Wall clock time and date at job start Tue Mar 31 2020 13:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47023 * 2 1 4 4 C 1.42905 * 113.99706 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46981 * 180.02562 * 4 3 2 6 6 C 1.38227 * 120.00136 * 90.00099 * 5 4 3 7 7 C 1.38244 * 120.00133 * 180.02562 * 6 5 4 8 8 C 1.38232 * 119.99611 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99860 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47064 * 89.99969 * 9 8 7 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 C 1.52997 * 109.47212 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47452 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47197 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46958 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99601 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99691 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00516 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99744 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47252 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47262 * 120.00034 * 21 19 17 24 24 H 1.48501 * 109.47152 * 240.00312 * 21 19 17 25 25 C 1.38234 * 120.00312 * 0.25696 * 8 7 6 26 26 C 1.38239 * 119.99901 * 359.49432 * 25 8 7 27 27 H 1.09001 * 109.47370 * 300.00100 * 1 2 3 28 28 H 1.09003 * 109.47135 * 60.00053 * 1 2 3 29 29 H 1.09002 * 109.47457 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46936 * 239.99586 * 2 1 3 31 31 H 1.09003 * 109.47135 * 119.99947 * 2 1 3 32 32 H 1.09002 * 109.47108 * 59.99857 * 4 3 2 33 33 H 1.09001 * 109.46934 * 300.00066 * 4 3 2 34 34 H 1.07996 * 120.00251 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.99981 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47152 * 330.00052 * 9 8 7 37 37 H 1.09001 * 109.46980 * 210.00152 * 9 8 7 38 38 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 39 39 H 1.09001 * 109.47380 * 300.00190 * 13 11 10 40 40 H 1.09002 * 109.47060 * 60.00278 * 13 11 10 41 41 H 1.09001 * 109.47289 * 299.99918 * 14 13 11 42 42 H 1.09002 * 109.47153 * 60.00002 * 14 13 11 43 43 H 1.08998 * 109.47061 * 300.00668 * 15 14 13 44 44 H 1.09002 * 109.46668 * 60.00355 * 15 14 13 45 45 H 1.09001 * 109.47142 * 300.00233 * 16 15 14 46 46 H 1.09002 * 109.47097 * 60.00198 * 16 15 14 47 47 H 0.97002 * 120.00201 * 179.97438 * 20 19 17 48 48 H 1.07998 * 120.00015 * 179.72855 * 25 8 7 49 49 H 1.08001 * 119.99843 * 180.23314 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 0.0012 6 6 3.9972 3.5835 1.1985 7 6 4.3532 4.9194 1.1990 8 6 4.5318 5.5874 0.0021 9 6 4.9193 7.0438 0.0026 10 7 6.3797 7.1606 0.0038 11 6 6.9583 8.3778 0.0039 12 8 6.2701 9.3764 0.0035 13 6 8.4605 8.4979 0.0057 14 6 8.8539 9.9764 0.0061 15 6 10.3791 10.0984 0.0086 16 6 10.7724 11.5770 0.0083 17 6 12.2747 11.6972 0.0101 18 1 12.8874 10.8078 0.0109 19 6 12.8666 12.9423 0.0097 20 7 12.1204 14.0253 0.0083 21 14 14.7287 13.0913 0.0112 22 1 15.3337 11.7351 0.0121 23 1 15.1674 13.8276 -1.2014 24 1 15.1653 13.8294 1.2236 25 6 4.3494 4.9212 -1.1953 26 6 3.9985 3.5841 -1.1958 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8340 0.9764 -0.8892 33 1 3.8332 0.9766 0.8908 34 1 3.8573 3.0617 2.1336 35 1 4.4917 5.4409 2.1345 36 1 4.5155 7.5269 0.8924 37 1 4.5168 7.5271 -0.8876 38 1 6.9300 6.3619 0.0038 39 1 8.8626 8.0151 0.8964 40 1 8.8647 8.0142 -0.8836 41 1 8.4519 10.4596 -0.8844 42 1 8.4497 10.4597 0.8956 43 1 10.7808 9.6153 0.8992 44 1 10.7836 9.6151 -0.8807 45 1 10.3707 12.0597 -0.8826 46 1 10.3678 12.0608 0.8974 47 1 12.5369 14.9013 0.0083 48 1 4.4847 5.4444 -2.1303 49 1 3.8596 3.0627 -2.1313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588149569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:14 Heat of formation + Delta-G solvation = -114.441007 kcal Electronic energy + Delta-G solvation = -24510.911538 eV Core-core repulsion = 20821.717805 eV Total energy + Delta-G solvation = -3689.193733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02811 -40.30865 -38.77623 -36.71966 -36.03133 -34.59943 -33.48207 -31.93331 -31.92135 -31.30315 -28.75161 -27.23681 -25.28540 -23.86217 -23.72553 -23.66555 -21.83541 -21.77970 -21.25490 -18.42122 -18.20511 -17.66759 -17.30399 -17.28942 -16.90589 -16.78933 -16.47455 -16.20648 -15.90976 -15.49955 -14.94702 -14.63184 -14.53721 -14.39524 -14.29558 -13.89309 -13.87868 -13.56620 -13.37618 -13.30874 -13.14982 -13.13106 -12.83015 -12.32266 -12.30814 -12.21390 -12.13605 -12.12024 -11.92273 -11.90914 -11.36430 -11.35111 -11.15545 -10.83999 -10.58144 -10.54832 -10.13743 -9.88066 -9.74907 -8.17911 -6.30095 0.11659 0.44274 1.41079 1.41969 1.55469 1.66104 2.18029 2.42708 2.64645 3.12873 3.15030 3.60945 3.80287 3.88173 3.93794 4.07073 4.09391 4.10512 4.17123 4.19575 4.32419 4.41923 4.50606 4.50878 4.55031 4.60634 4.70488 4.74817 4.75558 4.86489 4.86675 4.90294 4.97241 5.03007 5.11185 5.21157 5.26468 5.34567 5.34724 5.37664 5.43896 5.58148 5.58794 5.60371 5.79532 5.89300 5.97934 6.24710 6.26460 6.55591 6.88682 7.27164 7.39756 8.94606 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.042140 B = 0.001398 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.285258 B =20025.160075 C =20347.842659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.101 3.899 5 C -0.094 4.094 6 C -0.106 4.106 7 C -0.107 4.107 8 C -0.103 4.103 9 C 0.162 3.838 10 N -0.714 5.714 11 C 0.512 3.488 12 O -0.588 6.588 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.541 4.541 18 H 0.066 0.934 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.969 3.031 22 H -0.257 1.257 23 H -0.279 1.279 24 H -0.279 1.279 25 C -0.107 4.107 26 C -0.106 4.106 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.416 0.584 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.061 0.939 45 H -0.016 1.016 46 H -0.016 1.016 47 H 0.263 0.737 48 H 0.134 0.866 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.918 -34.793 -0.018 40.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.330 6.330 4 C 0.025 3.975 5 C -0.094 4.094 6 C -0.124 4.124 7 C -0.126 4.126 8 C -0.104 4.104 9 C 0.039 3.961 10 N -0.367 5.367 11 C 0.300 3.700 12 O -0.468 6.468 13 C -0.167 4.167 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.084 0.916 19 C -0.203 4.203 20 N -0.579 5.579 21 Si 0.793 3.207 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.126 4.126 26 C -0.124 4.124 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.253 0.747 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.071 0.929 48 H 0.152 0.848 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.537 -33.768 -0.018 40.052 hybrid contribution 0.962 0.396 -0.001 1.040 sum -20.575 -33.372 -0.019 39.205 Atomic orbital electron populations 1.21777 0.93399 1.03278 1.02480 1.22659 0.96001 0.82784 1.01150 1.87951 1.21237 1.28141 1.95642 1.21396 0.81416 0.92412 1.02247 1.19875 1.00058 0.95768 0.93731 1.21251 0.98467 0.94369 0.98273 1.21244 0.98742 0.94660 0.97929 1.19822 1.01910 0.94495 0.94150 1.20121 0.80828 0.92683 1.02518 1.45966 1.07195 1.08248 1.75262 1.21211 0.91645 0.82716 0.74418 1.90703 1.66424 1.38390 1.51310 1.21670 0.90103 0.98199 1.06720 1.21252 0.95744 0.95431 1.01048 1.21453 0.93818 0.96744 1.01333 1.19068 0.95214 0.93334 0.94316 1.21792 0.93280 0.92720 1.50128 0.91567 1.26073 1.03865 0.95563 0.94760 1.70139 1.37448 0.98309 1.51987 0.85346 0.78951 0.78737 0.77676 1.18053 1.20488 1.20475 1.21244 0.98755 0.94658 0.97922 1.21254 0.98480 0.94345 0.98277 0.92580 0.92573 0.89190 0.92266 0.92267 0.91103 0.91114 0.84418 0.84801 0.91439 0.91441 0.74703 0.86335 0.86333 0.93861 0.93863 0.92048 0.92060 0.99717 0.99713 0.92869 0.84802 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 71.98 0.74 -0.45 16 2 C 0.05 0.44 6.66 71.98 0.48 0.92 16 3 O -0.41 -5.90 10.33 -148.98 -1.54 -7.44 16 4 C 0.10 1.07 6.06 71.24 0.43 1.50 16 5 C -0.09 -1.25 5.51 -19.87 -0.11 -1.36 16 6 C -0.11 -1.39 9.70 22.27 0.22 -1.17 16 7 C -0.11 -1.51 9.70 22.27 0.22 -1.30 16 8 C -0.10 -1.58 5.25 -19.87 -0.10 -1.68 16 9 C 0.16 3.04 5.80 85.63 0.50 3.54 16 10 N -0.71 -13.48 5.55 -466.78 -2.59 -16.07 16 11 C 0.51 13.90 7.83 87.66 0.69 14.59 16 12 O -0.59 -22.13 15.98 -3.03 -0.05 -22.18 16 13 C -0.13 -3.15 5.70 29.85 0.17 -2.98 16 14 C -0.10 -3.52 4.50 30.60 0.14 -3.39 16 15 C -0.10 -3.95 5.15 30.60 0.16 -3.79 16 16 C 0.02 0.99 4.97 29.85 0.15 1.14 16 17 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.33 5.46 84.65 0.46 0.14 16 20 N -0.94 -59.41 13.29 21.44 0.28 -59.13 16 21 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 22 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 25 C -0.11 -1.51 9.70 22.27 0.22 -1.30 16 26 C -0.11 -1.39 9.70 22.27 0.22 -1.17 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 33 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 34 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 37 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 38 H 0.42 5.38 8.46 -92.71 -0.78 4.59 16 39 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 42 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 45 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 46 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 47 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -77.89 411.94 3.05 -74.84 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.12 Total: 11.11 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.79 Total: -28.16 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.30 Total: -75.19 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.59 Total: -29.62 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.89 3.05 -74.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588149569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.598 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds