Wall clock time and date at job start Tue Mar 31 2020 13:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.02719 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46642 * 264.97496 * 10 9 8 12 12 N 1.46498 * 109.46819 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00011 * 179.97438 * 12 11 10 14 14 O 1.21289 * 119.99880 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00205 * 179.97438 * 13 12 11 16 16 C 1.52999 * 109.47296 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47498 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.47335 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47161 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99782 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00299 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99790 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47089 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47005 * 120.00227 * 23 21 19 26 26 H 1.48501 * 109.47228 * 240.00029 * 23 21 19 27 27 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 28 28 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 29 29 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 31 31 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 32 32 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 33 33 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 34 34 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 36 36 H 1.08995 * 109.47201 * 24.97270 * 10 9 8 37 37 H 1.08994 * 109.47190 * 144.97674 * 10 9 8 38 38 H 1.09002 * 109.46871 * 300.00084 * 11 10 9 39 39 H 1.08994 * 109.47183 * 60.00173 * 11 10 9 40 40 H 0.96996 * 120.00280 * 359.97438 * 12 11 10 41 41 H 1.09002 * 109.47528 * 300.00269 * 15 13 12 42 42 H 1.09002 * 109.47464 * 60.00673 * 15 13 12 43 43 H 1.08999 * 109.47759 * 300.00461 * 16 15 13 44 44 H 1.09008 * 109.46873 * 60.00371 * 16 15 13 45 45 H 1.08999 * 109.47031 * 300.00955 * 17 16 15 46 46 H 1.09000 * 109.46602 * 60.00046 * 17 16 15 47 47 H 1.09000 * 109.47125 * 299.99654 * 18 17 16 48 48 H 1.08994 * 109.47095 * 60.00394 * 18 17 16 49 49 H 0.96996 * 120.00052 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0028 11 6 2.5581 4.3330 1.4338 12 7 1.6668 5.4957 1.4321 13 6 1.1752 5.9697 2.5940 14 8 1.4711 5.4338 3.6412 15 6 0.2589 7.1660 2.5924 16 6 -0.1518 7.4959 4.0289 17 6 -1.0816 8.7109 4.0273 18 6 -1.4918 9.0411 5.4638 19 6 -2.4081 10.2375 5.4622 20 1 -2.6712 10.7149 4.5298 21 6 -2.9106 10.7227 6.6509 22 7 -2.5898 10.1417 7.7863 23 14 -4.0459 12.2061 6.6489 24 1 -4.2493 12.6719 5.2536 25 1 -5.3548 11.8285 7.2400 26 1 -3.4365 13.2969 7.4515 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7886 -0.5727 0.0009 33 1 6.2280 -0.2459 0.0051 34 1 7.1668 2.0295 0.0005 35 1 5.6692 3.9825 -0.0010 36 1 3.4874 4.8574 -0.4376 37 1 2.0798 3.7792 -0.5924 38 1 2.0393 3.4786 1.8686 39 1 3.4470 4.5570 2.0234 40 1 1.4305 5.9245 0.5947 41 1 0.7778 8.0205 2.1580 42 1 -0.6299 6.9422 2.0024 43 1 -0.6705 6.6415 4.4638 44 1 0.7372 7.7199 4.6186 45 1 -0.5625 9.5651 3.5925 46 1 -1.9705 8.4873 3.4375 47 1 -2.0109 8.1871 5.8989 48 1 -0.6027 9.2649 6.0532 49 1 -2.9430 10.4832 8.6226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588155935.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:06 Heat of formation + Delta-G solvation = -88.950925 kcal Electronic energy + Delta-G solvation = -25291.497476 eV Core-core repulsion = 21603.409076 eV Total energy + Delta-G solvation = -3688.088400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71204 -39.52991 -37.96959 -35.71415 -34.75608 -33.09147 -32.54865 -32.05330 -30.29190 -29.77230 -28.34821 -25.65157 -24.51414 -23.76323 -22.15027 -21.97532 -21.39249 -20.14799 -19.89105 -18.49093 -16.74858 -16.59603 -16.54286 -16.21228 -16.09418 -15.73107 -15.62982 -14.86998 -14.62916 -14.41692 -13.94480 -13.90850 -13.57431 -13.44177 -13.34396 -12.99982 -12.58983 -12.55978 -12.24356 -12.12719 -12.01158 -11.92881 -11.63130 -11.53799 -11.38081 -11.16072 -11.14399 -10.95944 -10.47969 -10.45244 -10.35755 -9.73652 -9.56288 -9.26813 -9.16194 -9.05718 -8.92711 -8.51485 -8.27452 -5.92060 -3.94360 0.90345 1.05958 2.78855 2.83720 3.17808 3.35344 3.40782 3.42407 3.46549 4.34219 4.36901 4.48626 4.51721 4.57870 4.67234 4.77850 4.79008 4.83298 4.89336 5.05911 5.08261 5.13405 5.25305 5.37760 5.39253 5.40817 5.42758 5.44989 5.59203 5.64237 5.70887 5.84031 5.93862 5.98314 6.07610 6.15962 6.20554 6.36845 6.39839 6.42498 6.61371 6.90228 7.02360 7.08419 7.25294 7.54054 7.78432 7.94764 8.09979 8.37324 8.51813 9.13714 9.69110 11.19321 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.001718 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.256272 B =16297.630712 C =16961.145449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.311 6.311 4 C 0.137 3.863 5 C -0.209 4.209 6 C -0.082 4.082 7 C -0.157 4.157 8 C -0.075 4.075 9 C -0.114 4.114 10 C -0.081 4.081 11 C 0.127 3.873 12 N -0.739 5.739 13 C 0.511 3.489 14 O -0.536 6.536 15 C -0.138 4.138 16 C -0.103 4.103 17 C -0.110 4.110 18 C 0.019 3.981 19 C -0.519 4.519 20 H 0.055 0.945 21 C 0.054 3.946 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.613 -22.405 -23.067 35.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.224 6.224 4 C 0.091 3.909 5 C -0.228 4.228 6 C -0.100 4.100 7 C -0.175 4.175 8 C -0.093 4.093 9 C -0.115 4.115 10 C -0.119 4.119 11 C 0.003 3.997 12 N -0.392 5.392 13 C 0.298 3.702 14 O -0.412 6.412 15 C -0.178 4.178 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.018 4.018 19 C -0.557 4.557 20 H 0.073 0.927 21 C -0.147 4.147 22 N -0.535 5.535 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.627 -22.653 -22.100 35.295 hybrid contribution -0.563 0.620 -0.331 0.901 sum 15.064 -22.032 -22.431 34.864 Atomic orbital electron populations 1.21785 0.92481 1.02957 1.03834 1.22804 0.96119 0.81830 1.01275 1.86102 1.18711 1.29341 1.88268 1.18823 0.82523 0.93533 0.96014 1.21239 0.94459 0.97987 1.09100 1.20955 0.94301 0.97418 0.97359 1.21059 0.99960 0.92424 1.04077 1.20949 0.91647 0.99399 0.97349 1.19030 0.93978 0.91877 1.06608 1.20587 0.99055 0.95352 0.96894 1.21229 0.93876 0.88613 0.95947 1.46091 1.50710 1.32875 1.09535 1.21089 0.80620 0.85376 0.83100 1.90707 1.59236 1.59868 1.31418 1.21788 0.98753 0.95382 1.01915 1.21448 1.00440 0.99596 0.92653 1.21650 0.97035 0.94943 1.01160 1.19106 0.96304 0.96345 0.90075 1.21332 1.28287 1.13455 0.92639 0.92696 1.25052 0.96721 0.97153 0.95737 1.69989 1.45018 1.40874 0.97599 0.86554 0.80655 0.82904 0.77974 1.19791 1.21082 1.21072 0.91214 0.91469 0.90321 0.92132 0.91985 0.85521 0.85845 0.85798 0.85208 0.90405 0.89936 0.91432 0.91734 0.76732 0.89189 0.89193 0.91847 0.91841 0.93493 0.93496 0.96582 0.96574 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.35 5.46 37.16 0.20 0.56 16 3 O -0.31 -2.88 9.27 -19.42 -0.18 -3.06 16 4 C 0.14 1.25 6.66 -39.22 -0.26 0.99 16 5 C -0.21 -1.63 9.04 -39.43 -0.36 -1.98 16 6 C -0.08 -0.58 10.04 -39.60 -0.40 -0.97 16 7 C -0.16 -1.11 10.04 -39.56 -0.40 -1.51 16 8 C -0.08 -0.58 9.68 -39.61 -0.38 -0.96 16 9 C -0.11 -1.00 5.15 -104.47 -0.54 -1.54 16 10 C -0.08 -0.65 5.18 -27.88 -0.14 -0.80 16 11 C 0.13 1.37 5.66 -4.04 -0.02 1.34 16 12 N -0.74 -8.01 5.56 -60.29 -0.33 -8.35 16 13 C 0.51 7.57 7.83 -10.99 -0.09 7.48 16 14 O -0.54 -10.41 15.98 5.55 0.09 -10.32 16 15 C -0.14 -1.92 5.70 -27.89 -0.16 -2.08 16 16 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 17 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 18 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 19 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 20 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 21 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -27.87 13.29 55.43 0.74 -27.13 16 23 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 32 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 33 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.08 0.49 8.05 -51.93 -0.42 0.08 16 37 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 3.03 8.47 -40.82 -0.35 2.69 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 44 H 0.06 1.26 8.10 -51.92 -0.42 0.84 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 406.69 15.07 6.13 6.13 Total: -1.00 -35.74 406.69 -10.14 -45.88 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.59 Total: -2.20 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.97 Total: -18.09 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.40 Total: -35.48 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.09 Total: -13.38 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.74 -10.14 -45.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155935.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.068 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds