Wall clock time and date at job start Tue Mar 31 2020 13:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00346 * 2 1 4 4 C 1.52995 * 109.46748 * 90.00431 * 3 2 1 5 5 C 1.53001 * 109.47181 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47386 * 180.02562 * 5 4 3 7 7 C 1.35898 * 116.99694 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.05254 * 179.97438 * 7 6 5 9 9 C 1.38144 * 119.94607 * 179.97438 * 8 7 6 10 10 C 1.38266 * 120.05233 * 0.02562 * 9 8 7 11 11 C 1.38269 * 120.11595 * 359.95530 * 10 9 8 12 12 C 1.38142 * 120.04935 * 0.04230 * 11 10 9 13 13 C 1.34778 * 120.00254 * 180.02562 * 2 1 3 14 14 O 1.21278 * 120.00482 * 179.97438 * 13 2 1 15 15 C 1.50703 * 119.99433 * 359.97438 * 13 2 1 16 16 C 1.53004 * 109.47065 * 180.02562 * 15 13 2 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47026 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46876 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99987 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00022 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99825 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00282 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46933 * 60.00204 * 23 21 19 25 25 H 1.48497 * 109.47353 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47362 * 300.00377 * 23 21 19 27 27 H 1.08994 * 109.47567 * 89.99102 * 1 2 3 28 28 H 1.08996 * 109.47214 * 209.99887 * 1 2 3 29 29 H 1.09006 * 109.46756 * 329.99350 * 1 2 3 30 30 H 1.08999 * 109.46978 * 330.00445 * 3 2 1 31 31 H 1.08993 * 109.47175 * 210.00363 * 3 2 1 32 32 H 1.08999 * 109.47370 * 60.00254 * 4 3 2 33 33 H 1.09006 * 109.47017 * 300.00096 * 4 3 2 34 34 H 1.08999 * 109.46920 * 59.99785 * 5 4 3 35 35 H 1.08998 * 109.47220 * 300.00155 * 5 4 3 36 36 H 1.08002 * 120.02704 * 359.70561 * 8 7 6 37 37 H 1.08001 * 119.97447 * 179.97438 * 9 8 7 38 38 H 1.08000 * 119.94089 * 179.97438 * 10 9 8 39 39 H 1.07992 * 119.97577 * 180.02562 * 11 10 9 40 40 H 1.08005 * 120.02748 * 179.97438 * 12 11 10 41 41 H 1.09008 * 109.47081 * 299.99989 * 15 13 2 42 42 H 1.08994 * 109.47306 * 60.00240 * 15 13 2 43 43 H 1.09002 * 109.46910 * 300.00196 * 16 15 13 44 44 H 1.08994 * 109.47154 * 59.99790 * 16 15 13 45 45 H 1.08995 * 109.47221 * 300.00202 * 17 16 15 46 46 H 1.09003 * 109.47017 * 60.00263 * 17 16 15 47 47 H 1.08991 * 109.47271 * 300.00263 * 18 17 16 48 48 H 1.09003 * 109.46581 * 60.00518 * 18 17 16 49 49 H 0.96998 * 120.00388 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7102 1.4425 5 6 3.2172 3.0355 1.4426 6 8 3.4560 3.4477 2.7899 7 6 4.1288 4.6149 2.9679 8 6 4.3947 5.0751 4.2494 9 6 5.0792 6.2617 4.4279 10 6 5.4990 6.9907 3.3305 11 6 5.2356 6.5340 2.0523 12 6 4.5514 5.3480 1.8687 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3854 -2.4723 -0.0005 16 6 2.3796 -3.6353 -0.0005 17 6 1.6145 -4.9602 0.0001 18 6 2.6088 -6.1232 -0.0005 19 6 1.8552 -7.4282 0.0007 20 1 0.7752 -7.4282 0.0015 21 6 2.5445 -8.6223 0.0010 22 7 3.8597 -8.6224 0.0006 23 14 1.6106 -10.2400 0.0033 24 1 0.7555 -10.3196 -1.2084 25 1 2.5755 -11.3688 0.0025 26 1 0.7580 -10.3177 1.2167 27 1 -0.3634 0.0002 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6085 2.0284 -0.5138 31 1 3.1499 1.1384 -0.5139 32 1 3.0418 0.9506 1.9562 33 1 1.5002 1.8406 1.9564 34 1 2.6278 3.7950 0.9290 35 1 4.1696 2.9057 0.9286 36 1 4.0628 4.5084 5.1069 37 1 5.2861 6.6206 5.4253 38 1 6.0337 7.9183 3.4721 39 1 5.5649 7.1050 1.1968 40 1 4.3456 4.9919 0.8700 41 1 0.7590 -2.5302 0.8898 42 1 0.7584 -2.5298 -0.8902 43 1 3.0062 -3.5775 -0.8905 44 1 3.0062 -3.5775 0.8894 45 1 0.9882 -5.0177 0.8903 46 1 0.9876 -5.0182 -0.8897 47 1 3.2348 -6.0655 -0.8909 48 1 3.2360 -6.0654 0.8891 49 1 4.3447 -9.4624 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588282538.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:06 Heat of formation + Delta-G solvation = -95.195135 kcal Electronic energy + Delta-G solvation = -25008.014788 eV Core-core repulsion = 21319.655619 eV Total energy + Delta-G solvation = -3688.359169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18502 -40.90508 -38.50324 -37.13119 -36.53897 -34.69531 -33.84099 -31.95118 -31.46393 -30.62472 -28.19108 -27.75083 -26.33937 -24.42170 -23.60021 -23.03356 -22.24588 -21.71856 -20.09422 -19.20293 -18.43101 -18.00473 -17.44765 -17.11545 -17.04645 -16.78592 -16.59922 -16.42363 -15.82441 -15.31293 -15.06447 -14.72017 -14.49886 -14.36653 -14.30303 -14.15993 -13.63592 -13.57757 -13.46514 -13.37752 -13.28782 -12.99481 -12.77541 -12.61438 -12.47467 -12.38090 -12.25653 -12.14552 -12.11459 -11.72691 -11.62858 -11.38143 -11.34031 -11.15418 -10.74129 -10.54231 -9.97047 -9.72721 -9.19686 -8.18224 -6.30811 0.37558 0.47342 1.40527 1.44735 1.52604 1.58707 1.89028 2.31893 2.42473 2.83265 3.14302 3.59906 3.80356 3.83840 3.93482 4.01725 4.04375 4.08997 4.12428 4.23533 4.28423 4.30710 4.38599 4.47176 4.51842 4.58029 4.62893 4.65119 4.72816 4.79239 4.82241 4.85533 4.95786 5.01386 5.07193 5.09084 5.18436 5.32459 5.35058 5.36596 5.46861 5.55189 5.57780 5.59064 5.77607 5.85589 5.87714 6.25136 6.33652 6.43091 6.87363 7.17313 7.38857 8.93775 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.001567 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.423546 B =17861.477785 C =18485.275375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.617 5.617 3 C 0.119 3.881 4 C -0.125 4.125 5 C 0.065 3.935 6 O -0.337 6.337 7 C 0.107 3.893 8 C -0.175 4.175 9 C -0.085 4.085 10 C -0.165 4.165 11 C -0.087 4.087 12 C -0.220 4.220 13 C 0.506 3.494 14 O -0.587 6.587 15 C -0.126 4.126 16 C -0.096 4.096 17 C -0.095 4.095 18 C 0.018 3.982 19 C -0.544 4.544 20 H 0.067 0.933 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.285 1.285 26 H -0.264 1.264 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.061 0.939 46 H 0.062 0.938 47 H -0.016 1.016 48 H -0.017 1.017 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 35.517 3.103 36.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.349 5.349 3 C -0.004 4.004 4 C -0.164 4.164 5 C -0.010 4.010 6 O -0.251 6.251 7 C 0.062 3.938 8 C -0.194 4.194 9 C -0.103 4.103 10 C -0.183 4.183 11 C -0.105 4.105 12 C -0.238 4.238 13 C 0.296 3.704 14 O -0.467 6.467 15 C -0.166 4.166 16 C -0.134 4.134 17 C -0.132 4.132 18 C -0.019 4.019 19 C -0.582 4.582 20 H 0.085 0.915 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.794 3.206 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.003 0.997 48 H 0.001 0.999 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.386 35.278 3.227 35.997 hybrid contribution 0.387 -1.195 -0.065 1.257 sum -5.999 34.084 3.162 34.752 Atomic orbital electron populations 1.22154 0.76486 1.05060 1.03654 1.47978 1.08775 1.05018 1.73153 1.21337 0.98293 0.85525 0.95245 1.21791 1.01141 0.95035 0.98457 1.22772 1.00401 0.96693 0.81182 1.86029 1.71512 1.36911 1.30656 1.19339 0.93454 0.85901 0.95116 1.20732 1.04599 0.99142 0.94906 1.21309 0.95380 0.92947 1.00618 1.21454 1.02763 1.01775 0.92332 1.21333 0.95802 0.94796 0.98547 1.21526 1.05458 0.98441 0.98408 1.21285 0.87643 0.86854 0.74622 1.90687 1.16462 1.88121 1.51439 1.21701 0.98905 0.89577 1.06370 1.21255 0.97526 0.93817 1.00852 1.21444 0.97802 0.92646 1.01355 1.19058 0.94708 0.93869 0.94257 1.21736 0.93784 0.92207 1.50453 0.91484 1.26101 0.95776 1.03756 0.94716 1.70131 1.08102 1.27801 1.51768 0.85425 0.78161 0.77631 0.79361 1.18838 1.21087 1.18914 0.90669 0.89779 0.88822 0.86467 0.91597 0.93764 0.89584 0.89280 0.91975 0.85275 0.83180 0.83543 0.83524 0.84241 0.86550 0.86362 0.93928 0.94179 0.92073 0.91926 0.99724 0.99854 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.24 127.77 1.31 1.95 16 2 N -0.62 -11.45 2.87 -846.76 -2.43 -13.88 16 3 C 0.12 1.90 5.41 86.38 0.47 2.36 16 4 C -0.13 -2.17 5.91 30.59 0.18 -1.99 16 5 C 0.06 1.02 4.74 71.98 0.34 1.36 16 6 O -0.34 -7.23 10.14 -92.40 -0.94 -8.17 16 7 C 0.11 2.11 6.69 22.51 0.15 2.26 16 8 C -0.18 -3.14 9.99 22.37 0.22 -2.92 16 9 C -0.08 -1.14 10.04 22.25 0.22 -0.92 16 10 C -0.17 -1.99 10.04 22.28 0.22 -1.76 16 11 C -0.09 -1.11 10.04 22.25 0.22 -0.89 16 12 C -0.22 -3.48 9.04 22.36 0.20 -3.28 16 13 C 0.51 14.10 7.67 87.66 0.67 14.77 16 14 O -0.59 -22.38 15.56 -3.02 -0.05 -22.43 16 15 C -0.13 -3.20 4.25 29.85 0.13 -3.07 16 16 C -0.10 -3.58 4.50 30.59 0.14 -3.44 16 17 C -0.09 -3.94 5.15 30.59 0.16 -3.78 16 18 C 0.02 1.02 4.97 29.85 0.15 1.16 16 19 C -0.54 -31.85 9.11 25.60 0.23 -31.61 16 20 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 21 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 22 N -0.94 -59.55 13.29 21.45 0.28 -59.27 16 23 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 24 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 26 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.08 0.73 6.44 -2.39 -0.02 0.72 16 29 H 0.09 0.49 8.07 -2.38 -0.02 0.48 16 30 H 0.12 0.96 8.07 -2.39 -0.02 0.94 16 31 H 0.07 1.36 7.42 -2.39 -0.02 1.35 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.09 0.92 7.66 -2.39 -0.02 0.90 16 35 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 36 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.14 1.72 6.30 -2.91 -0.02 1.70 16 41 H 0.12 2.38 7.40 -2.38 -0.02 2.36 16 42 H 0.12 2.37 8.11 -2.39 -0.02 2.35 16 43 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 44 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 48 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -81.26 404.59 5.27 -75.98 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.90 Total: 10.41 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 5.48 Total: -29.70 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -2.15 Total: -73.15 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.98 Total: -30.60 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -81.26 5.27 -75.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588282538.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.212 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds