.99810 * 5 4 2 36 36 H 1.08997 * 109.47426 * 149.99817 * 5 4 2 37 37 H 0.96999 * 120.00671 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47738 * 185.10931 * 18 16 14 39 39 H 1.09004 * 109.46679 * 305.11183 * 18 16 14 40 40 H 1.09007 * 109.47163 * 65.10546 * 18 16 14 41 41 H 1.08996 * 109.47285 * 59.99898 * 20 19 16 42 42 H 1.09006 * 109.47122 * 299.99581 * 20 19 16 43 43 H 1.09004 * 109.46999 * 60.00177 * 21 20 19 44 44 H 1.08998 * 109.47019 * 300.00004 * 21 20 19 45 45 H 1.07994 * 120.00336 * 0.02562 * 23 22 21 46 46 H 1.08003 * 119.99898 * 180.25320 * 24 23 22 47 47 H 1.08003 * 119.99947 * 179.76751 * 25 24 23 48 48 H 1.08004 * 119.99906 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00118 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7461 -0.1362 2.5245 6 6 2.8610 0.7988 2.9168 7 1 3.6897 0.9632 2.2440 8 6 2.8231 1.4442 4.1345 9 7 1.8142 1.2437 4.9540 10 14 4.2054 2.6027 4.6210 11 1 5.2140 2.6546 3.5324 12 1 3.6542 3.9626 4.8497 13 1 4.8465 2.1124 5.8675 14 6 2.7181 -1.8361 1.0744 15 8 3.0465 -2.4541 2.0648 16 6 3.0924 -2.3488 -0.2923 17 1 3.5196 -1.5366 -0.8806 18 6 1.8439 -2.8857 -0.9952 19 8 4.0534 -3.3982 -0.1607 20 6 4.9560 -3.5013 -1.2636 21 6 5.9348 -4.6510 -1.0158 22 6 6.8864 -4.7602 -2.1793 23 6 6.5741 -5.5716 -3.2539 24 6 7.4448 -5.6679 -4.3233 25 6 8.6325 -4.9607 -4.3134 26 6 8.9474 -4.1537 -3.2361 27 6 8.0744 -4.0533 -2.1691 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.8036 0.4109 2.5037 36 1 1.6796 -0.9470 3.2500 37 1 1.7873 1.6981 5.8106 38 1 2.1281 -3.3385 -1.9451 39 1 1.3657 -3.6349 -0.3642 40 1 1.1485 -2.0662 -1.1769 41 1 5.5105 -2.5687 -1.3678 42 1 4.3932 -3.6935 -2.1771 43 1 5.3806 -5.5838 -0.9114 44 1 6.4976 -4.4585 -0.1024 45 1 5.6479 -6.1269 -3.2600 46 1 7.1988 -6.2987 -5.1647 47 1 9.3145 -5.0389 -5.1472 48 1 9.8756 -3.6015 -3.2282 49 1 8.3206 -3.4232 -1.3273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575951128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:03 Heat of formation + Delta-G solvation = -64.815074 kcal Electronic energy + Delta-G solvation = -27020.328037 eV Core-core repulsion = 23333.286246 eV Total energy + Delta-G solvation = -3687.041791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.75091 -39.42339 -37.53730 -35.86669 -33.76895 -32.85901 -31.26809 -31.11830 -30.79638 -28.52402 -27.27783 -26.75429 -24.38261 -23.48393 -22.79903 -22.35280 -21.18633 -20.99763 -18.37972 -17.07384 -17.02023 -16.43485 -16.27751 -15.89645 -15.28824 -15.10546 -14.88917 -14.55644 -14.15466 -13.87170 -13.62284 -13.56333 -13.36425 -13.13499 -13.02076 -12.70014 -12.36741 -12.26335 -12.16409 -11.96984 -11.62515 -11.55809 -11.44688 -11.25317 -11.17929 -11.08968 -10.98978 -10.87062 -10.83898 -10.56414 -10.35052 -9.99931 -9.64482 -9.51184 -9.15238 -8.94970 -8.66864 -8.40778 -7.62692 -6.01770 -4.05171 1.09770 1.16769 3.27158 3.30477 3.38631 3.42074 3.46156 3.60672 4.17700 4.46835 4.61751 4.69959 4.80289 4.88162 4.91888 4.97749 5.05159 5.18054 5.23141 5.28730 5.30010 5.32601 5.35621 5.36269 5.53459 5.58917 5.63112 5.69154 5.75131 5.80582 5.87974 5.96843 5.99842 6.10777 6.20851 6.23054 6.24215 6.27848 6.36457 6.43986 6.60923 6.77491 6.95521 7.05223 7.29213 7.50489 7.60484 7.95634 8.27177 8.45311 8.93917 9.13422 9.59047 11.06378 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.002895 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.426636 B = 9668.135678 C =10661.666147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.127 3.873 3 C -0.156 4.156 4 N -0.591 5.591 5 C 0.247 3.753 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.509 3.491 15 O -0.522 6.522 16 C 0.070 3.930 17 H 0.077 0.923 18 C -0.174 4.174 19 O -0.356 6.356 20 C 0.067 3.933 21 C -0.080 4.080 22 C -0.078 4.078 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.119 4.119 27 C -0.114 4.114 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -8.977 -20.865 23.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.214 4.214 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.294 3.706 15 O -0.397 6.397 16 C 0.009 3.991 17 H 0.095 0.905 18 C -0.232 4.232 19 O -0.274 6.274 20 C -0.010 4.010 21 C -0.118 4.118 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.137 4.137 27 C -0.132 4.132 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.973 -9.377 -19.966 22.853 hybrid contribution 0.783 0.948 0.031 1.230 sum 6.757 -8.429 -19.935 22.674 Atomic orbital electron populations 1.22201 0.95584 1.01849 1.02530 1.21138 0.94153 0.94363 0.88095 1.22134 1.01513 0.95496 1.02291 1.48271 1.53069 1.22326 1.08852 1.19247 0.96452 0.94240 0.77258 1.21477 1.06886 1.25154 1.02249 0.92369 1.24925 0.95987 0.97102 0.96162 1.69942 1.30528 1.43219 1.09725 0.86494 0.82239 0.80382 0.78619 1.19848 1.21049 1.20938 1.19996 0.79452 0.81438 0.89725 1.90677 1.53105 1.56860 1.39094 1.21994 0.90556 0.90476 0.96091 0.90474 1.22377 0.97445 1.02740 1.00634 1.88030 1.44914 1.52092 1.42339 1.22490 0.91031 0.98053 0.89471 1.20476 0.95644 0.99235 0.96415 1.19795 0.95316 0.97000 0.95681 1.21106 0.99700 0.98992 0.93540 1.21146 0.94595 0.99707 0.98415 1.21159 0.97204 0.97523 0.98515 1.21171 0.99567 0.98979 0.94001 1.21170 0.93964 0.99219 0.98847 0.91267 0.92206 0.92776 0.90614 0.92611 0.93275 0.90009 0.94731 0.93925 0.92848 0.91843 0.91195 0.90388 0.93223 0.93342 0.89951 0.89709 0.85940 0.86117 0.86233 0.86039 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.86 37.15 0.33 -1.99 16 2 C 0.13 2.04 2.44 -67.93 -0.17 1.88 16 3 C -0.16 -2.55 8.37 37.16 0.31 -2.24 16 4 N -0.59 -12.51 2.39 -167.47 -0.40 -12.91 16 5 C 0.25 6.39 4.51 -5.19 -0.02 6.37 16 6 C -0.52 -14.43 7.84 -34.44 -0.27 -14.70 16 7 H 0.06 1.62 7.55 -52.49 -0.40 1.23 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.51 11.10 7.02 -10.99 -0.08 11.02 16 15 O -0.52 -14.02 16.10 -14.05 -0.23 -14.25 16 16 C 0.07 1.15 2.28 -27.89 -0.06 1.09 16 17 H 0.08 1.11 6.91 -51.92 -0.36 0.76 16 18 C -0.17 -2.25 9.14 37.16 0.34 -1.91 16 19 O -0.36 -6.06 9.55 -54.84 -0.52 -6.58 16 20 C 0.07 0.84 5.73 37.16 0.21 1.05 16 21 C -0.08 -0.91 5.72 -27.88 -0.16 -1.07 16 22 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 23 C -0.12 -1.06 9.70 -39.59 -0.38 -1.45 16 24 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 25 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 26 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 27 C -0.11 -1.14 9.70 -39.59 -0.38 -1.52 16 28 H 0.07 1.12 6.84 -51.93 -0.36 0.76 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.73 7.59 -51.93 -0.39 0.34 16 31 H 0.08 1.02 4.34 -51.93 -0.23 0.79 16 32 H 0.05 0.96 8.01 -51.93 -0.42 0.54 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.57 6.95 -51.93 -0.36 1.21 16 35 H 0.03 0.90 6.67 -51.93 -0.35 0.55 16 36 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.06 0.66 7.78 -51.93 -0.40 0.26 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.90 4.94 -51.93 -0.26 0.65 16 41 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 42 H 0.05 0.52 7.78 -51.93 -0.40 0.12 16 43 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 44 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 47 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 48 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -33.92 394.22 -9.73 -43.66 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.08 Total: 0.57 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.16 Total: -7.49 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.34 Total: -38.67 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.75 Total: -20.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.92 -9.73 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575951128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.158 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds