Wall clock time and date at job start Tue Mar 31 2020 13:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47023 * 2 1 4 4 C 1.42905 * 113.99706 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46981 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.00136 * 90.00099 * 5 4 3 7 7 C 1.38244 * 120.00133 * 180.02562 * 6 5 4 8 8 C 1.38232 * 119.99611 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99860 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47064 * 89.99969 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47452 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47197 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46958 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99601 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99691 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00516 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47252 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47262 * 120.00034 * 21 19 17 24 24 H 1.48501 * 109.47152 * 240.00312 * 21 19 17 25 25 C 1.38234 * 120.00312 * 0.25696 * 8 7 6 26 26 C 1.38239 * 119.99901 * 359.49432 * 25 8 7 27 27 H 1.09001 * 109.47370 * 300.00100 * 1 2 3 28 28 H 1.09003 * 109.47135 * 60.00053 * 1 2 3 29 29 H 1.09002 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46936 * 239.99586 * 2 1 3 31 31 H 1.09003 * 109.47135 * 119.99947 * 2 1 3 32 32 H 1.09002 * 109.47108 * 59.99857 * 4 3 2 33 33 H 1.09001 * 109.46934 * 300.00066 * 4 3 2 34 34 H 1.07996 * 120.00251 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.99981 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47152 * 330.00052 * 9 8 7 37 37 H 1.09001 * 109.46980 * 210.00152 * 9 8 7 38 38 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 39 39 H 1.09001 * 109.47380 * 300.00190 * 13 11 10 40 40 H 1.09002 * 109.47060 * 60.00278 * 13 11 10 41 41 H 1.09001 * 109.47289 * 299.99918 * 14 13 11 42 42 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 43 43 H 1.08998 * 109.47061 * 300.00668 * 15 14 13 44 44 H 1.09002 * 109.46668 * 60.00355 * 15 14 13 45 45 H 1.09001 * 109.47142 * 300.00233 * 16 15 14 46 46 H 1.09002 * 109.47097 * 60.00198 * 16 15 14 47 47 H 0.97002 * 120.00201 * 179.97438 * 20 19 17 48 48 H 1.07998 * 120.00015 * 179.72855 * 25 8 7 49 49 H 1.08001 * 119.99843 * 180.23314 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 0.0012 6 6 3.9972 3.5835 1.1985 7 6 4.3532 4.9194 1.1990 8 6 4.5318 5.5874 0.0021 9 6 4.9193 7.0438 0.0026 10 7 6.3797 7.1606 0.0038 11 6 6.9583 8.3778 0.0039 12 8 6.2701 9.3764 0.0035 13 6 8.4605 8.4979 0.0057 14 6 8.8539 9.9764 0.0061 15 6 10.3791 10.0984 0.0086 16 6 10.7724 11.5770 0.0083 17 6 12.2747 11.6972 0.0101 18 1 12.8874 10.8078 0.0109 19 6 12.8666 12.9423 0.0097 20 7 12.1204 14.0253 0.0083 21 14 14.7287 13.0913 0.0112 22 1 15.3337 11.7351 0.0121 23 1 15.1674 13.8276 -1.2014 24 1 15.1653 13.8294 1.2236 25 6 4.3494 4.9212 -1.1953 26 6 3.9985 3.5841 -1.1958 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9764 -0.8892 33 1 3.8332 0.9766 0.8908 34 1 3.8573 3.0617 2.1336 35 1 4.4917 5.4409 2.1345 36 1 4.5155 7.5269 0.8924 37 1 4.5168 7.5271 -0.8876 38 1 6.9300 6.3619 0.0038 39 1 8.8626 8.0151 0.8964 40 1 8.8647 8.0142 -0.8836 41 1 8.4519 10.4596 -0.8844 42 1 8.4497 10.4597 0.8956 43 1 10.7808 9.6153 0.8992 44 1 10.7836 9.6151 -0.8807 45 1 10.3707 12.0597 -0.8826 46 1 10.3678 12.0608 0.8974 47 1 12.5369 14.9013 0.0083 48 1 4.4847 5.4444 -2.1303 49 1 3.8596 3.0627 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588149569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:15 Heat of formation + Delta-G solvation = -93.424953 kcal Electronic energy + Delta-G solvation = -24510.000214 eV Core-core repulsion = 20821.717805 eV Total energy + Delta-G solvation = -3688.282409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24646 -39.42830 -38.26906 -35.37643 -34.74335 -32.89734 -32.55126 -31.37095 -31.29044 -29.78197 -27.84901 -25.68383 -24.35529 -23.30423 -23.17309 -22.23908 -21.20088 -20.26737 -19.93119 -17.39253 -17.12111 -16.78410 -16.53428 -16.20835 -15.91778 -15.91419 -15.41607 -15.25774 -14.43688 -14.31510 -14.21545 -13.88071 -13.63689 -13.59369 -13.37450 -12.86357 -12.82145 -12.59755 -12.55510 -12.05957 -11.90093 -11.77836 -11.66586 -11.57762 -11.40027 -11.36711 -10.97385 -10.50625 -10.46453 -10.38125 -10.15939 -9.89773 -9.58462 -9.33429 -9.26814 -9.16136 -9.09103 -8.92647 -8.28582 -5.93163 -3.95581 0.70391 1.00043 2.75758 2.89806 3.31909 3.34584 3.41748 3.45743 3.65834 4.23920 4.32055 4.43054 4.50469 4.50881 4.58843 4.67842 4.69302 4.82826 4.84897 4.94156 5.05753 5.10205 5.17733 5.32731 5.34623 5.37736 5.41448 5.43153 5.43650 5.59399 5.60219 5.65502 5.89955 5.93923 6.13307 6.17345 6.19246 6.29490 6.34560 6.53186 6.58469 6.65039 6.87587 7.05667 7.23196 7.46008 7.76988 7.93040 8.08593 8.28768 8.50478 9.12455 9.68127 11.18225 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.042140 B = 0.001398 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.285258 B =20025.160075 C =20347.842659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.103 3.897 5 C -0.087 4.087 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.098 4.098 9 C 0.159 3.841 10 N -0.735 5.735 11 C 0.512 3.488 12 O -0.535 6.535 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.519 4.519 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.103 4.103 26 C -0.100 4.100 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.127 0.873 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.056 -31.679 -0.020 38.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.027 3.973 5 C -0.088 4.088 6 C -0.118 4.118 7 C -0.121 4.121 8 C -0.098 4.098 9 C 0.036 3.964 10 N -0.388 5.388 11 C 0.299 3.701 12 O -0.411 6.411 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.121 4.121 26 C -0.118 4.118 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.235 0.765 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.145 0.855 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.676 -30.580 -0.020 38.070 hybrid contribution 1.400 -0.536 0.000 1.499 sum -21.276 -31.116 -0.020 37.694 Atomic orbital electron populations 1.21748 0.93572 1.02312 1.03297 1.22490 0.95778 0.83674 1.00125 1.87991 1.20374 1.26514 1.95426 1.21306 0.81925 0.93088 1.01003 1.19606 1.00564 0.94911 0.93671 1.21042 0.98734 0.94442 0.97548 1.21117 0.98841 0.94339 0.97820 1.19974 1.00779 0.95515 0.93558 1.20162 0.81469 0.91555 1.03263 1.46160 1.06634 1.08814 1.77241 1.21134 0.91511 0.82455 0.74979 1.90712 1.65402 1.36468 1.48507 1.21792 0.90322 1.01686 1.03989 1.21455 0.97827 0.91902 1.02966 1.21652 0.91983 1.01111 1.00056 1.19105 0.95865 0.89504 0.97324 1.21328 0.92189 0.92046 1.50221 0.92709 1.25034 0.98001 0.96018 0.95476 1.69986 1.34843 0.97573 1.51078 0.86569 0.86042 0.78035 0.77537 1.19776 1.21065 1.21058 1.21117 0.98853 0.94333 0.97813 1.21045 0.98749 0.94420 0.97552 0.91780 0.91773 0.91020 0.93325 0.93327 0.92347 0.92356 0.85772 0.85490 0.90643 0.90646 0.76548 0.89147 0.89148 0.91802 0.91805 0.93486 0.93492 0.96582 0.96581 0.93117 0.85491 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.30 16 2 C 0.06 0.29 6.66 37.16 0.25 0.54 16 3 O -0.38 -3.02 10.33 -35.23 -0.36 -3.39 16 4 C 0.10 0.64 6.06 36.00 0.22 0.86 16 5 C -0.09 -0.65 5.51 -104.63 -0.58 -1.23 16 6 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 7 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 8 C -0.10 -0.80 5.25 -104.62 -0.55 -1.35 16 9 C 0.16 1.53 5.80 -5.19 -0.03 1.50 16 10 N -0.73 -7.48 5.55 -61.47 -0.34 -7.82 16 11 C 0.51 7.16 7.83 -10.99 -0.09 7.08 16 12 O -0.54 -9.85 15.98 5.56 0.09 -9.76 16 13 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 14 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 15 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 18 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 21 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 26 C -0.10 -0.73 9.70 -39.58 -0.38 -1.12 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.40 3.11 8.46 -40.82 -0.35 2.76 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 411.94 15.07 6.21 6.21 Total: -1.00 -35.03 411.94 -10.34 -45.37 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -8.75 Total: -3.20 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -2.90 Total: -17.43 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.40 Total: -34.80 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.28 Total: -13.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.03 -10.34 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.058 kcal (2) G-P(sol) polarization free energy of solvation -35.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds