Wall clock time and date at job start Tue Mar 31 2020 13:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35902 * 117.00043 * 2 1 4 4 C 1.38747 * 120.05571 * 0.03028 * 3 2 1 5 5 C 1.38118 * 119.94437 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05708 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10813 * 359.74761 * 6 5 4 8 8 C 1.38164 * 120.05905 * 0.50967 * 7 6 5 9 9 C 1.50695 * 120.03016 * 179.76793 * 8 7 6 10 10 H 1.09001 * 109.45959 * 144.72396 * 9 8 7 11 11 C 1.53037 * 109.46261 * 264.70082 * 9 8 7 12 12 C 1.53122 * 109.27664 * 179.18520 * 11 9 8 13 13 C 1.53124 * 109.15921 * 302.34520 * 12 11 9 14 14 C 1.53036 * 109.27749 * 57.65837 * 13 12 11 15 15 N 1.46842 * 109.45444 * 24.75208 * 9 8 7 16 16 C 1.46904 * 111.00213 * 54.14639 * 15 9 8 17 17 C 1.53005 * 109.47206 * 176.12214 * 16 15 9 18 18 O 1.42899 * 109.47056 * 62.26391 * 17 16 15 19 19 C 1.42896 * 114.00269 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47694 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99841 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31516 * 120.00409 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99934 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47045 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47271 * 120.00211 * 24 22 20 27 27 H 1.48500 * 109.47358 * 240.00609 * 24 22 20 28 28 H 1.09002 * 109.46915 * 299.99330 * 1 2 3 29 29 H 1.08995 * 109.47038 * 59.99922 * 1 2 3 30 30 H 1.09001 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.02753 * 359.94431 * 4 3 2 32 32 H 1.08010 * 119.97433 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.94463 * 180.02562 * 6 5 4 34 34 H 1.08005 * 119.97219 * 180.25459 * 7 6 5 35 35 H 1.08997 * 109.50263 * 299.12491 * 11 9 8 36 36 H 1.08996 * 109.50268 * 59.24405 * 11 9 8 37 37 H 1.08996 * 109.52326 * 62.25075 * 12 11 9 38 38 H 1.09001 * 109.52249 * 182.38023 * 12 11 9 39 39 H 1.09002 * 109.49626 * 177.59575 * 13 12 11 40 40 H 1.09002 * 109.50419 * 297.71373 * 13 12 11 41 41 H 1.08999 * 109.46470 * 60.83193 * 14 13 12 42 42 H 1.09000 * 109.46143 * 180.80630 * 14 13 12 43 43 H 1.08997 * 109.47233 * 296.12334 * 16 15 9 44 44 H 1.08999 * 109.47038 * 56.12149 * 16 15 9 45 45 H 1.09000 * 109.46898 * 182.26827 * 17 16 15 46 46 H 1.09004 * 109.47108 * 302.26682 * 17 16 15 47 47 H 1.09002 * 109.47050 * 300.00565 * 19 18 17 48 48 H 1.09005 * 109.47075 * 60.00288 * 19 18 17 49 49 H 0.96993 * 120.00257 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6047 0.0012 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0068 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0012 10 1 3.7464 -0.7417 0.5906 11 6 4.4267 -0.4742 -1.4360 12 6 5.2800 -1.7456 -1.4326 13 6 6.6287 -1.4439 -0.7733 14 6 6.3919 -0.9195 0.6448 15 7 5.5717 0.2972 0.5874 16 6 5.4395 0.9061 1.9178 17 6 6.8275 1.0886 2.5353 18 8 7.5955 1.9812 1.7257 19 6 8.9156 2.2216 2.2170 20 6 9.6310 3.1715 1.2913 21 1 9.1277 3.5538 0.4156 22 6 10.9276 3.5533 1.5630 23 7 11.5404 3.0882 2.6297 24 14 11.8146 4.7303 0.4152 25 1 10.9128 5.1042 -0.7039 26 1 12.2059 5.9515 1.1641 27 1 13.0300 4.0714 -0.1270 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2128 2.3203 0.0002 32 1 1.3340 4.5114 0.0012 33 1 3.7923 4.6381 0.0024 34 1 5.1345 2.5751 0.0113 35 1 3.4492 -0.6932 -1.8655 36 1 4.9216 0.2946 -2.0294 37 1 4.7671 -2.5270 -0.8718 38 1 5.4411 -2.0790 -2.4578 39 1 7.2243 -2.3558 -0.7294 40 1 7.1583 -0.6904 -1.3563 41 1 5.8745 -1.6789 1.2311 42 1 7.3497 -0.6902 1.1119 43 1 4.9521 1.8767 1.8263 44 1 4.8401 0.2573 2.5564 45 1 6.7271 1.5032 3.5385 46 1 7.3307 0.1233 2.5898 47 1 8.8582 2.6598 3.2134 48 1 9.4624 1.2798 2.2652 49 1 12.4527 3.3566 2.8206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590160098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:36 Heat of formation + Delta-G solvation = -73.442598 kcal Electronic energy + Delta-G solvation = -27966.772644 eV Core-core repulsion = 24279.356735 eV Total energy + Delta-G solvation = -3687.415909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.57968 -40.00784 -38.38628 -38.04838 -35.18192 -34.51080 -33.59672 -31.01671 -30.36291 -30.06115 -28.68116 -28.01417 -25.56048 -24.56651 -24.45044 -22.94531 -22.22606 -22.02522 -20.47016 -18.94304 -18.59076 -17.61252 -17.38351 -17.23305 -16.61682 -16.44632 -16.35142 -15.92242 -15.58978 -15.35198 -15.23416 -15.07933 -14.82893 -14.49843 -14.28790 -14.07635 -13.76585 -13.62696 -13.36597 -13.24509 -12.93711 -12.81934 -12.76347 -12.52437 -12.43668 -12.29699 -12.08129 -11.98017 -11.92963 -11.82591 -11.59412 -11.27129 -11.19295 -11.07892 -10.82272 -10.15801 -9.65286 -9.17459 -9.03545 -8.30171 -6.41453 0.41236 0.53271 1.40269 1.41624 1.56661 2.36117 2.42490 2.79729 2.89433 3.03627 3.23240 3.65953 3.92536 4.00887 4.03510 4.08070 4.17497 4.22642 4.25390 4.35117 4.38135 4.42704 4.43948 4.47941 4.54083 4.55967 4.61946 4.66440 4.76780 4.83138 4.85357 4.88977 4.92207 4.98078 5.05275 5.09772 5.14238 5.21076 5.24470 5.31086 5.38467 5.48052 5.55845 5.58248 5.70380 5.92333 5.99675 6.16828 6.30957 6.50683 6.58603 6.87797 7.30565 8.82520 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.003486 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.379441 B = 8030.091305 C = 8938.861165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.122 3.878 4 C -0.211 4.211 5 C -0.081 4.081 6 C -0.172 4.172 7 C -0.072 4.072 8 C -0.127 4.127 9 C 0.143 3.857 10 H 0.046 0.954 11 C -0.098 4.098 12 C -0.111 4.111 13 C -0.114 4.114 14 C 0.055 3.945 15 N -0.533 5.533 16 C 0.065 3.935 17 C 0.056 3.944 18 O -0.388 6.388 19 C 0.211 3.789 20 C -0.540 4.540 21 H 0.060 0.940 22 C 0.006 3.994 23 N -0.932 5.932 24 Si 0.981 3.019 25 H -0.265 1.265 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.043 0.957 46 H 0.043 0.957 47 H -0.019 1.019 48 H -0.018 1.018 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.160 -7.778 -6.499 26.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.244 6.244 3 C 0.076 3.924 4 C -0.230 4.230 5 C -0.099 4.099 6 C -0.190 4.190 7 C -0.090 4.090 8 C -0.128 4.128 9 C 0.035 3.965 10 H 0.064 0.936 11 C -0.135 4.135 12 C -0.148 4.148 13 C -0.152 4.152 14 C -0.073 4.073 15 N -0.258 5.258 16 C -0.063 4.063 17 C -0.021 4.021 18 O -0.307 6.307 19 C 0.135 3.865 20 C -0.577 4.577 21 H 0.078 0.922 22 C -0.192 4.192 23 N -0.572 5.572 24 Si 0.804 3.196 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.061 0.939 47 H -0.001 1.001 48 H -0.001 1.001 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.760 -7.568 -6.870 25.865 hybrid contribution 0.469 0.075 0.822 0.950 sum -23.291 -7.493 -6.048 25.203 Atomic orbital electron populations 1.23317 0.76666 1.05366 1.02184 1.86055 1.23187 1.26516 1.88647 1.18879 0.91230 0.85168 0.97079 1.21438 1.00989 0.91662 1.08897 1.21237 0.94083 0.98100 0.96469 1.21317 0.94791 0.98487 1.04417 1.21076 1.00546 0.91575 0.95822 1.19194 0.90677 0.95410 1.07519 1.20250 0.86981 0.92766 0.96482 0.93606 1.21509 1.00191 0.97526 0.94312 1.21541 0.94928 0.96889 1.01455 1.21564 0.98070 1.00683 0.94893 1.22122 0.97275 0.89800 0.98082 1.61751 1.14411 1.27632 1.22037 1.22175 0.94366 1.00532 0.89206 1.22623 0.92459 0.93287 0.93749 1.87915 1.26524 1.65374 1.50936 1.19772 0.79282 0.93920 0.93477 1.21375 0.98628 1.27625 1.10104 0.92175 1.25936 0.97628 0.98307 0.97363 1.70078 1.13550 1.45671 1.27872 0.85165 0.78044 0.77985 0.78392 1.18885 1.19651 1.19694 0.91918 0.91614 0.86576 0.82950 0.83322 0.85498 0.86090 0.90719 0.92737 0.91355 0.90361 0.90236 0.92854 0.94308 0.92136 0.89847 0.92896 0.93876 0.93920 1.00092 1.00070 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.89 9.63 -92.45 -0.89 -7.78 16 3 C 0.12 2.91 6.66 22.51 0.15 3.06 16 4 C -0.21 -4.18 9.04 22.36 0.20 -3.98 16 5 C -0.08 -1.67 10.04 22.25 0.22 -1.45 16 6 C -0.17 -4.48 10.04 22.28 0.22 -4.26 16 7 C -0.07 -2.20 7.24 22.25 0.16 -2.04 16 8 C -0.13 -3.56 4.37 -19.77 -0.09 -3.64 16 9 C 0.14 4.00 1.78 44.19 0.08 4.08 16 10 H 0.05 1.29 7.69 -2.39 -0.02 1.27 16 11 C -0.10 -2.46 5.36 30.65 0.16 -2.29 16 12 C -0.11 -2.45 6.00 30.68 0.18 -2.26 16 13 C -0.11 -3.05 6.09 30.65 0.19 -2.86 16 14 C 0.05 1.67 5.04 86.33 0.44 2.10 16 15 N -0.53 -17.30 3.68 -875.52 -3.22 -20.52 16 16 C 0.06 2.15 4.65 86.30 0.40 2.56 16 17 C 0.06 2.23 5.56 71.98 0.40 2.63 16 18 O -0.39 -19.68 10.23 -148.98 -1.52 -21.20 16 19 C 0.21 12.22 5.69 71.24 0.41 12.62 16 20 C -0.54 -32.99 9.43 25.60 0.24 -32.75 16 21 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 22 C 0.01 0.34 5.46 84.65 0.46 0.80 16 23 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 24 Si 0.98 45.46 29.54 68.60 2.03 47.49 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 29 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.15 2.03 6.30 -2.91 -0.02 2.02 16 32 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 34 H 0.12 4.48 6.70 -2.91 -0.02 4.46 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 2.16 5.79 -2.39 -0.01 2.15 16 43 H 0.08 2.90 5.13 -2.39 -0.01 2.88 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.65 6.05 -2.38 -0.01 1.64 16 47 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 48 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 49 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -70.42 382.89 2.53 -67.89 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.91 Total: 17.32 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 4.95 Total: -26.35 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.94 Total: -77.36 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -2.41 Total: -28.98 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.42 2.53 -67.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590160098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.554 kcal (2) G-P(sol) polarization free energy of solvation -70.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds