Wall clock time and date at job start Tue Mar 31 2020 13:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.35904 * 116.99628 * 180.02562 * 3 2 1 5 5 C 1.38758 * 120.05922 * 359.72826 * 4 3 2 6 6 C 1.38121 * 119.94303 * 179.69478 * 5 4 3 7 7 C 1.38284 * 120.05670 * 0.60266 * 6 5 4 8 8 C 1.38245 * 120.11162 * 359.67148 * 7 6 5 9 9 C 1.50704 * 119.97222 * 179.97438 * 8 7 6 10 10 C 1.52989 * 109.47377 * 270.02397 * 9 8 7 11 11 C 1.50700 * 109.47162 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00162 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00067 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00103 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46989 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47348 * 299.99529 * 15 14 13 17 17 C 1.52998 * 109.47174 * 60.00112 * 15 14 13 18 18 C 1.50703 * 109.46641 * 179.97438 * 15 14 13 19 19 H 1.08003 * 120.00236 * 0.02562 * 18 15 14 20 20 C 1.37877 * 119.99771 * 179.97438 * 18 15 14 21 21 N 1.31519 * 120.00201 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99992 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47216 * 60.00092 * 22 20 18 24 24 H 1.48497 * 109.46822 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47050 * 299.99697 * 22 20 18 26 26 C 1.38173 * 120.05607 * 0.02881 * 8 7 6 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 1.08003 * 120.02200 * 359.97438 * 5 4 3 33 33 H 1.07998 * 119.96674 * 180.29445 * 6 5 4 34 34 H 1.08003 * 119.94493 * 179.69558 * 7 6 5 35 35 H 1.09002 * 109.46581 * 30.02752 * 9 8 7 36 36 H 1.08999 * 109.46711 * 150.02339 * 9 8 7 37 37 H 1.08995 * 109.47307 * 300.00059 * 10 9 8 38 38 H 1.08999 * 109.47248 * 60.00271 * 10 9 8 39 39 H 0.96999 * 120.00015 * 0.02562 * 13 11 10 40 40 H 1.09002 * 109.46538 * 299.99930 * 14 13 11 41 41 H 1.08999 * 109.46933 * 59.99626 * 14 13 11 42 42 H 1.09007 * 109.46955 * 60.00075 * 16 15 14 43 43 H 1.08995 * 109.47584 * 180.02562 * 16 15 14 44 44 H 1.08999 * 109.47263 * 300.00698 * 16 15 14 45 45 H 1.08995 * 109.47336 * 59.99675 * 17 15 14 46 46 H 1.09002 * 109.46970 * 180.02562 * 17 15 14 47 47 H 1.08994 * 109.46832 * 299.99378 * 17 15 14 48 48 H 0.96993 * 119.99720 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.02728 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.2000 0.4259 0.0046 6 6 5.5689 0.6096 -0.0023 7 6 6.0962 1.8880 -0.0018 8 6 5.2551 2.9851 -0.0012 9 6 5.8331 4.3769 -0.0001 10 6 6.0289 4.8467 1.4426 11 6 6.6075 6.2382 1.4437 12 8 6.8398 6.7991 0.3938 13 7 6.8667 6.8593 2.6114 14 6 7.4287 8.2123 2.6124 15 6 7.6246 8.6820 4.0553 16 6 6.2755 8.6897 4.7768 17 6 8.5829 7.7313 4.7755 18 6 8.2033 10.0735 4.0563 19 1 8.4101 10.5731 3.1213 20 6 8.4676 10.7093 5.2508 21 7 8.2152 10.1013 6.3893 22 14 9.1842 12.4345 5.2521 23 1 8.2544 13.3572 4.5526 24 1 9.3744 12.8903 6.6525 25 1 10.4939 12.4269 4.5522 26 6 3.8849 2.8067 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.7886 -0.5727 0.0095 33 1 6.2280 -0.2459 -0.0031 34 1 7.1669 2.0295 -0.0023 35 1 6.7942 4.3715 -0.5142 36 1 5.1504 5.0542 -0.5133 37 1 5.0678 4.8520 1.9567 38 1 6.7116 4.1694 1.9558 39 1 6.6812 6.4106 3.4511 40 1 8.3896 8.2069 2.0980 41 1 6.7458 8.8897 2.0997 42 1 5.8573 7.6830 4.7760 43 1 6.4150 9.0247 5.8046 44 1 5.5928 9.3670 4.2637 45 1 9.5440 7.7258 4.2614 46 1 8.7221 8.0657 5.8035 47 1 8.1647 6.7247 4.7747 48 1 8.4015 10.5485 7.2296 49 1 3.2283 3.6641 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600000526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:50 Heat of formation + Delta-G solvation = -91.632318 kcal Electronic energy + Delta-G solvation = -25897.782261 eV Core-core repulsion = 22209.577587 eV Total energy + Delta-G solvation = -3688.204674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19171 -40.69011 -38.79312 -38.09139 -34.96277 -34.73992 -32.87203 -32.74073 -30.93295 -30.20704 -27.55725 -27.55244 -27.04234 -25.38548 -24.06384 -23.44932 -21.71851 -21.17044 -20.56986 -18.87733 -18.24479 -17.58966 -17.11190 -17.01869 -16.97560 -16.68060 -16.43575 -16.39655 -15.35745 -15.02228 -14.77804 -14.70410 -14.38390 -14.31421 -14.07163 -13.84264 -13.75922 -13.42157 -13.35076 -13.15547 -13.06414 -12.66387 -12.64417 -12.56863 -12.52658 -12.41567 -12.24000 -12.12963 -11.95969 -11.63532 -11.59642 -11.47418 -11.26440 -10.82763 -10.66919 -10.38961 -9.89997 -9.75919 -9.12490 -8.01637 -6.17335 0.35479 0.51723 1.44087 1.45156 1.51806 1.74855 2.26154 2.36838 2.51913 2.83373 3.21621 3.70595 3.88862 4.00168 4.06732 4.08785 4.15950 4.21445 4.31520 4.38856 4.44777 4.47747 4.51621 4.53196 4.63719 4.69921 4.74167 4.85922 4.94530 4.99015 5.01929 5.07094 5.10367 5.13108 5.20123 5.20685 5.23304 5.38663 5.39535 5.52152 5.62895 5.67629 5.68153 5.71042 5.87004 6.16182 6.22753 6.44301 6.50565 6.72150 6.86678 7.37736 7.50095 8.96946 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025108 B = 0.001966 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.931196 B =14240.755139 C =14636.510969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.338 6.338 4 C 0.117 3.883 5 C -0.216 4.216 6 C -0.078 4.078 7 C -0.160 4.160 8 C -0.044 4.044 9 C -0.059 4.059 10 C -0.123 4.123 11 C 0.503 3.497 12 O -0.594 6.594 13 N -0.713 5.713 14 C 0.148 3.852 15 C 0.049 3.951 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.529 4.529 19 H 0.043 0.957 20 C 0.027 3.973 21 N -0.899 5.899 22 Si 0.945 3.055 23 H -0.278 1.278 24 H -0.282 1.282 25 H -0.277 1.277 26 C -0.167 4.167 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.409 0.591 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.062 0.938 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.062 0.938 47 H 0.038 0.962 48 H 0.260 0.740 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.980 -24.956 -9.450 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.252 6.252 4 C 0.072 3.928 5 C -0.234 4.234 6 C -0.096 4.096 7 C -0.178 4.178 8 C -0.044 4.044 9 C -0.097 4.097 10 C -0.162 4.162 11 C 0.291 3.709 12 O -0.476 6.476 13 N -0.364 5.364 14 C 0.024 3.976 15 C 0.049 3.951 16 C -0.179 4.179 17 C -0.178 4.178 18 C -0.567 4.567 19 H 0.062 0.938 20 C -0.173 4.173 21 N -0.537 5.537 22 Si 0.772 3.228 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.203 1.203 26 C -0.186 4.186 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.246 0.754 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.969 -24.379 -9.964 28.529 hybrid contribution 0.435 1.117 0.429 1.273 sum -10.534 -23.262 -9.535 27.258 Atomic orbital electron populations 1.21816 0.91806 1.04152 1.03035 1.23048 0.96700 0.80773 1.02316 1.86063 1.19097 1.31380 1.88708 1.19130 0.82681 0.94402 0.96626 1.21495 0.94590 0.98435 1.08912 1.21254 0.94539 0.97749 0.96013 1.21237 1.00552 0.92061 1.03984 1.19643 0.92243 0.95346 0.97169 1.20236 1.01828 0.91980 0.95626 1.21628 1.03826 0.91534 0.99226 1.21367 0.77404 0.89110 0.83045 1.90653 1.55150 1.68914 1.32858 1.46189 1.63950 1.17307 1.08985 1.21235 0.95826 0.81778 0.98806 1.18372 0.93592 0.94023 0.89148 1.21671 0.96110 0.97727 1.02346 1.21661 0.97461 0.96350 1.02308 1.21245 1.42549 1.00728 0.92215 0.93842 1.25462 0.95770 1.00630 0.95405 1.69899 1.48443 1.38064 0.97308 0.85826 0.78893 0.81224 0.76907 1.20343 1.20777 1.20273 1.20428 0.95012 0.95309 1.07805 0.92057 0.88083 0.92085 0.91009 0.91026 0.83599 0.83170 0.84486 0.90457 0.91365 0.87180 0.86505 0.75353 0.94464 0.94631 0.94309 0.91902 0.96449 0.96330 0.91942 0.94272 0.93026 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.05 0.54 5.46 71.98 0.39 0.93 16 3 O -0.34 -6.68 10.14 -92.47 -0.94 -7.62 16 4 C 0.12 2.36 6.69 22.51 0.15 2.51 16 5 C -0.22 -3.43 9.04 22.37 0.20 -3.23 16 6 C -0.08 -1.16 10.04 22.25 0.22 -0.93 16 7 C -0.16 -2.79 9.70 22.28 0.22 -2.58 16 8 C -0.04 -0.90 5.13 -19.88 -0.10 -1.00 16 9 C -0.06 -1.34 4.63 29.85 0.14 -1.20 16 10 C -0.12 -2.73 5.68 29.84 0.17 -2.56 16 11 C 0.50 16.40 7.83 87.66 0.69 17.08 16 12 O -0.59 -24.46 15.98 -3.03 -0.05 -24.50 16 13 N -0.71 -24.22 4.96 -463.05 -2.30 -26.52 16 14 C 0.15 6.32 4.50 86.38 0.39 6.71 16 15 C 0.05 2.29 0.50 -52.93 -0.03 2.26 16 16 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 17 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 18 C -0.53 -28.16 8.01 25.60 0.21 -27.95 16 19 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 20 C 0.03 1.44 5.15 84.65 0.44 1.87 16 21 N -0.90 -48.02 9.35 21.45 0.20 -47.82 16 22 Si 0.94 42.85 29.54 68.60 2.03 44.87 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 C -0.17 -3.63 9.64 22.37 0.22 -3.41 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.68 7.65 -2.39 -0.02 0.66 16 31 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 32 H 0.15 1.58 6.30 -2.91 -0.02 1.56 16 33 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.08 1.83 8.04 -2.39 -0.02 1.81 16 36 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.41 11.95 6.16 -92.71 -0.57 11.38 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.04 1.43 6.86 -2.38 -0.02 1.42 16 43 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 47 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 48 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 49 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -64.73 392.97 4.50 -60.23 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.36 Total: 22.98 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 5.20 Total: -21.62 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.10 Total: -74.34 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.99 Total: -32.13 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -64.73 4.50 -60.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600000526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.403 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds