Wall clock time and date at job start Tue Mar 31 2020 13:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42894 * 109.47331 * 2 1 4 4 C 1.35982 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.07012 * 0.02562 * 4 3 2 6 6 C 1.37941 * 119.90623 * 180.02562 * 5 4 3 7 7 C 1.39130 * 120.29114 * 359.97438 * 6 5 4 8 8 C 1.38350 * 119.78271 * 359.84768 * 7 6 5 9 9 C 1.38508 * 119.88604 * 0.22548 * 8 7 6 10 10 C 1.50780 * 121.41345 * 180.24888 * 8 7 6 11 11 H 1.09004 * 109.40379 * 102.22748 * 10 8 7 12 12 N 1.46902 * 109.43720 * 222.12118 * 10 8 7 13 13 C 1.46907 * 110.99898 * 202.13758 * 12 10 8 14 14 C 1.53002 * 109.46843 * 185.83417 * 13 12 10 15 15 H 1.08997 * 109.47258 * 54.99684 * 14 13 12 16 16 C 1.52999 * 109.47060 * 294.99431 * 14 13 12 17 17 C 1.53003 * 109.46838 * 175.00097 * 14 13 12 18 18 C 1.50700 * 109.46875 * 185.00052 * 17 14 13 19 19 H 1.08004 * 120.00108 * 359.97438 * 18 17 14 20 20 C 1.37873 * 119.99659 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99895 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47037 * 59.99343 * 22 20 18 24 24 H 1.48498 * 109.47206 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46887 * 300.00138 * 22 20 18 26 26 C 1.53065 * 109.67390 * 342.18460 * 10 8 7 27 27 C 1.53411 * 108.27727 * 48.28864 * 26 10 8 28 28 O 1.35956 * 118.43623 * 179.77840 * 7 6 5 29 29 H 1.09008 * 109.46489 * 300.00245 * 1 2 3 30 30 H 1.08999 * 109.46854 * 59.99552 * 1 2 3 31 31 H 1.08996 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46922 * 240.00067 * 2 1 3 33 33 H 1.08999 * 109.46854 * 120.00448 * 2 1 3 34 34 H 1.08006 * 120.04273 * 0.06272 * 5 4 3 35 35 H 1.07996 * 119.85863 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.86240 * 179.88627 * 9 8 7 37 37 H 1.00900 * 111.00220 * 326.08619 * 12 10 8 38 38 H 1.09005 * 109.46561 * 305.83132 * 13 12 10 39 39 H 1.08996 * 109.46837 * 65.83180 * 13 12 10 40 40 H 1.08996 * 109.47174 * 300.00774 * 16 14 13 41 41 H 1.09008 * 109.46904 * 60.00176 * 16 14 13 42 42 H 1.08995 * 109.47379 * 179.97438 * 16 14 13 43 43 H 1.09001 * 109.46521 * 304.99435 * 17 14 13 44 44 H 1.08992 * 109.47275 * 64.99251 * 17 14 13 45 45 H 0.96998 * 119.99946 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.70214 * 167.98712 * 26 10 8 47 47 H 1.08999 * 109.70259 * 288.58958 * 26 10 8 48 48 H 1.08998 * 109.68060 * 54.96590 * 27 26 10 49 49 H 1.08995 * 109.68033 * 175.48400 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5253 0.0005 5 6 4.2009 0.4262 0.0005 6 6 5.5679 0.6108 0.0016 7 6 6.1026 1.8953 0.0022 8 6 5.2581 2.9911 -0.0015 9 6 3.8856 2.8048 -0.0011 10 6 5.7977 4.3991 -0.0066 11 1 5.7238 4.8116 -1.0129 12 7 5.0134 5.2265 0.9197 13 6 5.1300 6.6512 0.5807 14 6 4.4225 7.4889 1.6478 15 1 4.8252 7.2414 2.6300 16 6 2.9227 7.1880 1.6208 17 6 4.6497 8.9749 1.3630 18 6 4.0581 9.7964 2.4794 19 1 3.5687 9.3075 3.3088 20 6 4.1417 11.1721 2.4418 21 7 4.7381 11.7674 1.4321 22 14 3.4078 12.1905 3.8253 23 1 4.0608 11.8262 5.1083 24 1 3.6295 13.6328 3.5495 25 1 1.9503 11.9220 3.9181 26 6 7.2635 4.3908 0.4341 27 6 7.9982 3.3024 -0.3591 28 8 7.4551 2.0335 0.0079 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7900 -0.5727 -0.0009 35 1 6.2261 -0.2454 0.0012 36 1 3.2268 3.6605 -0.0021 37 1 4.0471 4.9363 0.9343 38 1 6.1831 6.9297 0.5392 39 1 4.6676 6.8328 -0.3895 40 1 2.5201 7.4353 0.6386 41 1 2.7608 6.1292 1.8237 42 1 2.4187 7.7843 2.3813 43 1 5.7195 9.1722 1.2942 44 1 4.1697 9.2419 0.4216 45 1 4.7965 12.7352 1.4055 46 1 7.7142 5.3619 0.2297 47 1 7.3254 4.1735 1.5004 48 1 7.8563 3.4674 -1.4271 49 1 9.0616 3.3297 -0.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602618216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:09 Heat of formation + Delta-G solvation = -68.171790 kcal Electronic energy + Delta-G solvation = -26818.962638 eV Core-core repulsion = 23131.775288 eV Total energy + Delta-G solvation = -3687.187349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03333 -39.49413 -37.30093 -36.58851 -34.78292 -32.47516 -32.12546 -30.84352 -30.65182 -29.20501 -26.87261 -25.82393 -24.47503 -24.40424 -22.95542 -22.42752 -21.77890 -19.99561 -19.07091 -18.17569 -17.85344 -16.82134 -16.39086 -16.33054 -15.64093 -15.38082 -15.12797 -14.64888 -14.49265 -14.31436 -13.86602 -13.69212 -13.63052 -13.26348 -13.19448 -12.93831 -12.82723 -12.50239 -12.41415 -12.32374 -11.87243 -11.69754 -11.45899 -11.30010 -11.14832 -11.07492 -10.86028 -10.76375 -10.63596 -10.37680 -10.31808 -10.15757 -9.70991 -9.19401 -9.09447 -8.96594 -8.31362 -8.19666 -7.81983 -5.96257 -3.97295 1.04796 1.30626 2.96323 3.20358 3.35822 3.39966 3.42777 3.53025 4.29836 4.40063 4.50152 4.54250 4.60203 4.68862 4.70873 4.78654 4.89144 4.94559 5.05502 5.17684 5.24937 5.30257 5.39553 5.41735 5.46232 5.46726 5.66759 5.72516 5.76228 5.78645 5.80697 5.83550 6.06922 6.11262 6.13983 6.25599 6.27237 6.38518 6.48411 6.57365 6.95561 7.12925 7.14882 7.18495 7.32798 7.37919 7.59471 7.70843 7.87212 8.04005 8.48038 9.08828 9.66048 11.15271 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.002800 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.192670 B = 9996.768618 C =11824.591131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.315 6.315 4 C 0.101 3.899 5 C -0.176 4.176 6 C -0.111 4.111 7 C 0.105 3.895 8 C -0.111 4.111 9 C -0.114 4.114 10 C 0.129 3.871 11 H 0.056 0.944 12 N -0.680 5.680 13 C 0.062 3.938 14 C -0.082 4.082 15 H 0.066 0.934 16 C -0.134 4.134 17 C 0.029 3.971 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.149 4.149 27 C 0.063 3.937 28 O -0.317 6.317 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.342 0.658 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.040 0.960 41 H 0.032 0.968 42 H 0.062 0.938 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.260 0.740 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -25.979 -6.277 26.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.056 3.944 5 C -0.195 4.195 6 C -0.130 4.130 7 C 0.060 3.940 8 C -0.112 4.112 9 C -0.133 4.133 10 C 0.019 3.981 11 H 0.074 0.926 12 N -0.314 5.314 13 C -0.066 4.066 14 C -0.101 4.101 15 H 0.084 0.916 16 C -0.192 4.192 17 C -0.009 4.009 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.187 4.187 27 C -0.013 4.013 28 O -0.232 6.232 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.164 0.836 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.212 -25.758 -5.826 26.410 hybrid contribution -0.941 0.769 -0.122 1.221 sum -0.729 -24.990 -5.948 25.698 Atomic orbital electron populations 1.21778 0.92763 1.02745 1.03711 1.22751 0.95903 0.82167 1.01186 1.86097 1.18773 1.28982 1.89137 1.18702 0.82421 0.93730 0.99545 1.20980 0.93194 0.98152 1.07136 1.20324 0.94360 0.95035 1.03247 1.18511 0.82568 0.92918 1.00040 1.19694 0.92770 0.94858 1.03928 1.20068 0.93875 0.95209 1.04183 1.20271 0.93985 0.88599 0.95219 0.92595 1.60705 1.15905 1.03561 1.51254 1.22231 1.00967 0.85847 0.97546 1.21206 0.94109 0.97298 0.97490 0.91588 1.21741 0.97283 0.98645 1.01509 1.19106 0.96853 0.88031 0.96907 1.21204 1.36244 0.91098 1.06569 0.92604 1.25014 0.95554 0.98110 0.95841 1.69954 1.43785 1.09417 1.30592 0.86693 0.79701 0.79122 0.82692 1.20272 1.21389 1.20296 1.22272 0.94484 0.99784 1.02183 1.23003 0.98339 0.81259 0.98680 1.85973 1.17656 1.35194 1.84370 0.91372 0.91497 0.90470 0.92229 0.92117 0.85022 0.84960 0.85022 0.83571 0.91333 0.95657 0.94037 0.94949 0.91850 0.96709 0.96770 0.93058 0.89554 0.89266 0.92022 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.42 5.46 37.16 0.20 0.63 16 3 O -0.32 -3.61 10.14 -19.68 -0.20 -3.81 16 4 C 0.10 1.21 6.68 -39.29 -0.26 0.95 16 5 C -0.18 -1.81 9.03 -39.51 -0.36 -2.16 16 6 C -0.11 -1.21 9.93 -39.36 -0.39 -1.60 16 7 C 0.10 1.32 6.47 -39.21 -0.25 1.07 16 8 C -0.11 -1.45 5.56 -104.44 -0.58 -2.03 16 9 C -0.11 -1.47 8.90 -39.37 -0.35 -1.82 16 10 C 0.13 1.70 2.65 -68.79 -0.18 1.52 16 11 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 12 N -0.68 -10.29 6.23 -107.86 -0.67 -10.97 16 13 C 0.06 1.08 4.93 -3.82 -0.02 1.06 16 14 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 15 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 16 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 17 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 18 C -0.51 -14.42 8.41 -34.44 -0.29 -14.71 16 19 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 22 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.15 -1.76 5.52 -26.48 -0.15 -1.91 16 27 C 0.06 0.62 7.03 37.37 0.26 0.89 16 28 O -0.32 -3.86 10.27 -19.60 -0.20 -4.06 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.13 0.99 6.31 -52.48 -0.33 0.66 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.68 6.57 -52.49 -0.34 1.34 16 37 H 0.34 5.07 4.69 -39.29 -0.18 4.89 16 38 H 0.07 1.18 7.35 -51.93 -0.38 0.80 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.53 6.82 -51.92 -0.35 0.18 16 42 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 43 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.09 0.97 7.55 -51.93 -0.39 0.58 16 47 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -31.44 385.30 -9.80 -41.23 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.13 Total: 2.08 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.11 Total: -20.75 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.06 Total: -37.30 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.40 Total: -7.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.44 -9.80 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602618216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.938 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds