Wall clock time and date at job start Tue Mar 31 2020 13:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05922 * 359.72826 * 4 3 2 6 6 C 1.38121 * 119.94303 * 179.69478 * 5 4 3 7 7 C 1.38284 * 120.05670 * 0.60266 * 6 5 4 8 8 C 1.38245 * 120.11162 * 359.67148 * 7 6 5 9 9 C 1.50704 * 119.97222 * 179.97438 * 8 7 6 10 10 C 1.52989 * 109.47377 * 270.02397 * 9 8 7 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00162 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00103 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46989 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47348 * 299.99529 * 15 14 13 17 17 C 1.52998 * 109.47174 * 60.00112 * 15 14 13 18 18 C 1.50703 * 109.46641 * 179.97438 * 15 14 13 19 19 H 1.08003 * 120.00236 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99771 * 179.97438 * 18 15 14 21 21 N 1.31519 * 120.00201 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99992 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47216 * 60.00092 * 22 20 18 24 24 H 1.48497 * 109.46822 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47050 * 299.99697 * 22 20 18 26 26 C 1.38173 * 120.05607 * 0.02881 * 8 7 6 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.08003 * 120.02200 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.96674 * 180.29445 * 6 5 4 34 34 H 1.08003 * 119.94493 * 179.69558 * 7 6 5 35 35 H 1.09002 * 109.46581 * 30.02752 * 9 8 7 36 36 H 1.08999 * 109.46711 * 150.02339 * 9 8 7 37 37 H 1.08995 * 109.47307 * 300.00059 * 10 9 8 38 38 H 1.08999 * 109.47248 * 60.00271 * 10 9 8 39 39 H 0.96999 * 120.00015 * 0.02562 * 13 11 10 40 40 H 1.09002 * 109.46538 * 299.99930 * 14 13 11 41 41 H 1.08999 * 109.46933 * 59.99626 * 14 13 11 42 42 H 1.09007 * 109.46955 * 60.00075 * 16 15 14 43 43 H 1.08995 * 109.47584 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.47263 * 300.00698 * 16 15 14 45 45 H 1.08995 * 109.47336 * 59.99675 * 17 15 14 46 46 H 1.09002 * 109.46970 * 180.02562 * 17 15 14 47 47 H 1.08994 * 109.46832 * 299.99378 * 17 15 14 48 48 H 0.96993 * 119.99720 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.02728 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4259 0.0046 6 6 5.5689 0.6096 -0.0023 7 6 6.0962 1.8880 -0.0018 8 6 5.2551 2.9851 -0.0012 9 6 5.8331 4.3769 -0.0001 10 6 6.0289 4.8467 1.4426 11 6 6.6075 6.2382 1.4437 12 8 6.8398 6.7991 0.3938 13 7 6.8667 6.8593 2.6114 14 6 7.4287 8.2123 2.6124 15 6 7.6246 8.6820 4.0553 16 6 6.2755 8.6897 4.7768 17 6 8.5829 7.7313 4.7755 18 6 8.2033 10.0735 4.0563 19 1 8.4101 10.5731 3.1213 20 6 8.4676 10.7093 5.2508 21 7 8.2152 10.1013 6.3893 22 14 9.1842 12.4345 5.2521 23 1 8.2544 13.3572 4.5526 24 1 9.3744 12.8903 6.6525 25 1 10.4939 12.4269 4.5522 26 6 3.8849 2.8067 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7886 -0.5727 0.0095 33 1 6.2280 -0.2459 -0.0031 34 1 7.1669 2.0295 -0.0023 35 1 6.7942 4.3715 -0.5142 36 1 5.1504 5.0542 -0.5133 37 1 5.0678 4.8520 1.9567 38 1 6.7116 4.1694 1.9558 39 1 6.6812 6.4106 3.4511 40 1 8.3896 8.2069 2.0980 41 1 6.7458 8.8897 2.0997 42 1 5.8573 7.6830 4.7760 43 1 6.4150 9.0247 5.8046 44 1 5.5928 9.3670 4.2637 45 1 9.5440 7.7258 4.2614 46 1 8.7221 8.0657 5.8035 47 1 8.1647 6.7247 4.7747 48 1 8.4015 10.5485 7.2296 49 1 3.2283 3.6641 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600000526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:51 Heat of formation + Delta-G solvation = -76.315275 kcal Electronic energy + Delta-G solvation = -25897.118064 eV Core-core repulsion = 22209.577587 eV Total energy + Delta-G solvation = -3687.540477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44055 -39.32634 -38.00483 -36.37952 -33.81734 -33.23959 -32.34644 -30.95992 -30.09139 -29.39478 -26.01645 -25.71741 -25.28024 -24.31775 -23.25935 -22.72417 -20.86395 -19.88819 -18.75310 -18.11091 -16.81815 -16.43722 -16.34425 -16.23941 -15.74232 -15.27955 -15.07550 -14.65392 -14.40661 -13.82483 -13.74304 -13.54960 -13.38531 -13.03343 -12.96908 -12.91580 -12.52273 -12.39716 -12.18175 -11.97177 -11.81723 -11.66790 -11.36172 -11.17534 -11.08550 -11.02452 -10.89007 -10.82951 -10.72182 -10.37264 -10.19673 -9.62307 -9.55424 -9.25476 -8.96361 -8.77889 -8.43297 -8.39944 -8.28442 -6.01085 -4.11149 1.09826 1.25216 2.87926 3.10094 3.30777 3.35001 3.38414 3.50967 3.83610 4.40827 4.47759 4.50634 4.59264 4.71113 4.78999 4.87908 4.97567 5.06982 5.12558 5.17710 5.25456 5.30656 5.34630 5.36924 5.49933 5.62445 5.66243 5.76700 5.92808 6.06366 6.15673 6.22791 6.26218 6.34793 6.47631 6.52371 6.57811 6.80086 6.83650 6.95042 7.03008 7.06646 7.17548 7.36703 7.56656 7.70261 8.01967 8.08434 8.17494 8.39696 8.74408 8.89541 9.54494 11.00248 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.001966 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.931196 B =14240.755139 C =14636.510969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.130 3.870 5 C -0.216 4.216 6 C -0.079 4.079 7 C -0.153 4.153 8 C -0.038 4.038 9 C -0.065 4.065 10 C -0.136 4.136 11 C 0.503 3.497 12 O -0.555 6.555 13 N -0.718 5.718 14 C 0.132 3.868 15 C 0.055 3.945 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.149 4.149 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.398 0.602 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.260 0.740 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.665 -22.437 -9.619 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.085 3.915 5 C -0.235 4.235 6 C -0.097 4.097 7 C -0.172 4.172 8 C -0.038 4.038 9 C -0.103 4.103 10 C -0.176 4.176 11 C 0.289 3.711 12 O -0.434 6.434 13 N -0.368 5.368 14 C 0.009 3.991 15 C 0.054 3.946 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.167 4.167 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.233 0.767 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.070 0.930 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.640 -21.834 -10.148 26.323 hybrid contribution 0.379 0.395 0.524 0.757 sum -10.261 -21.439 -9.624 25.643 Atomic orbital electron populations 1.21780 0.92722 1.02828 1.03661 1.22768 0.95898 0.82060 1.01303 1.86082 1.19167 1.29194 1.88678 1.18966 0.82152 0.94112 0.96292 1.21197 0.94489 0.97831 1.09996 1.20915 0.94245 0.97255 0.97277 1.21021 0.99977 0.91933 1.04237 1.19774 0.92244 0.95730 0.96042 1.20352 1.02447 0.91407 0.96071 1.21638 1.02821 0.94691 0.98422 1.20559 0.78578 0.87774 0.84222 1.90665 1.53650 1.67594 1.31496 1.46343 1.63952 1.18649 1.07888 1.21700 0.96885 0.80019 1.00494 1.18359 0.93212 0.95034 0.87962 1.21828 0.96587 0.96183 1.04239 1.21824 0.97849 0.94902 1.04231 1.20949 1.41917 0.98962 0.92596 0.92516 1.24886 0.95340 0.97793 0.95541 1.69794 1.48243 1.37246 0.97195 0.86630 0.79695 0.84630 0.76877 1.20291 1.21341 1.20298 1.20358 0.94760 0.94893 1.06719 0.91479 0.90402 0.91416 0.92069 0.92136 0.85807 0.85857 0.85707 0.89834 0.89931 0.89003 0.89012 0.76708 0.92800 0.92803 0.97470 0.89611 0.95469 0.95469 0.89622 0.97488 0.92965 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.41 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.32 -3.28 10.14 -19.44 -0.20 -3.47 16 4 C 0.13 1.39 6.69 -39.22 -0.26 1.13 16 5 C -0.22 -1.99 9.04 -39.43 -0.36 -2.35 16 6 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 7 C -0.15 -1.51 9.70 -39.56 -0.38 -1.90 16 8 C -0.04 -0.41 5.13 -104.64 -0.54 -0.95 16 9 C -0.07 -0.77 4.63 -27.89 -0.13 -0.89 16 10 C -0.14 -1.64 5.68 -27.89 -0.16 -1.80 16 11 C 0.50 8.46 7.83 -10.98 -0.09 8.37 16 12 O -0.55 -11.36 15.98 5.56 0.09 -11.27 16 13 N -0.72 -12.66 4.96 -60.29 -0.30 -12.96 16 14 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 15 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 17 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 18 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 20 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 22 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 C -0.15 -1.66 9.64 -39.43 -0.38 -2.04 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 31 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 32 H 0.12 0.87 6.30 -52.48 -0.33 0.54 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 36 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.40 6.32 6.16 -40.82 -0.25 6.07 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 43 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 47 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 48 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 49 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -29.74 392.97 -9.13 -38.87 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.17 Total: 4.83 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.97 Total: -14.58 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.22 Total: -36.07 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.11 Total: -14.75 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.74 -9.13 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.443 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds