Wall clock time and date at job start Tue Mar 31 2020 13:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00043 * 2 1 4 4 C 1.38747 * 120.05571 * 0.03028 * 3 2 1 5 5 C 1.38118 * 119.94437 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05708 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10813 * 359.74761 * 6 5 4 8 8 C 1.38164 * 120.05905 * 0.50967 * 7 6 5 9 9 C 1.50695 * 120.03016 * 179.76793 * 8 7 6 10 10 H 1.09001 * 109.45959 * 144.72396 * 9 8 7 11 11 C 1.53037 * 109.46261 * 264.70082 * 9 8 7 12 12 C 1.53122 * 109.27664 * 179.18520 * 11 9 8 13 13 C 1.53124 * 109.15921 * 302.34520 * 12 11 9 14 14 C 1.53036 * 109.27749 * 57.65837 * 13 12 11 15 15 N 1.46842 * 109.45444 * 24.75208 * 9 8 7 16 16 C 1.46904 * 111.00213 * 54.14639 * 15 9 8 17 17 C 1.53005 * 109.47206 * 176.12214 * 16 15 9 18 18 O 1.42899 * 109.47056 * 62.26391 * 17 16 15 19 19 C 1.42896 * 114.00269 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47694 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99841 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00409 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99934 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47271 * 120.00211 * 24 22 20 27 27 H 1.48500 * 109.47358 * 240.00609 * 24 22 20 28 28 H 1.09002 * 109.46915 * 299.99330 * 1 2 3 29 29 H 1.08995 * 109.47038 * 59.99922 * 1 2 3 30 30 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.02753 * 359.94431 * 4 3 2 32 32 H 1.08010 * 119.97433 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.94463 * 180.02562 * 6 5 4 34 34 H 1.08005 * 119.97219 * 180.25459 * 7 6 5 35 35 H 1.08997 * 109.50263 * 299.12491 * 11 9 8 36 36 H 1.08996 * 109.50268 * 59.24405 * 11 9 8 37 37 H 1.08996 * 109.52326 * 62.25075 * 12 11 9 38 38 H 1.09001 * 109.52249 * 182.38023 * 12 11 9 39 39 H 1.09002 * 109.49626 * 177.59575 * 13 12 11 40 40 H 1.09002 * 109.50419 * 297.71373 * 13 12 11 41 41 H 1.08999 * 109.46470 * 60.83193 * 14 13 12 42 42 H 1.09000 * 109.46143 * 180.80630 * 14 13 12 43 43 H 1.08997 * 109.47233 * 296.12334 * 16 15 9 44 44 H 1.08999 * 109.47038 * 56.12149 * 16 15 9 45 45 H 1.09000 * 109.46898 * 182.26827 * 17 16 15 46 46 H 1.09004 * 109.47108 * 302.26682 * 17 16 15 47 47 H 1.09002 * 109.47050 * 300.00565 * 19 18 17 48 48 H 1.09005 * 109.47075 * 60.00288 * 19 18 17 49 49 H 0.96993 * 120.00257 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6047 0.0012 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0068 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0012 10 1 3.7464 -0.7417 0.5906 11 6 4.4267 -0.4742 -1.4360 12 6 5.2800 -1.7456 -1.4326 13 6 6.6287 -1.4439 -0.7733 14 6 6.3919 -0.9195 0.6448 15 7 5.5717 0.2972 0.5874 16 6 5.4395 0.9061 1.9178 17 6 6.8275 1.0886 2.5353 18 8 7.5955 1.9812 1.7257 19 6 8.9156 2.2216 2.2170 20 6 9.6310 3.1715 1.2913 21 1 9.1277 3.5538 0.4156 22 6 10.9276 3.5533 1.5630 23 7 11.5404 3.0882 2.6297 24 14 11.8146 4.7303 0.4152 25 1 10.9128 5.1042 -0.7039 26 1 12.2059 5.9515 1.1641 27 1 13.0300 4.0714 -0.1270 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2128 2.3203 0.0002 32 1 1.3340 4.5114 0.0012 33 1 3.7923 4.6381 0.0024 34 1 5.1345 2.5751 0.0113 35 1 3.4492 -0.6932 -1.8655 36 1 4.9216 0.2946 -2.0294 37 1 4.7671 -2.5270 -0.8718 38 1 5.4411 -2.0790 -2.4578 39 1 7.2243 -2.3558 -0.7294 40 1 7.1583 -0.6904 -1.3563 41 1 5.8745 -1.6789 1.2311 42 1 7.3497 -0.6902 1.1119 43 1 4.9521 1.8767 1.8263 44 1 4.8401 0.2573 2.5564 45 1 6.7271 1.5032 3.5385 46 1 7.3307 0.1233 2.5898 47 1 8.8582 2.6598 3.2134 48 1 9.4624 1.2798 2.2652 49 1 12.4527 3.3566 2.8206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590160098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:37 Heat of formation + Delta-G solvation = -54.762020 kcal Electronic energy + Delta-G solvation = -27965.962593 eV Core-core repulsion = 24279.356735 eV Total energy + Delta-G solvation = -3686.605858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59625 -38.92300 -37.21718 -36.50022 -33.66368 -32.72801 -32.35498 -30.08119 -29.09698 -28.71196 -27.33258 -26.69873 -24.29731 -23.51123 -22.25015 -22.00758 -21.08908 -20.79238 -19.35547 -18.06046 -16.41647 -16.33868 -16.30416 -15.86759 -15.53702 -15.22988 -14.75028 -14.45484 -14.26695 -14.17712 -14.03180 -13.98623 -13.56898 -13.35888 -12.91023 -12.79739 -12.57039 -12.30457 -12.15279 -12.02250 -11.70299 -11.45729 -11.24502 -11.06573 -11.05080 -10.94289 -10.75303 -10.71996 -10.61109 -10.53599 -10.17412 -10.07983 -9.77335 -9.01444 -8.75441 -8.64420 -8.14344 -8.08277 -7.92834 -6.05505 -4.06125 1.37833 1.49915 3.18086 3.32807 3.39307 3.46208 3.80267 4.05109 4.40310 4.64968 4.78969 4.89602 4.92234 4.95195 5.01755 5.09450 5.12849 5.22550 5.26869 5.31237 5.41203 5.42646 5.48136 5.54414 5.63258 5.70653 5.74223 5.85916 5.89168 5.92053 6.04763 6.06752 6.13655 6.15522 6.16485 6.30427 6.33783 6.40227 6.44605 6.50877 6.58474 6.70464 6.91954 7.17180 7.32377 7.42233 7.46303 7.49986 7.86838 8.22996 8.67810 9.09141 9.58705 11.06251 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.003486 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.379441 B = 8030.091305 C = 8938.861165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.125 3.875 4 C -0.216 4.216 5 C -0.086 4.086 6 C -0.158 4.158 7 C -0.054 4.054 8 C -0.111 4.111 9 C 0.137 3.863 10 H 0.047 0.953 11 C -0.102 4.102 12 C -0.118 4.118 13 C -0.117 4.117 14 C 0.055 3.945 15 N -0.516 5.516 16 C 0.053 3.947 17 C 0.062 3.938 18 O -0.378 6.378 19 C 0.194 3.806 20 C -0.507 4.507 21 H 0.067 0.933 22 C 0.055 3.945 23 N -0.901 5.901 24 Si 0.905 3.095 25 H -0.270 1.270 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.034 0.966 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.042 -7.643 -5.456 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.235 4.235 5 C -0.104 4.104 6 C -0.177 4.177 7 C -0.072 4.072 8 C -0.112 4.112 9 C 0.029 3.971 10 H 0.065 0.935 11 C -0.140 4.140 12 C -0.156 4.156 13 C -0.154 4.154 14 C -0.072 4.072 15 N -0.241 5.241 16 C -0.074 4.074 17 C -0.016 4.016 18 O -0.297 6.297 19 C 0.120 3.880 20 C -0.545 4.545 21 H 0.086 0.914 22 C -0.146 4.146 23 N -0.540 5.540 24 Si 0.733 3.267 25 H -0.194 1.194 26 H -0.210 1.210 27 H -0.209 1.209 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.173 0.827 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.617 -7.414 -5.832 23.586 hybrid contribution -0.073 0.092 0.450 0.465 sum -21.690 -7.322 -5.382 23.517 Atomic orbital electron populations 1.23000 0.78941 1.03575 1.01140 1.86076 1.20847 1.27082 1.88891 1.18823 0.91631 0.84064 0.97553 1.21082 0.99494 0.92423 1.10481 1.20923 0.94844 0.96677 0.97950 1.21196 0.93657 0.98975 1.03828 1.21347 1.02029 0.90215 0.93650 1.19190 0.89651 0.95965 1.06386 1.20274 0.88146 0.92563 0.96149 0.93505 1.21543 0.99609 0.97533 0.95289 1.21579 0.96325 0.97220 1.00467 1.21583 0.96847 1.00801 0.96215 1.22148 0.98545 0.89639 0.96910 1.61784 1.12960 1.27027 1.22352 1.22333 0.96468 1.00153 0.88483 1.22353 0.91496 0.94055 0.93709 1.87942 1.27822 1.64054 1.49892 1.20169 0.77795 0.95398 0.94672 1.21092 0.97487 1.26311 1.09659 0.91438 1.24944 0.97146 0.96801 0.95716 1.69975 1.12897 1.44776 1.26378 0.86318 0.79397 0.80342 0.80664 1.19433 1.20968 1.20935 0.92906 0.92846 0.88547 0.85969 0.86238 0.85729 0.82717 0.91863 0.90941 0.92666 0.92032 0.91884 0.90530 0.95789 0.89355 0.89294 0.94823 0.94410 0.94428 0.98095 0.98028 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.65 9.63 -19.43 -0.19 -3.84 16 3 C 0.12 1.58 6.66 -39.22 -0.26 1.32 16 4 C -0.22 -2.42 9.04 -39.44 -0.36 -2.78 16 5 C -0.09 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.16 -2.06 10.04 -39.56 -0.40 -2.45 16 7 C -0.05 -0.80 7.24 -39.61 -0.29 -1.09 16 8 C -0.11 -1.56 4.37 -104.47 -0.46 -2.01 16 9 C 0.14 1.92 1.78 -68.88 -0.12 1.80 16 10 H 0.05 0.68 7.69 -51.93 -0.40 0.28 16 11 C -0.10 -1.31 5.36 -26.65 -0.14 -1.45 16 12 C -0.12 -1.39 6.00 -26.60 -0.16 -1.54 16 13 C -0.12 -1.55 6.09 -26.65 -0.16 -1.71 16 14 C 0.06 0.82 5.04 -3.83 -0.02 0.80 16 15 N -0.52 -8.12 3.68 -228.08 -0.84 -8.96 16 16 C 0.05 0.86 4.65 -3.82 -0.02 0.84 16 17 C 0.06 1.17 5.56 37.16 0.21 1.38 16 18 O -0.38 -9.06 10.23 -35.23 -0.36 -9.42 16 19 C 0.19 5.34 5.69 36.00 0.20 5.55 16 20 C -0.51 -14.98 9.43 -34.44 -0.32 -15.31 16 21 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 22 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 24 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.12 1.07 6.30 -52.48 -0.33 0.73 16 32 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.12 1.49 8.06 -52.48 -0.42 1.06 16 34 H 0.16 2.63 6.70 -52.48 -0.35 2.28 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 1.50 5.79 -51.93 -0.30 1.20 16 43 H 0.09 1.48 5.13 -51.93 -0.27 1.21 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 47 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 48 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -31.79 382.89 -9.92 -41.72 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.22 Total: -0.52 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.80 Total: -15.33 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.10 Total: -35.39 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.55 Total: -13.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.79 -9.92 -41.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590160098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.043 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds