Wall clock time and date at job start Tue Mar 31 2020 14:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35909 * 116.99645 * 2 1 4 4 C 1.38722 * 120.05405 * 179.97438 * 3 2 1 5 5 C 1.38146 * 119.94492 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05459 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94241 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47428 * 339.99358 * 7 6 5 9 9 C 1.52993 * 109.47352 * 99.99950 * 7 6 5 10 10 C 1.50706 * 109.47305 * 294.49557 * 9 7 6 11 11 H 1.07995 * 119.99490 * 355.59370 * 10 9 7 12 12 C 1.37876 * 120.00190 * 175.60197 * 10 9 7 13 13 N 1.31514 * 119.99857 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 119.99963 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47127 * 90.00369 * 14 12 10 16 16 H 1.48503 * 109.47194 * 210.00420 * 14 12 10 17 17 H 1.48499 * 109.47330 * 330.00311 * 14 12 10 18 18 N 1.46909 * 109.46872 * 219.99835 * 7 6 5 19 19 C 1.46902 * 110.99641 * 154.28890 * 18 7 6 20 20 C 1.53001 * 109.46651 * 174.67347 * 19 18 7 21 21 H 1.09003 * 109.47910 * 304.97861 * 20 19 18 22 22 C 1.53285 * 109.45669 * 184.98938 * 20 19 18 23 23 C 1.53178 * 109.06211 * 182.45014 * 22 20 19 24 24 C 1.53176 * 109.11141 * 56.93715 * 23 22 20 25 25 C 1.53090 * 109.16517 * 302.97599 * 24 23 22 26 26 O 1.42902 * 109.47995 * 65.00096 * 20 19 18 27 27 C 1.38265 * 120.10868 * 0.25206 * 6 5 4 28 28 C 1.38148 * 120.05724 * 359.45073 * 27 6 5 29 29 H 1.08996 * 109.47455 * 300.00287 * 1 2 3 30 30 H 1.09009 * 109.46944 * 60.00616 * 1 2 3 31 31 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.03092 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97467 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.47485 * 54.49414 * 9 7 6 35 35 H 1.08998 * 109.47389 * 174.49332 * 9 7 6 36 36 H 0.96994 * 119.99852 * 179.97438 * 13 12 10 37 37 H 1.00899 * 110.99641 * 30.33850 * 18 7 6 38 38 H 1.09005 * 109.47179 * 54.67728 * 19 18 7 39 39 H 1.09001 * 109.47296 * 294.67185 * 19 18 7 40 40 H 1.08996 * 109.64378 * 62.52995 * 22 20 19 41 41 H 1.09008 * 109.49850 * 302.28028 * 22 20 19 42 42 H 1.08996 * 109.54160 * 297.02422 * 23 22 20 43 43 H 1.08997 * 109.54229 * 176.84900 * 23 22 20 44 44 H 1.09005 * 109.52227 * 62.88128 * 24 23 22 45 45 H 1.09000 * 109.52778 * 183.00299 * 24 23 22 46 46 H 1.08997 * 109.48219 * 177.58791 * 25 24 23 47 47 H 1.09000 * 109.48034 * 297.62466 * 25 24 23 48 48 H 1.07998 * 119.96560 * 179.70855 * 27 6 5 49 49 H 1.08000 * 120.02650 * 180.25372 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4312 1.2850 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3017 3.6760 0.0016 7 6 3.9858 5.0187 0.0028 8 1 5.0111 4.9038 0.3546 9 6 3.9947 5.5878 -1.4173 10 6 4.8498 4.7175 -2.3020 11 1 5.3950 3.8873 -1.8781 12 6 4.9362 4.9814 -3.6525 13 7 5.6828 4.2222 -4.4244 14 14 3.9928 6.4172 -4.3858 15 1 4.8386 7.6372 -4.3461 16 1 3.6361 6.1078 -5.7938 17 1 2.7537 6.6481 -3.6006 18 7 3.2624 5.9360 0.8934 19 6 4.1539 6.9858 1.4045 20 6 3.3402 7.9943 2.2181 21 1 2.5224 8.3780 1.6080 22 6 4.2460 9.1544 2.6463 23 6 3.4382 10.1270 3.5109 24 6 2.8567 9.3693 4.7084 25 6 2.0059 8.2026 4.2000 26 8 2.8084 7.3520 3.3785 27 6 1.9209 3.6048 0.0069 28 6 1.2914 2.3751 0.0001 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0209 0.3801 0.0014 33 1 5.1344 2.5753 0.0019 34 1 2.9765 5.6114 -1.8058 35 1 4.4008 6.5992 -1.4009 36 1 5.7433 4.4076 -5.3745 37 1 2.8237 5.4338 1.6507 38 1 4.6323 7.4953 0.5680 39 1 4.9166 6.5368 2.0407 40 1 4.6177 9.6742 1.7633 41 1 5.0862 8.7664 3.2223 42 1 2.6272 10.5528 2.9201 43 1 4.0889 10.9260 3.8661 44 1 3.6689 8.9858 5.3261 45 1 2.2365 10.0431 5.2997 46 1 1.6243 7.6342 5.0481 47 1 1.1706 8.5892 3.6160 48 1 1.3341 4.5114 0.0120 49 1 0.2128 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582466236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:18 Heat of formation + Delta-G solvation = -91.727338 kcal Electronic energy + Delta-G solvation = -27211.671524 eV Core-core repulsion = 23523.462730 eV Total energy + Delta-G solvation = -3688.208794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09157 -40.36427 -39.11436 -36.92058 -34.95537 -34.50390 -33.39794 -31.95296 -31.21150 -30.41558 -28.30050 -27.26130 -25.65244 -24.63360 -23.77949 -23.25103 -22.38291 -21.23943 -20.81816 -19.11285 -18.86051 -17.53823 -17.30328 -16.98019 -16.68397 -16.56175 -16.13590 -15.83650 -15.60080 -15.27681 -15.18148 -15.13329 -14.74794 -14.44032 -14.29875 -14.22862 -13.93756 -13.57899 -13.50054 -13.42193 -13.19547 -12.84620 -12.69735 -12.56679 -12.19112 -12.10438 -11.98678 -11.88631 -11.73045 -11.63203 -11.53000 -11.46033 -11.28163 -11.12241 -10.69744 -10.30727 -9.82983 -9.30502 -8.92028 -8.21864 -6.22713 0.50800 0.57153 1.35593 1.38405 1.50335 2.40153 2.44886 2.87805 2.89815 3.14418 3.20048 3.88117 3.95480 3.97445 3.98234 4.00928 4.06088 4.15720 4.25346 4.34760 4.37847 4.43912 4.47251 4.57143 4.59109 4.63139 4.68428 4.75435 4.76497 4.79376 4.85168 4.91093 4.96971 4.99850 5.08923 5.15336 5.17944 5.22896 5.24765 5.38048 5.41476 5.45659 5.52466 5.70067 5.76699 5.91639 6.17240 6.37496 6.40191 6.54030 6.60709 6.84070 7.40260 8.94560 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008112 B = 0.004466 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3450.717442 B = 6268.026845 C = 8967.724436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.109 3.891 4 C -0.166 4.166 5 C -0.076 4.076 6 C -0.106 4.106 7 C 0.152 3.848 8 H 0.031 0.969 9 C 0.014 3.986 10 C -0.511 4.511 11 H 0.042 0.958 12 C 0.009 3.991 13 N -0.952 5.952 14 Si 0.938 3.062 15 H -0.268 1.268 16 H -0.289 1.289 17 H -0.249 1.249 18 N -0.678 5.678 19 C 0.067 3.933 20 C 0.102 3.898 21 H 0.062 0.938 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.152 4.152 25 C 0.055 3.945 26 O -0.399 6.399 27 C -0.071 4.071 28 C -0.207 4.207 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.018 0.982 35 H 0.015 0.985 36 H 0.262 0.738 37 H 0.346 0.654 38 H 0.080 0.920 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.053 0.947 48 H 0.137 0.863 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 5.946 17.997 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.065 3.935 4 C -0.185 4.185 5 C -0.095 4.095 6 C -0.106 4.106 7 C 0.043 3.957 8 H 0.049 0.951 9 C -0.024 4.024 10 C -0.550 4.550 11 H 0.060 0.940 12 C -0.187 4.187 13 N -0.593 5.593 14 Si 0.762 3.238 15 H -0.193 1.193 16 H -0.215 1.215 17 H -0.173 1.173 18 N -0.310 5.310 19 C -0.062 4.062 20 C 0.044 3.956 21 H 0.080 0.920 22 C -0.188 4.188 23 C -0.158 4.158 24 C -0.190 4.190 25 C -0.021 4.021 26 O -0.318 6.318 27 C -0.089 4.089 28 C -0.225 4.225 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.165 0.835 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.071 0.929 48 H 0.155 0.845 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.809 5.932 17.370 21.826 hybrid contribution 0.599 0.131 -0.433 0.751 sum -11.210 6.064 16.937 21.196 Atomic orbital electron populations 1.23327 0.76618 1.05465 1.02149 1.86015 1.23415 1.26655 1.89015 1.19043 0.92177 0.84811 0.97517 1.20454 0.92249 0.98265 1.07533 1.20852 0.99572 0.91768 0.97279 1.19794 0.94302 0.94389 1.02146 1.20129 0.93558 0.88210 0.93830 0.95126 1.19412 0.95964 0.95098 0.91904 1.21394 1.27061 1.13615 0.92943 0.93988 1.25813 0.96137 0.99019 0.97762 1.70059 1.42175 1.41396 1.05679 0.85838 0.80535 0.79967 0.77419 1.19270 1.21503 1.17316 1.60529 1.32583 1.15356 1.22485 1.22022 0.93913 0.93308 0.96965 1.22077 0.95514 0.92106 0.85934 0.91991 1.22202 0.98884 0.96599 1.01084 1.21586 0.99918 0.97726 0.96539 1.22173 1.00617 0.97965 0.98246 1.22720 0.92600 0.92380 0.94420 1.87884 1.68538 1.38597 1.36810 1.20909 0.93554 0.97807 0.96657 1.21394 1.00893 0.91539 1.08682 0.91413 0.92366 0.86132 0.85070 0.86779 0.96317 0.96722 0.92871 0.83479 0.90219 0.95153 0.90312 0.91542 0.91424 0.90353 0.91662 0.89134 0.88013 0.92878 0.84485 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.34 -9.94 10.50 -92.53 -0.97 -10.91 16 3 C 0.11 3.68 6.69 22.50 0.15 3.83 16 4 C -0.17 -6.11 9.99 22.36 0.22 -5.89 16 5 C -0.08 -3.04 8.79 22.26 0.20 -2.85 16 6 C -0.11 -4.15 4.25 -19.85 -0.08 -4.24 16 7 C 0.15 6.11 2.23 44.16 0.10 6.20 16 8 H 0.03 1.30 7.71 -2.39 -0.02 1.29 16 9 C 0.01 0.68 3.77 29.85 0.11 0.79 16 10 C -0.51 -29.33 9.09 25.60 0.23 -29.10 16 11 H 0.04 2.62 6.98 -2.91 -0.02 2.60 16 12 C 0.01 0.53 5.47 84.65 0.46 0.99 16 13 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 14 Si 0.94 45.37 27.56 68.60 1.89 47.26 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.25 -11.42 6.42 99.48 0.64 -10.78 16 18 N -0.68 -22.52 5.66 -495.44 -2.81 -25.33 16 19 C 0.07 2.00 5.15 86.30 0.44 2.44 16 20 C 0.10 2.48 2.89 30.69 0.09 2.57 16 21 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 22 C -0.15 -2.97 5.44 30.75 0.17 -2.80 16 23 C -0.12 -1.86 6.02 30.71 0.18 -1.68 16 24 C -0.15 -2.22 6.14 30.68 0.19 -2.03 16 25 C 0.06 0.97 6.84 72.01 0.49 1.46 16 26 O -0.40 -9.84 10.02 -148.98 -1.49 -11.34 16 27 C -0.07 -2.47 8.98 22.25 0.20 -2.27 16 28 C -0.21 -6.44 9.04 22.37 0.20 -6.23 16 29 H 0.07 1.08 7.66 -2.39 -0.02 1.07 16 30 H 0.06 1.06 7.66 -2.38 -0.02 1.05 16 31 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 33 H 0.11 4.66 7.83 -2.91 -0.02 4.64 16 34 H 0.02 0.91 6.89 -2.38 -0.02 0.89 16 35 H 0.01 0.69 6.99 -2.39 -0.02 0.67 16 36 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.35 10.93 7.64 -89.69 -0.69 10.25 16 38 H 0.08 2.49 7.32 -2.38 -0.02 2.47 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.14 4.42 7.70 -2.91 -0.02 4.40 16 49 H 0.15 3.64 6.30 -2.91 -0.02 3.62 16 Total: -1.00 -69.52 385.52 1.56 -67.96 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.17 Total: 29.80 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 4.47 Total: -37.32 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.51 Total: -85.46 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -2.46 Total: -22.25 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.89 Total: 47.26 kcal Total: -69.52 1.56 -67.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582466236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.767 kcal (2) G-P(sol) polarization free energy of solvation -69.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds