Wall clock time and date at job start Tue Mar 31 2020 12:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47305 * 2 1 4 4 N 1.46500 * 109.47366 * 120.00473 * 2 1 3 5 5 C 1.46503 * 119.99691 * 295.57633 * 4 2 1 6 6 C 1.50707 * 109.47072 * 270.00252 * 5 4 2 7 7 H 1.07996 * 119.99973 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99647 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00688 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99785 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47366 * 0.02562 * 10 8 6 12 12 H 1.48507 * 109.46990 * 120.00053 * 10 8 6 13 13 H 1.48497 * 109.47496 * 240.00029 * 10 8 6 14 14 C 1.34774 * 120.00458 * 115.57835 * 4 2 1 15 15 O 1.21276 * 120.00018 * 184.84908 * 14 4 2 16 16 C 1.50695 * 119.99859 * 4.84880 * 14 4 2 17 17 H 1.09008 * 109.47286 * 47.87642 * 16 14 4 18 18 C 1.52999 * 109.47482 * 287.87625 * 16 14 4 19 19 O 1.42900 * 109.47407 * 167.87279 * 16 14 4 20 20 C 1.42894 * 114.00243 * 210.00258 * 19 16 14 21 21 C 1.53005 * 109.46909 * 179.97438 * 20 19 16 22 22 C 1.50706 * 109.47002 * 179.97438 * 21 20 19 23 23 C 1.38227 * 120.00221 * 269.72628 * 22 21 20 24 24 C 1.38238 * 119.99776 * 179.76507 * 23 22 21 25 25 C 1.38235 * 120.00058 * 0.48792 * 24 23 22 26 26 C 1.38238 * 119.99656 * 359.78722 * 25 24 23 27 27 C 1.38228 * 120.00207 * 359.96189 * 26 25 24 28 28 H 1.09002 * 109.46983 * 299.99614 * 1 2 3 29 29 H 1.09005 * 109.47194 * 59.99756 * 1 2 3 30 30 H 1.08999 * 109.47442 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46983 * 240.00386 * 2 1 3 32 32 H 1.08997 * 109.47603 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47194 * 300.00244 * 3 2 1 34 34 H 1.09003 * 109.47133 * 59.99854 * 3 2 1 35 35 H 1.09001 * 109.47116 * 29.99810 * 5 4 2 36 36 H 1.08997 * 109.47426 * 149.99817 * 5 4 2 37 37 H 0.96999 * 120.00671 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47738 * 185.10931 * 18 16 14 39 39 H 1.09004 * 109.46679 * 305.11183 * 18 16 14 40 40 H 1.09007 * 109.47163 * 65.10546 * 18 16 14 41 41 H 1.08996 * 109.47285 * 59.99898 * 20 19 16 42 42 H 1.09006 * 109.47122 * 299.99581 * 20 19 16 43 43 H 1.09004 * 109.46999 * 60.00177 * 21 20 19 44 44 H 1.08998 * 109.47019 * 300.00004 * 21 20 19 45 45 H 1.07994 * 120.00336 * 0.02562 * 23 22 21 46 46 H 1.08003 * 119.99898 * 180.25320 * 24 23 22 47 47 H 1.08003 * 119.99947 * 179.76751 * 25 24 23 48 48 H 1.08004 * 119.99906 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.00118 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7461 -0.1362 2.5245 6 6 2.8610 0.7988 2.9168 7 1 3.6897 0.9632 2.2440 8 6 2.8231 1.4442 4.1345 9 7 1.8142 1.2437 4.9540 10 14 4.2054 2.6027 4.6210 11 1 5.2140 2.6546 3.5324 12 1 3.6542 3.9626 4.8497 13 1 4.8465 2.1124 5.8675 14 6 2.7181 -1.8361 1.0744 15 8 3.0465 -2.4541 2.0648 16 6 3.0924 -2.3488 -0.2923 17 1 3.5196 -1.5366 -0.8806 18 6 1.8439 -2.8857 -0.9952 19 8 4.0534 -3.3982 -0.1607 20 6 4.9560 -3.5013 -1.2636 21 6 5.9348 -4.6510 -1.0158 22 6 6.8864 -4.7602 -2.1793 23 6 6.5741 -5.5716 -3.2539 24 6 7.4448 -5.6679 -4.3233 25 6 8.6325 -4.9607 -4.3134 26 6 8.9474 -4.1537 -3.2361 27 6 8.0744 -4.0533 -2.1691 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.8036 0.4109 2.5037 36 1 1.6796 -0.9470 3.2500 37 1 1.7873 1.6981 5.8106 38 1 2.1281 -3.3385 -1.9451 39 1 1.3657 -3.6349 -0.3642 40 1 1.1485 -2.0662 -1.1769 41 1 5.5105 -2.5687 -1.3678 42 1 4.3932 -3.6935 -2.1771 43 1 5.3806 -5.5838 -0.9114 44 1 6.4976 -4.4585 -0.1024 45 1 5.6479 -6.1269 -3.2600 46 1 7.1988 -6.2987 -5.1647 47 1 9.3145 -5.0389 -5.1472 48 1 9.8756 -3.6015 -3.2282 49 1 8.3206 -3.4232 -1.3273 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575951128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:03 Heat of formation + Delta-G solvation = -83.685308 kcal Electronic energy + Delta-G solvation = -27021.146312 eV Core-core repulsion = 23333.286246 eV Total energy + Delta-G solvation = -3687.860066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22475 -40.22465 -38.80795 -37.53626 -35.06929 -34.53265 -32.48436 -32.43112 -31.76463 -29.46949 -29.12766 -28.00516 -25.85355 -24.73556 -23.89069 -23.45041 -22.53389 -21.84774 -19.91634 -18.64779 -18.43710 -17.90762 -17.39689 -16.97718 -16.73770 -16.35586 -16.04587 -15.83613 -15.51287 -15.26078 -14.99843 -14.54059 -14.43991 -14.24444 -14.09736 -13.89000 -13.60236 -13.55795 -13.42052 -13.34344 -13.08026 -12.93614 -12.82478 -12.71845 -12.54373 -12.37119 -12.23111 -12.10980 -12.06629 -11.93608 -11.81255 -11.61357 -11.52969 -10.85187 -10.62639 -10.31768 -9.81303 -9.63799 -9.44731 -8.20528 -6.32671 0.41379 0.50769 1.34518 1.37374 1.48298 1.73579 2.00337 2.38261 2.77226 2.99188 3.09456 3.54724 3.80867 3.87442 3.94598 3.99246 4.04825 4.18382 4.20452 4.27325 4.29533 4.32397 4.36549 4.41945 4.61551 4.63232 4.65520 4.76263 4.83756 4.87241 4.92228 4.96740 5.00838 5.05020 5.09140 5.16823 5.18491 5.19448 5.24268 5.46535 5.56851 5.58450 5.63593 5.63830 5.72491 5.85480 6.09380 6.12991 6.14457 6.73322 6.79732 7.29667 7.46845 8.87232 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.002895 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.426636 B = 9668.135678 C =10661.666147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 C -0.152 4.152 4 N -0.593 5.593 5 C 0.264 3.736 6 C -0.526 4.526 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.930 5.930 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.269 1.269 13 H -0.285 1.285 14 C 0.494 3.506 15 O -0.589 6.589 16 C 0.080 3.920 17 H 0.104 0.896 18 C -0.167 4.167 19 O -0.389 6.389 20 C 0.065 3.935 21 C -0.076 4.076 22 C -0.091 4.091 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.132 4.132 28 H 0.039 0.961 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.029 0.971 36 H -0.010 1.010 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.135 0.865 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.137 0.863 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.510 -8.568 -24.923 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 C -0.210 4.210 4 N -0.325 5.325 5 C 0.143 3.857 6 C -0.565 4.565 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.787 3.213 11 H -0.191 1.191 12 H -0.194 1.194 13 H -0.211 1.211 14 C 0.282 3.718 15 O -0.470 6.470 16 C 0.019 3.981 17 H 0.121 0.879 18 C -0.224 4.224 19 O -0.308 6.308 20 C -0.011 4.011 21 C -0.113 4.113 22 C -0.091 4.091 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.150 4.150 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.008 0.992 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.153 0.847 46 H 0.163 0.837 47 H 0.161 0.839 48 H 0.155 0.845 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.602 -8.945 -24.085 26.527 hybrid contribution 0.597 0.780 1.249 1.589 sum 7.200 -8.165 -22.837 25.298 Atomic orbital electron populations 1.22177 0.93848 1.02505 1.03137 1.21607 0.95589 0.94200 0.87027 1.22085 1.00656 0.95604 1.02662 1.48313 1.52863 1.22537 1.08770 1.18664 0.95886 0.91986 0.79123 1.21673 1.07037 1.25289 1.02460 0.92814 1.25814 0.98472 0.98838 0.96152 1.70062 1.32408 1.44361 1.10194 0.85443 0.79140 0.78659 0.78041 1.19092 1.19420 1.21097 1.21184 0.78180 0.80787 0.91621 1.90631 1.55633 1.58819 1.41889 1.21965 0.92384 0.91459 0.92321 0.87891 1.22369 0.95714 1.03000 1.01296 1.88005 1.45811 1.52155 1.44794 1.22699 0.90807 0.98499 0.89132 1.20404 0.95559 0.98966 0.96386 1.19732 0.95348 0.98207 0.95796 1.21313 1.00554 0.98762 0.93400 1.21480 0.94275 0.99620 0.98733 1.21512 0.97571 0.96693 0.98835 1.21424 0.99958 0.99289 0.93830 1.21290 0.94521 0.99767 0.99466 0.94173 0.88012 0.92155 0.86702 0.93901 0.88810 0.93652 0.95336 0.99214 0.92581 0.88294 0.92905 0.88619 0.93195 0.90644 0.89780 0.91593 0.84663 0.83739 0.83886 0.84499 0.86207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 8.86 71.98 0.64 -3.52 16 2 C 0.12 3.58 2.44 44.99 0.11 3.69 16 3 C -0.15 -4.72 8.37 71.98 0.60 -4.11 16 4 N -0.59 -25.64 2.39 -802.15 -1.91 -27.55 16 5 C 0.26 14.50 4.51 85.63 0.39 14.88 16 6 C -0.53 -30.40 7.84 25.60 0.20 -30.20 16 7 H 0.05 3.08 7.55 -2.91 -0.02 3.06 16 8 C 0.01 0.33 5.46 84.65 0.46 0.79 16 9 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 10 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 C 0.49 22.17 7.02 87.66 0.62 22.78 16 15 O -0.59 -33.69 16.10 15.74 0.25 -33.43 16 16 C 0.08 2.50 2.28 29.85 0.07 2.57 16 17 H 0.10 2.67 6.91 -2.38 -0.02 2.65 16 18 C -0.17 -3.80 9.14 71.98 0.66 -3.14 16 19 O -0.39 -13.12 9.55 -130.23 -1.24 -14.37 16 20 C 0.06 1.55 5.73 71.98 0.41 1.96 16 21 C -0.08 -1.72 5.72 29.85 0.17 -1.54 16 22 C -0.09 -1.79 5.13 -19.87 -0.10 -1.89 16 23 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 24 C -0.12 -1.70 10.05 22.27 0.22 -1.48 16 25 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 26 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 27 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 28 H 0.04 1.28 6.84 -2.39 -0.02 1.27 16 29 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.06 1.50 7.59 -2.39 -0.02 1.49 16 31 H 0.12 2.62 4.34 -2.39 -0.01 2.61 16 32 H 0.04 1.41 8.01 -2.39 -0.02 1.39 16 33 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.04 1.74 6.95 -2.39 -0.02 1.72 16 35 H 0.03 1.58 6.67 -2.39 -0.02 1.56 16 36 H -0.01 -0.67 7.36 -2.39 -0.02 -0.68 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.10 1.60 7.78 -2.39 -0.02 1.58 16 39 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.10 1.81 4.94 -2.38 -0.01 1.80 16 41 H 0.05 1.18 8.08 -2.39 -0.02 1.16 16 42 H 0.08 1.39 7.78 -2.38 -0.02 1.37 16 43 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 44 H 0.07 1.69 8.09 -2.39 -0.02 1.68 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 49 H 0.12 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -80.22 394.22 5.65 -74.57 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.92 Total: 16.64 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.32 Total: -6.73 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.63 Total: -84.37 kcal Atomic # 8 Polarization: -46.81 SS G_CDS: -0.99 Total: -47.80 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -80.22 5.65 -74.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575951128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.112 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds